Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
Tk12761Tk12761polypeptide
Tk12762Tk12762polypeptide
Tk12763Tk12763polypeptide
Tk12764Tk12764polypeptide
Tk12765Tk12765polypeptide
Tk12766Tk12766polypeptide
Tk12767Tk12767polypeptide
Tk12768Tk12768polypeptide
Tk12769Tk12769polypeptide
Tk12770Tk12770polypeptide
Tk12771Tk12771polypeptide
Tk12772Tk12772polypeptide
tlc domain-containing protein 2-likesnap_masked-scaffold1779_size28306-processed-gene-0.1gene
tld domain-containing protein kiaa1609 homologmaker-scaffold525_size146620-snap-gene-0.13gene
tm2 domain-containing protein cg10795 precursorsnap_masked-scaffold336_size202805-processed-gene-1.10gene
tm2 domain-containing protein cg10795 precursorsnap_masked-scaffold168_size293125-processed-gene-1.40gene
tm2 domain-containing protein cg11103snap_masked-scaffold632_size121914-processed-gene-0.10gene
tnf receptor-associated factor 3 isoform x3maker-scaffold259_size234575-snap-gene-0.11gene
tnf receptor-associated factor 3 isoform x3maker-scaffold131_size323982-snap-gene-0.17gene
toll maker-scaffold23_size669530-snap-gene-5.24gene
toll maker-scaffold230_size244653-snap-gene-1.22gene
tollip-like proteinsnap_masked-scaffold893_size84343-processed-gene-0.11gene
toll-like receptor 1maker-scaffold57_size444674-snap-gene-1.13gene
toll-like receptor 2-likemaker-scaffold130_size324016-snap-gene-1.14gene
tolloid-like protein 1maker-scaffold2567_size14419-snap-gene-0.5gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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