Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
Alpha-N-acetylgalactosaminidasemaker-scaffold697_size109876-snap-gene-0.28gene
alpha- -n-acetylglucosaminyltransferase-likemaker-scaffold373_size192110-snap-gene-0.43gene
alpha- partialmaker-scaffold440_size170678-snap-gene-0.34gene
alpha- partialsnap_masked-scaffold566_size135349-processed-gene-0.3gene
alpha- sarcomeric isoform x1maker-scaffold565_size135592-snap-gene-0.21gene
alpha skeletal muscle b-like isoform x2maker-scaffold1185_size56580-snap-gene-0.15gene
alpha-tocopherol transfer proteinmaker-scaffold426_size175065-snap-gene-0.47gene
alpha-tubulinmaker-scaffold438_size171652-snap-gene-0.40gene
alpha-tubulin n-acetyltransferase isoform x2maker-scaffold143_size313727-snap-gene-2.18gene
alpha-xylosidasemaker-scaffold101_size371023-snap-gene-2.21gene
alternative mitochondrial-likemaker-scaffold82_size396747-snap-gene-2.29gene
alternative splicing factor srp55 b52maker-scaffold2813_size12200-snap-gene-0.6gene
ALYmaker-scaffold270_size230592-snap-gene-1.21gene
amidasemaker-scaffold419_size176504-snap-gene-0.29gene
amidinotransferasemaker-scaffold548_size139981-snap-gene-0.25gene
amidohydrolasemaker-scaffold1185_size56580-snap-gene-0.13gene
amidohydrolasemaker-scaffold33_size549341-snap-gene-4.24gene
amidohydrolasemaker-scaffold85_size395806-snap-gene-1.22gene
amidohydrolasemaker-scaffold915_size81523-snap-gene-0.11gene
amidohydrolase ytcjmaker-scaffold3808_size7414-snap-gene-0.3gene
amine sulfotransferase-likemaker-scaffold156_size297567-snap-gene-1.33gene
amino acid abc transportermaker-scaffold1179_size56971-snap-gene-0.13gene
amino acid permeasemaker-scaffold528_size145933-snap-gene-0.23gene
amino acid permeasemaker-scaffold590_size129399-snap-gene-0.29gene
amino acid permease -like isoform 1maker-scaffold425_size175135-snap-gene-0.50gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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