Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
beta-hexosaminidase subunit alpha-likemaker-scaffold122_size333723-snap-gene-2.35gene
beta-ig-h3 fasciclinmaker-scaffold1_size3401120-snap-gene-16.43gene
betaine-aldehyde dehydrogenasemaker-scaffold118_size336992-snap-gene-1.0gene
betaine-aldehyde dehydrogenasemaker-scaffold2819_size12141-snap-gene-0.0gene
betaine-aldehyde dehydrogenasesnap_masked-scaffold5340_size4734-processed-gene-0.0gene
betaine-aldehyde dehydrogenasesnap_masked-scaffold7854_size2979-processed-gene-0.0gene
beta-ketoadipyl thiolasesnap_masked-scaffold10346_size2213-processed-gene-0.0gene
beta-ketoadipyl thiolasesnap_masked-scaffold1_size3401120-processed-gene-7.8gene
beta-lactamasemaker-scaffold1116_size61586-snap-gene-0.11gene
beta-lactamasemaker-scaffold121_size336169-snap-gene-2.40gene
beta-lactamase class c and other penicillin binding proteinmaker-scaffold1361_size45676-snap-gene-0.8gene
beta-lactamase class c and other penicillin binding proteinmaker-scaffold50_size457468-snap-gene-1.14gene
beta-lactamase induction signal transducermaker-scaffold483_size159862-snap-gene-0.29gene
beta-lactamase-like protein 2 homologmaker-scaffold1088_size63410-snap-gene-0.15gene
beta- -mannanase precursormaker-scaffold34_size539781-snap-gene-3.21gene
Beta-mannosidasemaker-scaffold41_size498431-snap-gene-1.17gene
Beta-mannosidasemaker-scaffold5_size1054832-snap-gene-4.13gene
beta- -n-acetylgalactosaminyltransferase bre-4maker-scaffold213_size254208-snap-gene-1.27gene
beta- -n-acetylgalactosaminyltransferase bre-4maker-scaffold831_size90909-snap-gene-0.21gene
beta- -n-acetylgalactosaminyltransferase bre-4-likemaker-scaffold612_size124412-snap-gene-0.25gene
beta-N-acetylglucosaminidasesnap_masked-scaffold522_size146686-processed-gene-0.0gene
beta-N-acetylhexosaminidasemaker-scaffold2464_size15419-snap-gene-0.3gene
beta-N-acetylhexosaminidasemaker-scaffold4849_size5325-snap-gene-0.1gene
Beta-parvinmaker-scaffold858_size87625-snap-gene-0.11gene
bicaudal d-related protein homologmaker-scaffold209_size256900-snap-gene-1.29gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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