EMLSAG00000000910, EMLSAG00000000910-683676 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000910 vs. C. finmarchicus
Match: gi|592864070|gb|GAXK01093492.1| (TSA: Calanus finmarchicus comp4299700_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 3.883e-1 Identity = 13/41 (31.71%), Postives = 24/41 (58.54%), Query Frame = 0 Query: 40 MWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFL 80 MW+V ++ + +RT + +EAW R QA + P++ F+ Sbjct: 52 MWSVYGKVLENRTRTTDKLEAWHRRLQAIILRPHPDMDTFV 174
BLAST of EMLSAG00000000910 vs. C. finmarchicus
Match: gi|592772147|gb|GAXK01182421.1| (TSA: Calanus finmarchicus comp5115319_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 4.659e-1 Identity = 13/41 (31.71%), Postives = 21/41 (51.22%), Query Frame = 0 Query: 40 MWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFL 80 MW+V ++ +RT + +EAW R Q + P+ FL Sbjct: 85 MWSVYSKVLEERTRTTDKLEAWHRRLQEIIVRPHPDFDTFL 207
BLAST of EMLSAG00000000910 vs. C. finmarchicus
Match: gi|592902521|gb|GAXK01055854.1| (TSA: Calanus finmarchicus comp1968864_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 5.472e-1 Identity = 16/42 (38.10%), Postives = 21/42 (50.00%), Query Frame = 0 Query: 41 WNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFLLM 82 WN+ D + TNN E R F+ N G H P +W F L+ Sbjct: 1331 WNLYDLNLLLVPTTNNGNEGQNRRFKENFGIH-PKIWEFFLI 1453
BLAST of EMLSAG00000000910 vs. C. finmarchicus
Match: gi|592952788|gb|GAXK01005765.1| (TSA: Calanus finmarchicus comp2809718_c0_seq1 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 3.038e+0 Identity = 13/41 (31.71%), Postives = 21/41 (51.22%), Query Frame = 0 Query: 40 MWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFL 80 MW+V ++ +RT + +EAW R Q + P+ FL Sbjct: 464 MWSVYSKVLEGRTRTTDKLEAWHRRLQEIIIRPHPDFDTFL 586
BLAST of EMLSAG00000000910 vs. C. finmarchicus
Match: gi|592763054|gb|GAXK01191447.1| (TSA: Calanus finmarchicus comp40781_c0_seq1 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 3.290e+0 Identity = 14/44 (31.82%), Postives = 22/44 (50.00%), Query Frame = 0 Query: 47 IENHISRTNNPVEAWQRHFQANVGSHLPNLWAFLLMYFS-RNRD 89 NH SR ++PV HF + + +H+ N + + S NRD Sbjct: 110 CRNHSSRASSPVGVLMGHFHSFIHTHMQNCTQIIFKFVSLSNRD 241
BLAST of EMLSAG00000000910 vs. L. salmonis peptides
Match: EMLSAP00000000910 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1159:83746:84094:1 gene:EMLSAG00000000910 transcript:EMLSAT00000000910 description:"maker-LSalAtl2s1159-snap-gene-0.11") HSP 1 Score: 192.586 bits (488), Expect = 1.227e-64 Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 Query: 1 MLMVLAFIPPEVVIEAFEILYNPPLTSWSTSSLFSNIDVMWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFLLMYFSRNRDQQLLP 94 MLMVLAFIPPEVVIEAFEILYNPPLTSWSTSSLFSNIDVMWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFLLMYFSRNRDQQLLP Sbjct: 1 MLMVLAFIPPEVVIEAFEILYNPPLTSWSTSSLFSNIDVMWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFLLMYFSRNRDQQLLP 94
BLAST of EMLSAG00000000910 vs. L. salmonis peptides
Match: EMLSAP00000005547 (pep:novel supercontig:LSalAtl2s:LSalAtl2s297:424290:425573:-1 gene:EMLSAG00000005547 transcript:EMLSAT00000005547 description:"augustus_masked-LSalAtl2s297-processed-gene-4.3") HSP 1 Score: 67.3958 bits (163), Expect = 4.815e-15 Identity = 35/98 (35.71%), Postives = 50/98 (51.02%), Query Frame = 0 Query: 1 MLMVLAFIPPEVVIEAFEIL------YNPPLTSWSTSSLFSNIDV------------MWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFL 80 ML +AF+P + IE FE L P+ + + + + +WNV+DRI + +SR +N VE W RHFQ N+GS PNLW F+ Sbjct: 128 MLSAIAFVPVDQTIEVFEALSETMPDIGQPIIDYFEDTYIGRLQLQERRQEPSFLHTIWNVRDRIIDGLSRNDNSVEGWYRHFQVNIGSQHPNLWEFI 225
BLAST of EMLSAG00000000910 vs. nr
Match: gi|919015923|ref|XP_013392304.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC106160301 [Lingula anatina]) HSP 1 Score: 61.2326 bits (147), Expect = 3.265e-9 Identity = 33/90 (36.67%), Postives = 47/90 (52.22%), Query Frame = 0 Query: 4 VLAFIPPEVVIEAFEILYNPPLTSWSTSSLFSNIDVMWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFLLMYFSRNRDQQLL 93 LAF+PPE V+ AFE + D + ++ RIE + RTNN +E W R +ANVG++ PN W FL + R+Q L+ Sbjct: 88 ALAFVPPEDVVAAFETMQE------------EIDDSLPSLTTRIEEGLPRTNNAIEGWHRRLEANVGAYHPNFWKFLDIL---KREQGLM 162
BLAST of EMLSAG00000000910 vs. nr
Match: gi|1061464054|gb|ODM87143.1| (hypothetical protein Ocin01_19540 [Orchesella cincta]) HSP 1 Score: 58.151 bits (139), Expect = 2.031e-8 Identity = 37/113 (32.74%), Postives = 51/113 (45.13%), Query Frame = 0 Query: 1 MLMVLAFIPPEVVIEAFEILYNPPLTSWSTS--SLFSNID-------------------VMWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFLLMYFSRNRDQQL 92 +L LAFIPP V +AFEIL S S SL ++ V WN R+ ++RTNN E WQR FQ+ +G+ P +W F+ + + QL Sbjct: 34 ILTSLAFIPPPSVKDAFEILIADGFYSGSRDMESLVDHVKDNWIGGNRRGKTRPPRFDIVEWNCFHRVAEDLARTNNAFEGWQRGFQSQLGAVHPTIWKFIETFMKQPTQPQL 146
BLAST of EMLSAG00000000910 vs. nr
Match: gi|749721221|gb|KII68549.1| (hypothetical protein RF11_02835 [Thelohanellus kitauei]) HSP 1 Score: 55.0694 bits (131), Expect = 1.335e-7 Identity = 31/92 (33.70%), Postives = 47/92 (51.09%), Query Frame = 0 Query: 1 MLMVLAFIPPEVVIEAFEILYNPPLTSWSTSSLFSN-----------IDV-MWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFL 80 ML LAF+ + V E FE+L + ++ +F + D+ MWN ++R+ + RTNN +E W R F V SH PN++ FL Sbjct: 1 MLGPLAFVETQRVFEYFEVLEDELERQVTSRKIFIDRFHRRIRSAPVYDINMWNQKNRVAQSLQRTNNAIEGWHRAFSNMVDSHHPNIYKFL 92
BLAST of EMLSAG00000000910 vs. nr
Match: gi|1061465273|gb|ODM87485.1| (FLYWCH-type zinc finger-containing protein 1 [Orchesella cincta]) HSP 1 Score: 55.8398 bits (133), Expect = 4.069e-7 Identity = 32/101 (31.68%), Postives = 46/101 (45.54%), Query Frame = 0 Query: 1 MLMVLAFIPPEVVIEAFEILYNPPLTSWSTS--SLFSNIDVMW-------------------NVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFL 80 L LAF+PP V EA E+L S ST SL ++ W N R+ +++RTNN +E W R FQ +G+ P++W F+ Sbjct: 301 CLTALAFVPPHGVKEALEVLITDNFYSSSTDIESLVDYVEDTWVGTNRRGKERQPRFAIEEWNCFHRVAENLARTNNAIEGWHRGFQTTLGASHPSIWKFI 401
BLAST of EMLSAG00000000910 vs. nr
Match: gi|749726392|gb|KII72232.1| (hypothetical protein RF11_08654 [Thelohanellus kitauei]) HSP 1 Score: 54.6842 bits (130), Expect = 7.410e-7 Identity = 34/102 (33.33%), Postives = 45/102 (44.12%), Query Frame = 0 Query: 2 LMVLAFIPPEVVIEAFEILYNPPL----------------TSWSTSSLFSNIDV-------MWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFL 80 LM LAF+PP VI FE L P +W + +NI MWN+ + + +RTNN VE W F ++GS PN+W FL Sbjct: 58 LMALAFLPPSDVIVGFETLVTSPFFADNIEELQYITDYFEDNWIGRNGHNNIRRNARFPIHMWNLMQTVMDGQARTNNAVEGWHNSFSKSLGSSHPNIWVFL 159
BLAST of EMLSAG00000000910 vs. nr
Match: gi|749717408|gb|KII65673.1| (hypothetical protein RF11_16082 [Thelohanellus kitauei]) HSP 1 Score: 54.299 bits (129), Expect = 8.819e-7 Identity = 34/102 (33.33%), Postives = 45/102 (44.12%), Query Frame = 0 Query: 2 LMVLAFIPPEVVIEAFEILYNPPL----------------TSWSTSSLFSNIDV-------MWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFL 80 LM LAF+PP VI FE L P +W + +NI MWN+ + + +RTNN VE W F ++GS PN+W FL Sbjct: 58 LMALAFLPPSDVIVGFETLVTSPFFADNIEELQYITDYFEDNWIGRNGHNNIRRNARFPIHMWNLMQTVVDGQARTNNAVEGWHNSFSKSLGSSHPNIWVFL 159 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000910 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000910 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 5
BLAST of EMLSAG00000000910 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000000910 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000910 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000910 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 6
BLAST of EMLSAG00000000910 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1159:83746..84094+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000910-683676 ID=EMLSAG00000000910-683676|Name=EMLSAG00000000910|organism=Lepeophtheirus salmonis|type=gene|length=349bp|location=Sequence derived from alignment at LSalAtl2s1159:83746..84094+ (Lepeophtheirus salmonis)back to top Add to Basket
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