tnf receptor-associated factor 3 isoform x3, maker-scaffold131_size323982-snap-gene-0.17 (gene) Tigriopus kingsejongensis

Overview
Nametnf receptor-associated factor 3 isoform x3
Unique Namemaker-scaffold131_size323982-snap-gene-0.17
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of tnf receptor-associated factor 3 isoform x3 vs. L. salmonis genes
Match: EMLSAG00000008196 (supercontig:LSalAtl2s:LSalAtl2s494:238305:242533:1 gene:EMLSAG00000008196 transcript:EMLSAT00000008196 description:"snap_masked-LSalAtl2s494-processed-gene-2.3")

HSP 1 Score: 49.6766 bits (117), Expect = 4.010e-7
Identity = 56/239 (23.43%), Postives = 98/239 (41.00%), Query Frame = 0 
Query:   13 MRTWAIGRCLSSPYLTGATILVLTVLSVRHYSSMQENGDLLTRLETLQSQIKTDKF--------------NLQSLENSLTQKNTELDKMNHD------------------KTTFDEQIESRAEELRNKDTQILE--AEKAKVAAESQLGELQEQFRQCEE-----SKENAAENLNTSIVEKDQVIQDLKDRVAKLTDSQAGKPANKIAPFVEDRQLDPNLAGKLGDVDPSAVIVKNKAL 212
            M     GR + +PY   A IL++  L+++++S+      LL ++  L+ ++K+ K               NLQ+ +        + DK+  D                  K++ DE      E+L  ++ ++ E    ++  + E  L E +     C       SKEN  E   T + +  Q I +L   + +      G   N       D+Q  P+  G+L D+DP AVIVK+K +
Sbjct:    1 MLRGGAGRIIFTPYFLSANILIILFLTIKYWSASNYEFQLLNKVHILEIELKSCKTTLVNSEAEFKHKLENLQTCQTDFQALQNQFDKLTEDFKLKSLDYDRLRKKDDNNKSSLDELSRKCVEDL--EECRVFEDKCNQSLKSNEETLHEAKSALEDCSSFAKTVSKENQTE---TEMFK--QTINELNAELLQYKGHAKGSINNM------DKQHMPD--GELPDIDPEAVIVKSKPV 224
The following BLAST results are available for this feature:
BLAST of tnf receptor-associated factor 3 isoform x3 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000081964.010e-723.43supercontig:LSalAtl2s:LSalAtl2s494:238305:242533:1... [more]
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BLAST of tnf receptor-associated factor 3 isoform x3 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of tnf receptor-associated factor 3 isoform x3 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold131_size323982supercontigscaffold131_size323982:10645..12607 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold131_size323982-snap-gene-0.17-mRNA-1maker-scaffold131_size323982-snap-gene-0.17-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold131_size323982:10645..12607-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold131_size323982-snap-gene-0.17 ID=maker-scaffold131_size323982-snap-gene-0.17|Name=tnf receptor-associated factor 3 isoform x3|organism=Tigriopus kingsejongensis|type=gene|length=1963bp|location=Sequence derived from alignment at scaffold131_size323982:10645..12607- (Tigriopus kingsejongensis)
GTCGAGCACCGCTGCCCCGGGTGATTGGGCTTTCGTAGTCGAACCTTGGT
GACGTCGATTAACAAAAGGCTCTGGGCTTCACCGATCCAGTGCATGGGAT
TGAGGTGTCATATTTGGCTGGCTGTGAGAGCCTCAGCGAGTGGAGCCGGT
GAGCCAGCCTTCATGTCACAAGTGTATCACCCCGAATGCGTGATGCCTGG
TCTATTCCATCGTAAGCTTAGTTGGCCTCAGTCCTTGTTCATCAACTCGC
ACTACTCGGTGTCCCACTCAAACTCGTCTGAATCATTGTAATTGCCTGAA
TGGTGAACCAATACATCCGCGAAAGCGAATCTAAGATGCGAACCTGGGCC
ATAGGTCGCTGCCTCAGCTCACCTTACCTCACGGGGGCCACGATCCTGGT
GCTCACTGTCCTGAGCGTCCGCCATTATAGTTCCATGCAAGAGAATGGGG
ATCTCCTGACCCGATTGGAAACACTCCAGTCCCAGATCAAGACCGAGTAA
GTTCAAAATCCCAGGTTCTTGCCCGAATTACATGAGCGAGAACAGCCATG
ATTAATCCCTCTCCTTTAATTGCAGCAAGTTCAATCTGCAAAGCCTGGAA
AACTCCCTGACCCAGAAGAATACCGAACTGGACAAGATGAACCACGACAA
GACCACGTTCGACGAGCAAATCGAGTCCAGGGCAGAGGAGCTCCGCAACA
AGGACACTCAGATTCTGGAGGCCGAGAAGGCCAAGGTAACATGAAATGCC
CCGGTGATGCGAGCCCAGTCCCACATACGCCTCCCTCTCATCTAGGTCGC
TGCCGAGAGTCAGTTGGGTGAACTCCAGGAGCAATTCCGCCAATGCGAAG
AGAGCAAGGAGAATGCGGCGGAGAATCTCAACACCAGCATCGTGGAGAAG
GACCAAGTCATCCAAGACCTCAAGGATCGCGTGGCCAAATTGACCGACTC
CCAAGCTGGAAAACCGGCTAACAAAAGTTAATATCCCCACACCATTGATT
CTTCTGGAAGGCGGATTTAAATTTTAACACGCTCTAGTGGGGACTGGATC
CTCTTTTCGGCCATTTTGATGTGGAATGCATGACGTCTTCGGACTCTCAC
TCATTGGTTGTTGTAATAAAATTTCCCACCACCTCTTCCTAACAATGCTT
TCTGGCGGCAATGTCTTTGACCGTGCTAACTGATTCAACAAACCTGTGTT
AGCCATCCGTTCAAACCACCTTTCCCTTTTGTAGTTGCTCCATTCGTCGA
GGATCGCCAACTTGACCCTAACTTGGCTGGAAAACTTGGTGACGTGGATC
CCAGTGCAGTGATCGTGAAAAACAAAGCCCTTGAAGGTAAGTGAGTCATT
GTGAGTGGCCAATTGGGGATGGAAGGCTCATTGCTCTCCCTGTCCAAACA
TGGGGGTTGATTTCTCATCTGCACCAGGCATGAGATATCACAAGGATGAC
CAAGGGCGGTATCTCCCCATCTTGCCCCGGTCCCCTCCCAACGCCCCTCG
CCAGACTCATAGGTTCAGCGTGGTCGATATCCCGATGAAATATGGTCGGA
GGAGCATCTGATATCAGCCAAGTATGACGCACACACTAACACACACACAC
TGCTGCATGACCCTTCCACCTTATTTGACCTTTTACACAGAAATAACTCT
GTCCGGTACTCATTTTAGACAACAATGCAACCATGTTGAACGAGACCATG
GCCAATATAAAGAACAGTGAGGAGGGCACCATGAATGACACCACCACAGA
GGCTCCGGGCAAGCCAGCCAATACAACCACACCCATATCGGAGGACGAAG
TGCCCGAAGTCGAAAAGAAAGACGAAAGGAATGCCCAAAATGGTAAAAGA
TTAAGAGTTCAATAATCCCGACTGGGTTTGAAGTAGTGCTTTATCAAACA
GCTCCAGAGAAGCCAGTGCCAACGGCAGATGTGGCCGAGGATGAGGATGA
CTCGAAGCCCTAA
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Synonyms
The feature 'tnf receptor-associated factor 3 isoform x3' has the following synonyms
Synonym
Tk05543
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