Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
zinc finger matrin-type protein 3maker-scaffold199_size265817-snap-gene-1.55gene
zinc finger miz domain-containing protein 1maker-scaffold285_size222332-snap-gene-1.20gene
zinc finger mym-type protein 4-likesnap_masked-scaffold1804_size27482-processed-gene-0.3gene
zinc finger mynd domain-containing protein 10maker-scaffold17_size721972-snap-gene-6.28gene
zinc finger proteinsnap_masked-scaffold256_size235750-processed-gene-1.21gene
zinc finger proteinmaker-scaffold126_size328755-snap-gene-2.11gene
zinc finger proteinmaker-scaffold440_size170678-snap-gene-0.28gene
zinc finger proteinmaker-scaffold606_size125303-snap-gene-0.18gene
zinc finger protein 112-likemaker-scaffold425_size175135-snap-gene-0.42gene
zinc finger protein 132- partialmaker-scaffold1149_size94623-snap-gene-0.19gene
zinc finger protein 184-likemaker-scaffold594_size129171-snap-gene-0.22gene
zinc finger protein 184-likemaker-scaffold84_size396325-snap-gene-2.36gene
zinc finger protein 1-likemaker-scaffold98_size375582-snap-gene-0.10gene
zinc finger protein 207-likemaker-scaffold435_size171904-snap-gene-0.23gene
zinc finger protein 208-likemaker-scaffold145_size311916-snap-gene-2.21gene
zinc finger protein 226-likesnap_masked-scaffold2629_size13770-processed-gene-0.2gene
zinc finger protein 235-like isoform x1maker-scaffold424_size175595-snap-gene-0.23gene
zinc finger protein 235- partialmaker-scaffold291_size219542-snap-gene-0.11gene
zinc finger protein 26-likesnap_masked-scaffold130_size324016-processed-gene-1.6gene
zinc finger protein 271-likemaker-scaffold658_size117954-snap-gene-0.33gene
zinc finger protein 271-likemaker-scaffold1057_size73593-snap-gene-0.27gene
zinc finger protein 271-like isoform x3maker-scaffold414_size178625-snap-gene-0.33gene
zinc finger protein 277maker-scaffold486_size158769-snap-gene-0.29gene
zinc finger protein 2 homologsnap_masked-scaffold12_size759060-processed-gene-5.11gene
zinc finger protein 2 homologsnap_masked-scaffold160_size295910-processed-gene-1.8gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
Downloads