Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
zinc-binding alcohol dehydrogenase-like proteinmaker-scaffold1258_size52332-snap-gene-0.11gene
zinc-binding dehydrogenasemaker-scaffold534_size144770-snap-gene-0.36gene
zinc-binding oxidoreductase proteinmaker-scaffold17_size721972-snap-gene-2.10gene
zinc chelation proteinmaker-scaffold430_size173499-snap-gene-0.34gene
zinc fingermaker-scaffold187_size272365-snap-gene-1.25gene
zinc fingermaker-scaffold98_size375582-snap-gene-1.17gene
zinc fingersnap_masked-scaffold430_size173499-processed-gene-0.5gene
zinc fingermaker-scaffold281_size224178-snap-gene-0.16gene
zinc finger snap_masked-scaffold351_size199180-processed-gene-0.18gene
zinc finger 1maker-scaffold1054_size66621-snap-gene-0.13gene
zinc finger a20 and an1 domain-containing stress-associated protein 6maker-scaffold274_size229011-snap-gene-1.25gene
zinc finger and btb domain-containing protein 48snap_masked-scaffold797_size95806-processed-gene-0.2gene
zinc finger and btb domain-containing protein 49maker-scaffold153_size302544-snap-gene-2.23gene
zinc finger and scan domain-containing protein 2snap_masked-scaffold355_size198070-processed-gene-0.17gene
zinc finger and scan domain-containing protein 2 isoform x3maker-scaffold1023_size69924-snap-gene-0.17gene
zinc finger bed domain-containing protein 4- partialmaker-scaffold25_size650667-snap-gene-3.19gene
zinc finger ccch domain-containing protein 11a-like isoform x2snap_masked-scaffold717_size107106-processed-gene-0.3gene
zinc finger ccch-type with g patch domain-containing proteinsnap_masked-scaffold753_size102382-processed-gene-0.22gene
zinc finger cchc domain-containing protein 10maker-scaffold408_size180710-snap-gene-0.40gene
zinc finger cw-type pwwp domain protein 1maker-scaffold76_size406464-snap-gene-2.12gene
zinc finger fyve domain-containing protein 1maker-scaffold410_size180147-snap-gene-0.28gene
zinc finger fyve domain-containing protein 21maker-scaffold340_size202118-snap-gene-1.24gene
zinc finger hit domain-containing protein 3maker-scaffold217_size252476-snap-gene-1.33gene
zinc finger homeobox-like partialmaker-scaffold1485_size38829-snap-gene-0.6gene
zinc finger matrin-type protein 2-likemaker-scaffold419_size176504-snap-gene-0.31gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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