Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
carbamoyl phosphate synthase large subunitmaker-scaffold292_size219010-snap-gene-1.39gene
carbamoyl phosphate synthase large subunitsnap_masked-scaffold2_size2283618-processed-gene-14.1gene
carbamoyl phosphate synthase small subunitmaker-scaffold538_size144251-snap-gene-0.9gene
Carbamoyltransferasemaker-scaffold797_size95806-snap-gene-0.21gene
carbohydrate sulfotransferase 1maker-scaffold802_size95064-snap-gene-0.15gene
carbohydrate sulfotransferase 11maker-scaffold287_size221780-snap-gene-1.30gene
carbohydrate sulfotransferase 11maker-scaffold660_size117387-snap-gene-0.23gene
carbohydrate sulfotransferase 11maker-scaffold678_size113531-snap-gene-0.9gene
carbohydrate sulfotransferase 11-likemaker-scaffold1297_size49794-snap-gene-0.7gene
carbohydrate sulfotransferase 11-likemaker-scaffold176_size284796-snap-gene-1.18gene
carbohydrate sulfotransferase 11-like isoform x2maker-scaffold1763_size28780-snap-gene-0.3gene
carbohydrate sulfotransferase 4-likemaker-scaffold282_size228295-snap-gene-0.15gene
carbohydrate sulfotransferase 8-likemaker-scaffold2822_size12116-snap-gene-0.4gene
carbohydrate sulfotransferase partialmaker-scaffold1863_size26100-snap-gene-0.5gene
carbonate dehydratasesnap_masked-scaffold10710_size2146-processed-gene-0.0gene
carbonic anhydrasemaker-scaffold459_size165548-snap-gene-0.26gene
carbonic anhydrasemaker-scaffold879_size85478-snap-gene-0.16gene
carbonic anhydrasesnap_masked-scaffold1_size3401120-processed-gene-7.32gene
carbonic anhydrase 2maker-scaffold239_size242058-snap-gene-1.26gene
carbonic anhydrase 2-likemaker-scaffold138_size318692-snap-gene-1.14gene
carbonic anhydrase 9-likemaker-scaffold1253_size52701-snap-gene-0.10gene
carbonic anhydrase-related protein 10-likemaker-scaffold56_size446035-snap-gene-1.6gene
carbonic anhydrase-related protein 10-likesnap_masked-scaffold459_size165548-processed-gene-0.16gene
carbon-nitrogen hydrolasemaker-scaffold231_size243715-snap-gene-1.36gene
carbonyl reductasesnap_masked-scaffold124_size330879-processed-gene-0.9gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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