EMLSAG00000000871, EMLSAG00000000871-683637 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000871
Unique NameEMLSAG00000000871-683637
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000871 vs. GO
Match: - (symbol:RPL11 "60S ribosomal protein L11" species:9823 "Sus scrofa" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0034504 "protein localization to nucleus" evidence=ISS] InterPro:IPR002132 InterPro:IPR020929 Pfam:PF00281 Pfam:PF00673 PIRSF:PIRSF002161 PROSITE:PS00358 GO:GO:0005730 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 GO:GO:0034504 Gene3D:3.30.1440.10 InterPro:IPR022803 PANTHER:PTHR11994 SUPFAM:SSF55282 KO:K02868 CTD:6135 HOVERGEN:HBG055214 EMBL:AY547313 EMBL:AY550042 EMBL:F14532 RefSeq:NP_001001638.1 UniGene:Ssc.56710 ProteinModelPortal:Q29205 SMR:Q29205 GeneID:414422 KEGG:ssc:414422 Uniprot:Q29205)

HSP 1 Score: 47.3654 bits (111), Expect = 1.413e-6
Identity = 35/117 (29.91%), Postives = 52/117 (44.44%), Query Frame = 0 
Query:    1 MSEYCDRLNCAAKMLQSITVQTLVFSKAWYN-DVYGFRCNKKITVQSTV-----------------FETLALVFRNTLTW-----------LSRTXSLSVFMYDLYIVLGRASMNVS 88
            + E  DRL  AAK+L+ +T QT VFSKA Y    +G R N+KI V  TV                 +E     F +T  +           +    S+ ++  D Y+VLGR   +++
Sbjct:   26 VGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIA 142
[Close]
BLAST of EMLSAG00000000871 vs. GO
Match: - (symbol:rpl11 "ribosomal protein L11" species:7955 "Danio rerio" [GO:0005622 "intracellular" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0009790 "embryo development" evidence=IMP] [GO:0042593 "glucose homeostasis" evidence=IMP] [GO:0030218 "erythrocyte differentiation" evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0006915 "apoptotic process" evidence=IMP] InterPro:IPR002132 InterPro:IPR020929 Pfam:PF00281 Pfam:PF00673 PIRSF:PIRSF002161 PROSITE:PS00358 ZFIN:ZDB-GENE-040625-147 GO:GO:0006915 GO:GO:0006412 GO:GO:0042593 GO:GO:0005840 GO:GO:0009790 GO:GO:0030218 GO:GO:0003735 eggNOG:COG0094 Gene3D:3.30.1440.10 InterPro:IPR022803 PANTHER:PTHR11994 SUPFAM:SSF55282 HOGENOM:HOG000231312 KO:K02868 OMA:EDTMAWF GeneTree:ENSGT00390000013411 CTD:6135 HOVERGEN:HBG055214 OrthoDB:EOG7ZPNMB TreeFam:TF300017 EMBL:CABZ01086825 EMBL:BC071420 EMBL:AY648841 RefSeq:NP_001002139.1 UniGene:Dr.32573 STRING:7955.ENSDARP00000063869 Ensembl:ENSDART00000063870 GeneID:415229 KEGG:dre:415229 InParanoid:Q6IQI6 NextBio:20818895 PRO:PR:Q6IQI6 Uniprot:Q6IQI6)

HSP 1 Score: 47.3654 bits (111), Expect = 1.442e-6
Identity = 35/117 (29.91%), Postives = 52/117 (44.44%), Query Frame = 0 
Query:    1 MSEYCDRLNCAAKMLQSITVQTLVFSKAWYN-DVYGFRCNKKITVQSTV-----------------FETLALVFRNTLTW-----------LSRTXSLSVFMYDLYIVLGRASMNVS 88
            + E  DRL  AAK+L+ +T QT VFSKA Y    +G R N+KI V  TV                 +E     F +T  +           +    S+ ++  D Y+VLGR   +++
Sbjct:   26 VGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIA 142
[Close]
BLAST of EMLSAG00000000871 vs. GO
Match: - (symbol:TCEB3 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] InterPro:IPR002132 InterPro:IPR020929 Pfam:PF00281 Pfam:PF00673 PIRSF:PIRSF002161 PROSITE:PS00358 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GeneTree:ENSGT00390000002428 Gene3D:3.30.1440.10 InterPro:IPR022803 PANTHER:PTHR11994 SUPFAM:SSF55282 TreeFam:TF300017 EMBL:AADN03008251 PRIDE:E1C3K3 Ensembl:ENSGALT00000006305 PRO:PR:E1C3K3 Uniprot:E1C3K3)

HSP 1 Score: 47.3654 bits (111), Expect = 1.495e-6
Identity = 35/117 (29.91%), Postives = 52/117 (44.44%), Query Frame = 0 
Query:    1 MSEYCDRLNCAAKMLQSITVQTLVFSKAWYN-DVYGFRCNKKITVQSTV-----------------FETLALVFRNTLTW-----------LSRTXSLSVFMYDLYIVLGRASMNVS 88
            + E  DRL  AAK+L+ +T QT VFSKA Y    +G R N+KI V  TV                 +E     F +T  +           +    S+ ++  D Y+VLGR   +++
Sbjct:   25 VGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIA 141
[Close]
BLAST of EMLSAG00000000871 vs. GO
Match: - (symbol:Rpl11 "60S ribosomal protein L11" species:10116 "Rattus norvegicus" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006364 "rRNA processing" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0006605 "protein targeting" evidence=IEA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA] [GO:0034504 "protein localization to nucleus" evidence=ISS] [GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA] InterPro:IPR002132 InterPro:IPR020929 Pfam:PF00281 Pfam:PF00673 PIRSF:PIRSF002161 PROSITE:PS00358 RGD:1308681 GO:GO:0006605 GO:GO:0005730 GO:GO:0006412 GO:GO:0003735 GO:GO:0042273 GO:GO:0019843 GO:GO:0034504 GO:GO:0006364 GO:GO:0022625 eggNOG:COG0094 Gene3D:3.30.1440.10 InterPro:IPR022803 PANTHER:PTHR11994 SUPFAM:SSF55282 HOGENOM:HOG000231312 OMA:EDTMAWF GeneTree:ENSGT00390000013411 HOVERGEN:HBG055214 OrthoDB:EOG7ZPNMB TreeFam:TF300017 NextBio:23831 EMBL:X62146 PIR:JT0606 RefSeq:XP_006239286.1 UniGene:Rn.14687 ProteinModelPortal:P62914 SMR:P62914 IntAct:P62914 MINT:MINT-4579402 PaxDb:P62914 PRIDE:P62914 Ensembl:ENSRNOT00000030043 GeneID:362631 UCSC:RGD:1308681 InParanoid:P62914 PRO:PR:P62914 ArrayExpress:P62914 Genevestigator:P62914 Uniprot:P62914)

HSP 1 Score: 47.3654 bits (111), Expect = 1.681e-6
Identity = 35/117 (29.91%), Postives = 52/117 (44.44%), Query Frame = 0 
Query:    1 MSEYCDRLNCAAKMLQSITVQTLVFSKAWYN-DVYGFRCNKKITVQSTV-----------------FETLALVFRNTLTW-----------LSRTXSLSVFMYDLYIVLGRASMNVS 88
            + E  DRL  AAK+L+ +T QT VFSKA Y    +G R N+KI V  TV                 +E     F +T  +           +    S+ ++  D Y+VLGR   +++
Sbjct:   26 VGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIA 142
[Close]
BLAST of EMLSAG00000000871 vs. GO
Match: - (symbol:Rpl11 "ribosomal protein L11" species:10116 "Rattus norvegicus" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;ISS] [GO:0006364 "rRNA processing" evidence=IEA;ISO] [GO:0006412 "translation" evidence=IEA] [GO:0006605 "protein targeting" evidence=IEA;ISO] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA;ISO] [GO:0034504 "protein localization to nucleus" evidence=ISO;ISS] [GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA;ISO] [GO:0044822 "poly(A) RNA binding" evidence=ISO] [GO:0070062 "extracellular vesicular exosome" evidence=ISO] InterPro:IPR002132 InterPro:IPR020929 Pfam:PF00281 Pfam:PF00673 PIRSF:PIRSF002161 PROSITE:PS00358 RGD:1308681 GO:GO:0006605 GO:GO:0005730 GO:GO:0006412 GO:GO:0003735 GO:GO:0042273 GO:GO:0019843 GO:GO:0034504 GO:GO:0006364 GO:GO:0022625 eggNOG:COG0094 Gene3D:3.30.1440.10 InterPro:IPR022803 PANTHER:PTHR11994 SUPFAM:SSF55282 HOGENOM:HOG000231312 OMA:EDTMAWF GeneTree:ENSGT00390000013411 HOVERGEN:HBG055214 OrthoDB:EOG7ZPNMB TreeFam:TF300017 NextBio:23831 EMBL:X62146 PIR:JT0606 RefSeq:XP_006239286.1 UniGene:Rn.14687 ProteinModelPortal:P62914 SMR:P62914 IntAct:P62914 MINT:MINT-4579402 PaxDb:P62914 PRIDE:P62914 Ensembl:ENSRNOT00000030043 GeneID:362631 UCSC:RGD:1308681 InParanoid:P62914 PRO:PR:P62914 ArrayExpress:P62914 Genevestigator:P62914 Uniprot:P62914)

HSP 1 Score: 47.3654 bits (111), Expect = 1.681e-6
Identity = 35/117 (29.91%), Postives = 52/117 (44.44%), Query Frame = 0 
Query:    1 MSEYCDRLNCAAKMLQSITVQTLVFSKAWYN-DVYGFRCNKKITVQSTV-----------------FETLALVFRNTLTW-----------LSRTXSLSVFMYDLYIVLGRASMNVS 88
            + E  DRL  AAK+L+ +T QT VFSKA Y    +G R N+KI V  TV                 +E     F +T  +           +    S+ ++  D Y+VLGR   +++
Sbjct:   26 VGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIA 142
[Close]
BLAST of EMLSAG00000000871 vs. GO
Match: - (symbol:Rpl11 "ribosomal protein L11" species:10090 "Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006364 "rRNA processing" evidence=ISO] [GO:0006412 "translation" evidence=IEA] [GO:0006605 "protein targeting" evidence=ISO] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0034504 "protein localization to nucleus" evidence=IMP] [GO:0042273 "ribosomal large subunit biogenesis" evidence=ISO] [GO:0044822 "poly(A) RNA binding" evidence=ISO] [GO:0070062 "extracellular vesicular exosome" evidence=ISO] InterPro:IPR002132 InterPro:IPR020929 Pfam:PF00281 Pfam:PF00673 PIRSF:PIRSF002161 PROSITE:PS00358 MGI:MGI:1914275 GO:GO:0006605 GO:GO:0005730 GO:GO:0006412 GO:GO:0003735 GO:GO:0042273 GO:GO:0019843 GO:GO:0034504 GO:GO:0006364 GO:GO:0022625 eggNOG:COG0094 Gene3D:3.30.1440.10 InterPro:IPR022803 PANTHER:PTHR11994 SUPFAM:SSF55282 HOGENOM:HOG000231312 KO:K02868 OMA:EDTMAWF GeneTree:ENSGT00390000013411 CTD:6135 HOVERGEN:HBG055214 OrthoDB:EOG7ZPNMB TreeFam:TF300017 EMBL:AK002998 EMBL:AK008422 EMBL:AK011211 EMBL:AK011800 EMBL:AK013923 EMBL:AK088967 EMBL:AK153486 EMBL:AK164445 EMBL:AK169053 EMBL:BC025077 EMBL:BC069896 RefSeq:NP_080195.1 UniGene:Mm.276856 ProteinModelPortal:Q9CXW4 SMR:Q9CXW4 BioGrid:211883 IntAct:Q9CXW4 MINT:MINT-1859586 PhosphoSite:Q9CXW4 PaxDb:Q9CXW4 PRIDE:Q9CXW4 Ensembl:ENSMUST00000102536 GeneID:67025 KEGG:mmu:67025 UCSC:uc008vhr.1 NextBio:323340 PRO:PR:Q9CXW4 ArrayExpress:Q9CXW4 Bgee:Q9CXW4 CleanEx:MM_RPL11 Genevestigator:Q9CXW4 Uniprot:Q9CXW4)

HSP 1 Score: 47.3654 bits (111), Expect = 1.681e-6
Identity = 35/117 (29.91%), Postives = 52/117 (44.44%), Query Frame = 0 
Query:    1 MSEYCDRLNCAAKMLQSITVQTLVFSKAWYN-DVYGFRCNKKITVQSTV-----------------FETLALVFRNTLTW-----------LSRTXSLSVFMYDLYIVLGRASMNVS 88
            + E  DRL  AAK+L+ +T QT VFSKA Y    +G R N+KI V  TV                 +E     F +T  +           +    S+ ++  D Y+VLGR   +++
Sbjct:   26 VGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIA 142
[Close]
BLAST of EMLSAG00000000871 vs. GO
Match: - (symbol:RPL11 "60S ribosomal protein L11" species:34839 "Chinchilla lanigera" [GO:0005730 "nucleolus" evidence=ISS] [GO:0034504 "protein localization to nucleus" evidence=ISS] InterPro:IPR002132 InterPro:IPR020929 Pfam:PF00281 Pfam:PF00673 PIRSF:PIRSF002161 PROSITE:PS00358 GO:GO:0005730 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 GO:GO:0034504 Gene3D:3.30.1440.10 InterPro:IPR022803 PANTHER:PTHR11994 SUPFAM:SSF55282 CTD:6135 HOVERGEN:HBG055214 EMBL:AY533222 RefSeq:NP_001269300.1 ProteinModelPortal:Q6QMZ8 SMR:Q6QMZ8 IntAct:Q6QMZ8 MINT:MINT-6733032 PRIDE:Q6QMZ8 GeneID:102017736 Uniprot:Q6QMZ8)

HSP 1 Score: 47.3654 bits (111), Expect = 1.681e-6
Identity = 35/117 (29.91%), Postives = 52/117 (44.44%), Query Frame = 0 
Query:    1 MSEYCDRLNCAAKMLQSITVQTLVFSKAWYN-DVYGFRCNKKITVQSTV-----------------FETLALVFRNTLTW-----------LSRTXSLSVFMYDLYIVLGRASMNVS 88
            + E  DRL  AAK+L+ +T QT VFSKA Y    +G R N+KI V  TV                 +E     F +T  +           +    S+ ++  D Y+VLGR   +++
Sbjct:   26 VGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIA 142
[Close]
BLAST of EMLSAG00000000871 vs. GO
Match: - (symbol:RPL11 "60S ribosomal protein L11" species:9823 "Sus scrofa" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0006605 "protein targeting" evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA] InterPro:IPR002132 InterPro:IPR020929 Pfam:PF00281 Pfam:PF00673 PIRSF:PIRSF002161 PROSITE:PS00358 GO:GO:0006605 GO:GO:0005730 GO:GO:0006412 GO:GO:0003735 GO:GO:0042273 GO:GO:0006364 GO:GO:0022625 Gene3D:3.30.1440.10 InterPro:IPR022803 PANTHER:PTHR11994 SUPFAM:SSF55282 OMA:EDTMAWF GeneTree:ENSGT00390000013411 OrthoDB:EOG7ZPNMB TreeFam:TF300017 EMBL:FP475977 ProteinModelPortal:I3LD74 SMR:I3LD74 PRIDE:I3LD74 Ensembl:ENSSSCT00000022802 Uniprot:I3LD74)

HSP 1 Score: 47.3654 bits (111), Expect = 1.681e-6
Identity = 35/117 (29.91%), Postives = 52/117 (44.44%), Query Frame = 0 
Query:    1 MSEYCDRLNCAAKMLQSITVQTLVFSKAWYN-DVYGFRCNKKITVQSTV-----------------FETLALVFRNTLTW-----------LSRTXSLSVFMYDLYIVLGRASMNVS 88
            + E  DRL  AAK+L+ +T QT VFSKA Y    +G R N+KI V  TV                 +E     F +T  +           +    S+ ++  D Y+VLGR   +++
Sbjct:   26 VGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIA 142
[Close]
BLAST of EMLSAG00000000871 vs. GO
Match: - (symbol:RPL11 "60S ribosomal protein L11" species:9606 "Homo sapiens" [GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0003735 "structural constituent of ribosome" evidence=NAS] [GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=TAS] [GO:0006364 "rRNA processing" evidence=IMP] [GO:0006412 "translation" evidence=NAS;TAS] [GO:0006413 "translational initiation" evidence=TAS] [GO:0006414 "translational elongation" evidence=TAS] [GO:0006415 "translational termination" evidence=TAS] [GO:0006605 "protein targeting" evidence=IMP] [GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral process" evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019058 "viral life cycle" evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA] [GO:0034504 "protein localization to nucleus" evidence=ISS] [GO:0042273 "ribosomal large subunit biogenesis" evidence=IMP] [GO:0044267 "cellular protein metabolic process" evidence=TAS] [GO:0044822 "poly(A) RNA binding" evidence=IDA] [GO:0070062 "extracellular vesicular exosome" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015 InterPro:IPR002132 InterPro:IPR020929 Pfam:PF00281 Pfam:PF00673 PIRSF:PIRSF002161 PROSITE:PS00358 GO:GO:0070062 Reactome:REACT_116125 GO:GO:0005730 GO:GO:0000184 GO:GO:0006413 GO:GO:0003723 GO:GO:0003735 GO:GO:0042273 GO:GO:0019843 GO:GO:0034504 GO:GO:0006364 GO:GO:0006415 GO:GO:0006414 Reactome:REACT_1762 GO:GO:0006614 GO:GO:0022625 GO:GO:0019083 eggNOG:COG0094 Gene3D:3.30.1440.10 InterPro:IPR022803 PANTHER:PTHR11994 SUPFAM:SSF55282 PDB:3J3B PDBsum:3J3B HOGENOM:HOG000231312 KO:K02868 OMA:EDTMAWF CTD:6135 HOVERGEN:HBG055214 OrthoDB:EOG7ZPNMB TreeFam:TF300017 ChiTaRS:RPL11 EMBL:X79234 EMBL:L05092 EMBL:AF101385 EMBL:BC018970 EMBL:AF432212 EMBL:AB007171 PIR:S45049 RefSeq:NP_000966.2 RefSeq:NP_001186731.1 UniGene:Hs.719951 ProteinModelPortal:P62913 SMR:P62913 BioGrid:112055 IntAct:P62913 MINT:MINT-1140097 STRING:9606.ENSP00000363676 PhosphoSite:P62913 DMDM:51702795 SWISS-2DPAGE:P62913 PaxDb:P62913 PRIDE:P62913 DNASU:6135 Ensembl:ENST00000374550 GeneID:6135 KEGG:hsa:6135 UCSC:uc001bhk.3 UCSC:uc001bhl.3 GeneCards:GC01P024018 HGNC:HGNC:10301 HPA:HPA002734 MIM:604175 MIM:612562 neXtProt:NX_P62913 Orphanet:124 PharmGKB:PA34664 InParanoid:P62913 PhylomeDB:P62913 GeneWiki:RPL11 GenomeRNAi:6135 NextBio:23831 PMAP-CutDB:P62913 PRO:PR:P62913 ArrayExpress:P62913 Bgee:P62913 CleanEx:HS_RPL11 Genevestigator:P62913 Uniprot:P62913)

HSP 1 Score: 47.3654 bits (111), Expect = 1.681e-6
Identity = 35/117 (29.91%), Postives = 52/117 (44.44%), Query Frame = 0 
Query:    1 MSEYCDRLNCAAKMLQSITVQTLVFSKAWYN-DVYGFRCNKKITVQSTV-----------------FETLALVFRNTLTW-----------LSRTXSLSVFMYDLYIVLGRASMNVS 88
            + E  DRL  AAK+L+ +T QT VFSKA Y    +G R N+KI V  TV                 +E     F +T  +           +    S+ ++  D Y+VLGR   +++
Sbjct:   26 VGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIA 142
[Close]
BLAST of EMLSAG00000000871 vs. GO
Match: - (symbol:RPL11 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] InterPro:IPR002132 InterPro:IPR020929 Pfam:PF00281 Pfam:PF00673 PIRSF:PIRSF002161 PROSITE:PS00358 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.30.1440.10 InterPro:IPR022803 PANTHER:PTHR11994 SUPFAM:SSF55282 KO:K02868 OMA:EDTMAWF GeneTree:ENSGT00390000013411 CTD:6135 OrthoDB:EOG7ZPNMB TreeFam:TF300017 PDB:2ZKR PDBsum:2ZKR EMBL:AAEX03001751 RefSeq:NP_001240835.1 UniGene:Cfa.39464 ProteinModelPortal:E2R9G7 SMR:E2R9G7 PRIDE:E2R9G7 Ensembl:ENSCAFT00000035556 GeneID:100684296 KEGG:cfa:100684296 Uniprot:E2R9G7)

HSP 1 Score: 47.3654 bits (111), Expect = 1.681e-6
Identity = 35/117 (29.91%), Postives = 52/117 (44.44%), Query Frame = 0 
Query:    1 MSEYCDRLNCAAKMLQSITVQTLVFSKAWYN-DVYGFRCNKKITVQSTV-----------------FETLALVFRNTLTW-----------LSRTXSLSVFMYDLYIVLGRASMNVS 88
            + E  DRL  AAK+L+ +T QT VFSKA Y    +G R N+KI V  TV                 +E     F +T  +           +    S+ ++  D Y+VLGR   +++
Sbjct:   26 VGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIA 142
[Close]
BLAST of EMLSAG00000000871 vs. C. finmarchicus
Match: gi|592785590|gb|GAXK01168978.1| (TSA: Calanus finmarchicus comp151_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 54.299 bits (129), Expect = 2.709e-9
Identity = 44/139 (31.65%), Postives = 60/139 (43.17%), Query Frame = 0 
Query:    1 MSEYCDRLNCAAKMLQSITVQTLVFSKAWYN-DVYGFRCNKKITVQSTVF-----ETLALVFR-----------------------NXXXXXXXXXXXXVFMYDLYIVLGRASMNVSYLCAK------PHELIQNDTTK 104
            + E  DRL  A K+L+S+T QT VFSKA Y    +G R N+KI+V  TV      E L   F+                       +    +    S+ ++  D Y+VLGR  MNV +   K      PH L + D  K
Sbjct:  104 VGESGDRLTRAGKVLESLTGQTPVFSKARYTVRSFGIRRNEKISVHCTVRGAKAEEILERGFKVKEYELRKENFSANGNFGYGIQEHIDLGIKYDPSIGIYGMDFYVVLGRPGMNVQHRRRKVGHVGFPHRLTKEDAMK 520
[Close]
BLAST of EMLSAG00000000871 vs. C. finmarchicus
Match: gi|592800192|gb|GAXK01154376.1| (TSA: Calanus finmarchicus comp2406159_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.4318 bits (93), Expect = 2.231e-4
Identity = 21/49 (42.86%), Postives = 31/49 (63.27%), Query Frame = 0 
Query:    1 MSEYCDRLNCAAKMLQSITVQTLVFSKAWYN-DVYGFRCNKKITVQSTV 48
            + E  DRL  AAK+L+ I+ QT VFSKA      +G R N++I+ + T+
Sbjct:  347 VGESGDRLTKAAKVLEQISGQTPVFSKAKVTIRQFGIRRNERISARVTI 493
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BLAST of EMLSAG00000000871 vs. C. finmarchicus
Match: gi|592823506|gb|GAXK01131062.1| (TSA: Calanus finmarchicus comp3506014_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.0466 bits (92), Expect = 2.395e-4
Identity = 25/55 (45.45%), Postives = 31/55 (56.36%), Query Frame = 0 
Query:    1 MSEYCDRLNCAAKMLQSITVQTLVFSKAWYN-DVYGFRCNKKITVQSTVFETLAL 54
            + E  DRL  AAK+L+ +T Q  VFSKA Y    +G R N+KI    TV    AL
Sbjct:  224 VGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAL 388
[Close]
BLAST of EMLSAG00000000871 vs. C. finmarchicus
Match: gi|592855060|gb|GAXK01102484.1| (TSA: Calanus finmarchicus comp4302743_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 6.780e-3
Identity = 21/49 (42.86%), Postives = 28/49 (57.14%), Query Frame = 0 
Query:    1 MSEYCDRLNCAAKMLQSITVQTLVFSKAWYN-DVYGFRCNKKITVQSTV 48
            + E  DRL  AAK+L+ +T Q  VFS A      +G R N+KI+   TV
Sbjct:  101 VGESGDRLTRAAKVLEELTEQKPVFSVARLTVRTFGIRRNEKISCHVTV 247
[Close]
BLAST of EMLSAG00000000871 vs. C. finmarchicus
Match: gi|592773424|gb|GAXK01181144.1| (TSA: Calanus finmarchicus comp8848116_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.039 bits (79), Expect = 8.111e-3
Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:    5 CDRLNCAAKMLQSITVQTLVFSKAWYN-DVYGFRCNKKITVQSTV 48
             DRL  AAK+LQ ++ Q  VFS+A      +G R N+KI    TV
Sbjct:    4 TDRLTRAAKVLQELSDQEPVFSRARLTVRTFGIRRNEKIACHVTV 138
[Close]
BLAST of EMLSAG00000000871 vs. C. finmarchicus
Match: gi|592756472|gb|GAXK01197941.1| (TSA: Calanus finmarchicus comp7112570_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 7.761e-2
Identity = 18/45 (40.00%), Postives = 25/45 (55.56%), Query Frame = 0 
Query:    5 CDRLNCAAKMLQSITVQTLVFSKAWYN-DVYGFRCNKKITVQSTV 48
             DRL  A ++L+ I  QT V SKA Y    +G R N++I    T+
Sbjct:  169 GDRLTKAIRVLEQIGQQTPVTSKARYTLRSFGIRRNEEIAAHVTI 303
[Close]
BLAST of EMLSAG00000000871 vs. L. salmonis peptides
Match: EMLSAP00000000871 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1150:60791:61185:1 gene:EMLSAG00000000871 transcript:EMLSAT00000000871 description:"maker-LSalAtl2s1150-snap-gene-0.3")

HSP 1 Score: 214.542 bits (545), Expect = 5.720e-73
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 
Query:    1 MSEYCDRLNCAAKMLQSITVQTLVFSKAWYNDVYGFRCNKKITVQSTVFETLALVFRNTLTWLSRTXSLSVFMYDLYIVLGRASMNVSYLCAKPHELIQNDTTK 104
            MSEYCDRLNCAAKMLQSITVQTLVFSKAWYNDVYGFRCNKKITVQSTVFETLALVFRNTLTWLSRTXSLSVFMYDLYIVLGRASMNVSYLCAKPHELIQNDTTK
Sbjct:    1 MSEYCDRLNCAAKMLQSITVQTLVFSKAWYNDVYGFRCNKKITVQSTVFETLALVFRNTLTWLSRTXSLSVFMYDLYIVLGRASMNVSYLCAKPHELIQNDTTK 104
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000871 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 19
Match NameE-valueIdentityDescription
-1.413e-629.91symbol:RPL11 "60S ribosomal protein L11" species:9... [more]
-1.442e-629.91symbol:rpl11 "ribosomal protein L11" species:7955 ... [more]
-1.495e-629.91symbol:TCEB3 "Uncharacterized protein" species:903... [more]
-1.681e-629.91symbol:Rpl11 "60S ribosomal protein L11" species:1... [more]
-1.681e-629.91symbol:Rpl11 "ribosomal protein L11" species:10116... [more]
-1.681e-629.91symbol:Rpl11 "ribosomal protein L11" species:10090... [more]
-1.681e-629.91symbol:RPL11 "60S ribosomal protein L11" species:3... [more]
-1.681e-629.91symbol:RPL11 "60S ribosomal protein L11" species:9... [more]
-1.681e-629.91symbol:RPL11 "60S ribosomal protein L11" species:9... [more]
-1.681e-629.91symbol:RPL11 "Uncharacterized protein" species:961... [more]

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BLAST of EMLSAG00000000871 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592785590|gb|GAXK01168978.1|2.709e-931.65TSA: Calanus finmarchicus comp151_c0_seq1 transcri... [more]
gi|592800192|gb|GAXK01154376.1|2.231e-442.86TSA: Calanus finmarchicus comp2406159_c0_seq1 tran... [more]
gi|592823506|gb|GAXK01131062.1|2.395e-445.45TSA: Calanus finmarchicus comp3506014_c0_seq1 tran... [more]
gi|592855060|gb|GAXK01102484.1|6.780e-342.86TSA: Calanus finmarchicus comp4302743_c0_seq1 tran... [more]
gi|592773424|gb|GAXK01181144.1|8.111e-344.44TSA: Calanus finmarchicus comp8848116_c0_seq1 tran... [more]
gi|592756472|gb|GAXK01197941.1|7.761e-240.00TSA: Calanus finmarchicus comp7112570_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000871 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000008715.720e-73100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1150:6079... [more]
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BLAST of EMLSAG00000000871 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000871 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000871 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000871 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1150supercontigLSalAtl2s1150:60791..61185 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1150-snap-gene-0.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000871 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000871EMLSAT00000000871-696718Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1150:60791..61185+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000871-683637 ID=EMLSAG00000000871-683637|Name=EMLSAG00000000871|organism=Lepeophtheirus salmonis|type=gene|length=395bp|location=Sequence derived from alignment at LSalAtl2s1150:60791..61185+ (Lepeophtheirus salmonis)
ATGAGTGAGTATTGCGATAGGCTCAACTGTGCTGCCAAAATGTTGCAGTC
CATCACTGTACAAACGCTTGTATTCTCTAAAGCTTGGTACAATGATGTTT
ATGGGTTCAGATGTAACAAAAAGATCACTGTTCAAAGCACTGTGTGAGGA
AGAAAGCCAGTAGATCCTTAGAAAAGGACTCAAGGTGTGGGAATACGGGT
TGAAGCGGGATTACTTTTCTAAGGTTTGAAACTTTGGCTTTAGTTTTCCG
GAACACATTGACTTGGTTATCAAGGACGMCCTCTCTATCCGTGTTTATGT
ATGACCTCTATATTGTTCTCGGAAGAGCCAGTATGAATGTAAGTTACCTT
TGTGCCAAGCCCCACGAGTTGATCCAGAATGATACCACGAAATAG
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