Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
bccip homologmaker-scaffold1334_size47063-snap-gene-0.11gene
b-cell lymphomasnap_masked-scaffold421_size176100-processed-gene-0.20gene
b-cell lymphoma 3-encoded proteinsnap_masked-scaffold78_size404448-processed-gene-2.3gene
b-cell receptor-associated protein 31maker-scaffold871_size86487-snap-gene-0.30gene
bchain inhibited fragment of ets-1 and paired domain of pax5 bound to dnamaker-scaffold526_size146413-snap-gene-0.26gene
bcl2 adenovirus e1b 19 kda protein-interactingmaker-scaffold297_size217559-snap-gene-0.32gene
bcl-2-related ovarian killer protein homolog amaker-scaffold549_size139405-snap-gene-0.22gene
bcl9-like partialmaker-scaffold217_size252476-snap-gene-0.16gene
bcs-1 proteinmaker-scaffold336_size202805-snap-gene-1.55gene
bcs-1 proteinmaker-scaffold1142_size59991-snap-gene-0.14gene
bcs-1 proteinmaker-scaffold132_size323655-snap-gene-2.26gene
bcs-1 proteinmaker-scaffold1514_size37881-snap-gene-0.6gene
bcs-1 proteinmaker-scaffold1672_size31643-snap-gene-0.7gene
bcs-1 proteinmaker-scaffold1860_size26228-snap-gene-0.3gene
bcs-1 proteinmaker-scaffold1981_size23315-snap-gene-0.5gene
bcs-1 proteinmaker-scaffold5509_size4573-snap-gene-0.4gene
bcs-1 proteinmaker-scaffold646_size120253-snap-gene-0.19gene
bcs-1 proteinsnap_masked-scaffold136_size321413-processed-gene-1.0gene
bcs-1 proteinsnap_masked-scaffold558_size137302-processed-gene-0.8gene
beat proteinmaker-scaffold1190_size56274-snap-gene-0.7gene
beat proteinmaker-scaffold394_size185225-snap-gene-0.23gene
beat proteinmaker-scaffold9_size846264-snap-gene-4.19gene
best1_pig ame: fullsnap_masked-scaffold251_size238241-processed-gene-1.5gene
bestrophin 2maker-scaffold224_size251237-snap-gene-0.19gene
Bestrophin-2 maker-scaffold231_size243715-snap-gene-1.38gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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