Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
calmodulin isoform x2maker-scaffold534_size144770-snap-gene-0.32gene
calmodulin partialmaker-scaffold692_size110616-snap-gene-0.20gene
Calpain B maker-scaffold373_size192110-snap-gene-0.44gene
calpain-b-like isoform 2maker-scaffold2030_size22264-snap-gene-0.8gene
calpain-b-like isoform x14maker-scaffold208_size258758-snap-gene-1.28gene
calpain tmaker-scaffold516_size150393-snap-gene-0.24gene
Calponin-3maker-scaffold918_size81203-snap-gene-0.16gene
calponin homology domain-containing protein ddb_g0272472-like isoform x4maker-scaffold205_size259573-snap-gene-0.16gene
calponin transgelinmaker-scaffold776_size99073-snap-gene-0.19gene
Calreticulinmaker-scaffold495_size155559-snap-gene-0.36gene
Calsequestrin-1 precursor maker-scaffold344_size201325-snap-gene-1.23gene
calumenin precursormaker-scaffold795_size96016-snap-gene-0.17gene
camp cgmp cyclic nucleotidesnap_masked-scaffold1615_size33485-processed-gene-0.0gene
camp-dependent protein kinase catalyticmaker-scaffold1768_size28640-snap-gene-0.5gene
camp-dependent protein kinase catalyticsnap_masked-scaffold1122_size61463-processed-gene-0.0gene
camp-dependent protein kinase type i regulatory subunit isoform x2maker-scaffold98_size375582-snap-gene-2.30gene
camp-regulated phosphoprotein 19maker-scaffold422_size175911-snap-gene-0.36gene
camp-specific 3 -cyclic isoform f-like isoform x2maker-scaffold53_size449031-snap-gene-2.12gene
camp-specific 3 -cyclic isoforms n g-likemaker-scaffold53_size449031-snap-gene-3.8gene
camp-specific 3 -cyclic phosphodiesterasemaker-scaffold53_size449031-snap-gene-2.13gene
camp-specific -cyclicmaker-scaffold459_size165548-snap-gene-0.23gene
canopy homolog 2 precursormaker-scaffold851_size88925-snap-gene-0.21gene
cappuccino homologmaker-scaffold188_size271682-snap-gene-1.37gene
Caprin-1maker-scaffold745_size103310-snap-gene-0.14gene
carbamoyl-phosphate large subunitmaker-scaffold69_size418775-snap-gene-0.16gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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