Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
amp dependent coa partialmaker-scaffold974_size74728-snap-gene-0.19gene
amp dependent ligasemaker-scaffold1931_size24754-snap-gene-0.9gene
amp dependent ligasemaker-scaffold349_size200065-snap-gene-1.27gene
amp-dependent synthetasesnap_masked-scaffold2_size2283618-processed-gene-10.9gene
amphicalbinsnap_masked-scaffold528_size145933-processed-gene-0.17gene
amphiphysin-like isoform x2maker-scaffold964_size76271-snap-gene-0.12gene
amylase-binding proteinmaker-scaffold758_size101577-snap-gene-0.20gene
amyloid beta a4 precursor protein-binding family b member 1-interacting protein isoform x3maker-scaffold799_size95547-snap-gene-0.8gene
amyloid beta a4 precursor protein-binding family b member 1-interacting protein isoform x5maker-scaffold1646_size32207-snap-gene-0.6gene
amyloid beta a4 precursor protein-binding family b member 2-like isoform x3snap_masked-scaffold182_size278544-processed-gene-1.6gene
amyloid beta protein-binding member 1interactingmaker-scaffold320_size207635-snap-gene-1.17gene
amyloid protein-binding protein 2maker-scaffold1282_size50771-snap-gene-0.18gene
amyloid protein-binding protein 2maker-scaffold1962_size23816-snap-gene-0.8gene
an1-type zinc finger protein 1 isoform 2snap_masked-scaffold349_size200065-processed-gene-1.16gene
an1-type zinc finger protein 4-likemaker-scaffold45_size475391-snap-gene-1.12gene
anaphase-promoting complex subunit 11snap_masked-scaffold321_size207582-processed-gene-1.4gene
anaphase-promoting complex subunit 4snap_masked-scaffold774_size99688-processed-gene-0.8gene
anaphase-promoting complex subunit 4snap_masked-scaffold934_size79169-processed-gene-0.15gene
anaphase-promoting complex subunit 7maker-scaffold201_size263271-snap-gene-1.24gene
anaphase-promoting complex subunit 7maker-scaffold575_size133042-snap-gene-0.28gene
anaphase-promoting complex subunit cdc26maker-scaffold59_size442576-snap-gene-3.24gene
and ph domain-containingmaker-scaffold1172_size57289-snap-gene-0.6gene
and ph domain-containing protein 4maker-scaffold365_size194585-snap-gene-0.22gene
and ph domain-containing protein 6maker-scaffold1707_size30527-snap-gene-0.7gene
and pleckstrin domain-containing protein partialsnap_masked-scaffold85_size395806-processed-gene-0.0gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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