Lepeophtheirus salmonis

Overview
Full NameLepeophtheirus salmonis
GenusLepeophtheirus
Speciessalmonis
Common Namesalmon louse
AbbreviationL. salmonis

 

The salmon louse (Lepeophtheirus salmonis) is an ectoparasitic copepod feeding on skin, mucous and blood from salmonid hosts. Recently it was shown that L. salmonis infections in farmed fish induce epizootics in wild fish [1,2]. The life cycle of L.salmonis consists of 8 developmental stages separated by ecdysis [3,4] and after the final molt, females develop into mature adults that continuously produce eggs for life. The first free-living larvae (naupli I) hatch directly from egg-strings attached to adult females and all three larval stages (naupli I, naupli II and the infectious copepidid stage) can be transported by the ocean currents over large distances depending on hydrographical conditions [5]. After host settlement the infectious copepodids stage molt into chalimus. The two chalimus stages, all separated by molting, are anchored to the host by a frontal filament [6], which restricts the feeding area. However, in the succeeding pre-ad I and -II and adult stages the salmon louse can move unrestricted on the host surface resulting in increased virulence [7].

Image
Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon60,033
protein26,409
gene13,135
mRNA13,129
tRNA344
snRNA83
snoRNA22
pseudogenic_tRNA17
miRNA9
rRNA8
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
EMLSAG00000002476EMLSAG00000002476-685242gene
EMLSAG00000002477EMLSAG00000002477-685243gene
EMLSAG00000002478EMLSAG00000002478-685244gene
EMLSAG00000002479EMLSAG00000002479-685245gene
EMLSAG00000002480EMLSAG00000002480-685246gene
EMLSAG00000002481EMLSAG00000002481-685247gene
EMLSAG00000002482EMLSAG00000002482-685248gene
EMLSAG00000002483EMLSAG00000002483-685249gene
EMLSAG00000002484EMLSAG00000002484-685250gene
EMLSAG00000002485EMLSAG00000002485-685251gene
EMLSAG00000002486EMLSAG00000002486-685252gene
EMLSAG00000002487EMLSAG00000002487-685253gene
EMLSAG00000002488EMLSAG00000002488-685254gene
EMLSAG00000002489EMLSAG00000002489-685255gene
EMLSAG00000002490EMLSAG00000002490-685256gene
EMLSAG00000002491EMLSAG00000002491-685257gene
EMLSAG00000002492EMLSAG00000002492-685258gene
EMLSAG00000002493EMLSAG00000002493-685259gene
EMLSAG00000002494EMLSAG00000002494-685260gene
EMLSAG00000002495EMLSAG00000002495-685261gene
EMLSAG00000002496EMLSAG00000002496-685262gene
EMLSAG00000002497EMLSAG00000002497-685263gene
EMLSAG00000002498EMLSAG00000002498-685264gene
EMLSAG00000002499EMLSAG00000002499-685265gene
EMLSAG00000002500EMLSAG00000002500-685266gene

Pages

Downloads

The following annotation files are available for download:

Structural Annotations

L. salmonis assembly v1.0 scaffolds (FASTA format, zipped) LSalAtl2s.fasta.zip
L. salmonis protein coding gene sequences (FASTA format, zipped) Lepeophtheirus_salmonis_6.LSalAtl2s.19.pep.all.fa.zip
L. salmonis v1.0 protein coding and non-coding gene predictions (GFF3 format, zipped) Lepeophtheirus_salmonis_6.LSalAtl2s.19.final.gff3.zip
L. salmonis v1.0 only protein coding gene predictions (GFF3 format, zipped) Lepeophtheirus_salmonis_6.LSalAtl2s.19.1proteincoding-only.gff3.zip

Functional Annotations

Blast analysis

BlastP of all L. salmonis predicted peptides vs GenBank (NCBI NR) (various formats, gzip) asn1 [702 MB] | tab [39 MB] | xml [287 MB] | blast [368 MB]

[.asn1: blast archive, .tab: tabular text, .xml: XML format, .blast: default blast alignment] 

tab, xml, and blast are limited to 100 hits per query

 
Blastp of all predicted peptide sequences vs. SwissProt (various formats, gzip) asn1 [180 MB] | tab [23 MB] | xml [151 MB] | blast [178 MB]
   
Blastp of all L. salmonis predicted peptides vs GO (XML format, zipped) blastgo.zip

 

InterProScan, GO, and KEGG

   
InterProScan 5 analysis of L. salmonis peptides (XML format, zipped) Lepeophtheirus_salmonis_6.LSalAtl2s.19.pep.all.fa.xml.zip
InterProScan 5 analysis of L. salmonis peptides (tabular format, zipped) Lepeophtheirus_salmonis_6.LSalAtl2s.19.pep.all.fa.tsv.zip
InterProScan 5 analysis of L. salmonis peptides (gff3 format, zipped) Lepeophtheirus_salmonis_6.LSalAtl2s.19.pep.all.fa.gff3.zip
InterProScan 5 analysis of L. salmonis peptides (HTML pages, zipped) interprohtml.zip
KEGG analysis of L. salmonis peptide (KEGG hier format, tar.gz) hier.tar.gz
KEGG analysis of L. salmonis peptide (all KEGG maps, tar.gz) map.tar.gz
Gene Ontology (GO) assignments of L. salmonis peptides based on InterProScan GO terms (gaf format) Lsal.GO.gaf
GO-slims (generic) assignment of L. salmonis peptides based on InterProScan GO terms (gaf format) Lsal.GO-slim_generic.gaf
All RNA-seq data for each ENSEMBL-transcript as shown in the Genome Browser track. TMM/CPM normalized in CSV format.  cpmall.csv.zip