Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
tubulin alpha-4a chain-likesnap_masked-scaffold301_size216225-processed-gene-1.1gene
tubulin beta-2a chainmaker-scaffold58_size443543-snap-gene-2.11gene
tubulin beta-4b chain-likemaker-scaffold451_size166902-snap-gene-0.16gene
tubulin beta-4b chain-likemaker-scaffold1191_size56271-snap-gene-0.15gene
tubulin beta-4b chain-likemaker-scaffold407_size180809-snap-gene-0.28gene
tubulin beta-7 chainsnap_masked-scaffold1191_size56271-processed-gene-0.2gene
tubulin beta chainmaker-scaffold319_size207808-snap-gene-1.18gene
tubulin folding cofactor bmaker-scaffold106_size358372-snap-gene-0.14gene
tubulin gamma-2 chainmaker-scaffold157_size297442-snap-gene-1.26gene
tubulin polyglutamylase ttll4maker-scaffold10_size831480-snap-gene-0.19gene
tubulin-specific chaperone dmaker-scaffold198_size266703-snap-gene-0.21gene
tubulin-specific chaperone emaker-scaffold38_size502422-snap-gene-2.19gene
tubulin--tyrosine ligase-like protein 12snap_masked-scaffold702_size109376-processed-gene-0.1gene
tudor and kh domain-containing proteinmaker-scaffold83_size396513-snap-gene-1.19gene
tudor and kh domain-containing proteinmaker-scaffold948_size77650-snap-gene-0.13gene
tudor domain-containing protein 12maker-scaffold578_size132436-snap-gene-0.28gene
tudor domain-containing protein 1 isoform x2maker-scaffold370_size193435-snap-gene-0.34gene
tudor domain-containing protein 5maker-scaffold9_size846264-snap-gene-4.23gene
tuftelin-interacting protein 11snap_masked-scaffold337_size202799-processed-gene-1.15gene
tumor necrosis factor alpha-induced protein 3 isoform x2snap_masked-scaffold415_size178368-processed-gene-0.19gene
tumor necrosis factor alpha-induced protein 8-like proteinmaker-scaffold339_size202159-snap-gene-1.21gene
tumor necrosis factor receptor superfamily member 11bmaker-scaffold7597_size3096-snap-gene-0.1gene
tumor susceptibility gene 101 protein isoform x2snap_masked-scaffold19_size710362-processed-gene-1.3gene
twinkle mitochondrialmaker-scaffold17_size721972-snap-gene-1.22gene
twitchin isoform x3maker-scaffold203_size261420-snap-gene-1.27gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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