Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
atp-dependent rna helicase ddx1 isoform x1maker-scaffold716_size107355-snap-gene-0.25gene
atp-dependent rna helicase ddx24 isoform x2maker-scaffold3041_size10531-snap-gene-0.2gene
atp-dependent rna helicase ddx42-likesnap_masked-scaffold1269_size51662-processed-gene-0.4gene
atp-dependent rna helicase ddx42-likesnap_masked-scaffold907_size82601-processed-gene-0.19gene
atp-dependent rna helicase ddx43snap_masked-scaffold100_size373717-processed-gene-2.26gene
atp-dependent rna helicase ddx43snap_masked-scaffold1570_size35393-processed-gene-0.3gene
atp-dependent rna helicase ddx55maker-scaffold365_size194585-snap-gene-0.24gene
atp-dependent rna helicase dhx30-likemaker-scaffold301_size216225-snap-gene-0.17gene
atp-dependent rna helicase dhx8-likesnap_masked-scaffold43_size480169-processed-gene-3.4gene
atp-dependent rna helicase kurzmaker-scaffold40_size501252-snap-gene-2.13gene
atp-dependent rna helicase me31bmaker-scaffold114_size351134-snap-gene-1.15gene
atp-dependent rna helicase tdrd9maker-scaffold339_size202159-snap-gene-1.20gene
atp-dependent zinc-metallo proteasemaker-scaffold3486_size8444-snap-gene-0.3gene
atp f0f1 synthase subunit alphamaker-scaffold3117_size10146-snap-gene-0.0gene
atp f0f1 synthase subunit alphasnap_masked-scaffold3505_size8384-processed-gene-0.0gene
atp f0f1 synthase subunit betasnap_masked-scaffold3177_size9866-processed-gene-0.1gene
atp f0f1 synthase subunit betasnap_masked-scaffold5958_size4206-processed-gene-0.1gene
atp-sensitive inward rectifier potassium channel 12maker-scaffold620_size123222-snap-gene-0.13gene
atp-sensitive inward rectifier potassium channel 12snap_masked-scaffold963_size76285-processed-gene-0.10gene
atp synthasesnap_masked-scaffold647_size119995-processed-gene-0.10gene
atp synthase alpha subunit vacuolarmaker-scaffold269_size230758-snap-gene-1.41gene
atp synthase beta chainsnap_masked-scaffold962_size76347-processed-gene-0.11gene
atp synthase-coupling factor mitochondrialmaker-scaffold203_size261420-snap-gene-1.28gene
atp synthase delta partialmaker-scaffold201_size263271-snap-gene-1.22gene
atp synthase e chainmaker-scaffold270_size230592-snap-gene-1.26gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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