EMLSAG00000000910, EMLSAG00000000910-683676 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000910
Unique NameEMLSAG00000000910-683676
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000910 vs. C. finmarchicus
Match: gi|592864070|gb|GAXK01093492.1| (TSA: Calanus finmarchicus comp4299700_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 3.883e-1
Identity = 13/41 (31.71%), Postives = 24/41 (58.54%), Query Frame = 0
Query:   40 MWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFL 80
            MW+V  ++  + +RT + +EAW R  QA +    P++  F+
Sbjct:   52 MWSVYGKVLENRTRTTDKLEAWHRRLQAIILRPHPDMDTFV 174          
BLAST of EMLSAG00000000910 vs. C. finmarchicus
Match: gi|592772147|gb|GAXK01182421.1| (TSA: Calanus finmarchicus comp5115319_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 4.659e-1
Identity = 13/41 (31.71%), Postives = 21/41 (51.22%), Query Frame = 0
Query:   40 MWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFL 80
            MW+V  ++    +RT + +EAW R  Q  +    P+   FL
Sbjct:   85 MWSVYSKVLEERTRTTDKLEAWHRRLQEIIVRPHPDFDTFL 207          
BLAST of EMLSAG00000000910 vs. C. finmarchicus
Match: gi|592902521|gb|GAXK01055854.1| (TSA: Calanus finmarchicus comp1968864_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 5.472e-1
Identity = 16/42 (38.10%), Postives = 21/42 (50.00%), Query Frame = 0
Query:   41 WNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFLLM 82
            WN+ D     +  TNN  E   R F+ N G H P +W F L+
Sbjct: 1331 WNLYDLNLLLVPTTNNGNEGQNRRFKENFGIH-PKIWEFFLI 1453          
BLAST of EMLSAG00000000910 vs. C. finmarchicus
Match: gi|592952788|gb|GAXK01005765.1| (TSA: Calanus finmarchicus comp2809718_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.038e+0
Identity = 13/41 (31.71%), Postives = 21/41 (51.22%), Query Frame = 0
Query:   40 MWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFL 80
            MW+V  ++    +RT + +EAW R  Q  +    P+   FL
Sbjct:  464 MWSVYSKVLEGRTRTTDKLEAWHRRLQEIIIRPHPDFDTFL 586          
BLAST of EMLSAG00000000910 vs. C. finmarchicus
Match: gi|592763054|gb|GAXK01191447.1| (TSA: Calanus finmarchicus comp40781_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.290e+0
Identity = 14/44 (31.82%), Postives = 22/44 (50.00%), Query Frame = 0
Query:   47 IENHISRTNNPVEAWQRHFQANVGSHLPNLWAFLLMYFS-RNRD 89
              NH SR ++PV     HF + + +H+ N    +  + S  NRD
Sbjct:  110 CRNHSSRASSPVGVLMGHFHSFIHTHMQNCTQIIFKFVSLSNRD 241          
BLAST of EMLSAG00000000910 vs. L. salmonis peptides
Match: EMLSAP00000000910 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1159:83746:84094:1 gene:EMLSAG00000000910 transcript:EMLSAT00000000910 description:"maker-LSalAtl2s1159-snap-gene-0.11")

HSP 1 Score: 192.586 bits (488), Expect = 1.227e-64
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query:    1 MLMVLAFIPPEVVIEAFEILYNPPLTSWSTSSLFSNIDVMWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFLLMYFSRNRDQQLLP 94
            MLMVLAFIPPEVVIEAFEILYNPPLTSWSTSSLFSNIDVMWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFLLMYFSRNRDQQLLP
Sbjct:    1 MLMVLAFIPPEVVIEAFEILYNPPLTSWSTSSLFSNIDVMWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFLLMYFSRNRDQQLLP 94          
BLAST of EMLSAG00000000910 vs. L. salmonis peptides
Match: EMLSAP00000005547 (pep:novel supercontig:LSalAtl2s:LSalAtl2s297:424290:425573:-1 gene:EMLSAG00000005547 transcript:EMLSAT00000005547 description:"augustus_masked-LSalAtl2s297-processed-gene-4.3")

HSP 1 Score: 67.3958 bits (163), Expect = 4.815e-15
Identity = 35/98 (35.71%), Postives = 50/98 (51.02%), Query Frame = 0
Query:    1 MLMVLAFIPPEVVIEAFEIL------YNPPLTSWSTSSLFSNIDV------------MWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFL 80
            ML  +AF+P +  IE FE L         P+  +   +    + +            +WNV+DRI + +SR +N VE W RHFQ N+GS  PNLW F+
Sbjct:  128 MLSAIAFVPVDQTIEVFEALSETMPDIGQPIIDYFEDTYIGRLQLQERRQEPSFLHTIWNVRDRIIDGLSRNDNSVEGWYRHFQVNIGSQHPNLWEFI 225          
BLAST of EMLSAG00000000910 vs. nr
Match: gi|919015923|ref|XP_013392304.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC106160301 [Lingula anatina])

HSP 1 Score: 61.2326 bits (147), Expect = 3.265e-9
Identity = 33/90 (36.67%), Postives = 47/90 (52.22%), Query Frame = 0
Query:    4 VLAFIPPEVVIEAFEILYNPPLTSWSTSSLFSNIDVMWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFLLMYFSRNRDQQLL 93
             LAF+PPE V+ AFE +                 D + ++  RIE  + RTNN +E W R  +ANVG++ PN W FL +     R+Q L+
Sbjct:   88 ALAFVPPEDVVAAFETMQE------------EIDDSLPSLTTRIEEGLPRTNNAIEGWHRRLEANVGAYHPNFWKFLDIL---KREQGLM 162          
BLAST of EMLSAG00000000910 vs. nr
Match: gi|1061464054|gb|ODM87143.1| (hypothetical protein Ocin01_19540 [Orchesella cincta])

HSP 1 Score: 58.151 bits (139), Expect = 2.031e-8
Identity = 37/113 (32.74%), Postives = 51/113 (45.13%), Query Frame = 0
Query:    1 MLMVLAFIPPEVVIEAFEILYNPPLTSWSTS--SLFSNID-------------------VMWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFLLMYFSRNRDQQL 92
            +L  LAFIPP  V +AFEIL      S S    SL  ++                    V WN   R+   ++RTNN  E WQR FQ+ +G+  P +W F+  +  +    QL
Sbjct:   34 ILTSLAFIPPPSVKDAFEILIADGFYSGSRDMESLVDHVKDNWIGGNRRGKTRPPRFDIVEWNCFHRVAEDLARTNNAFEGWQRGFQSQLGAVHPTIWKFIETFMKQPTQPQL 146          
BLAST of EMLSAG00000000910 vs. nr
Match: gi|749721221|gb|KII68549.1| (hypothetical protein RF11_02835 [Thelohanellus kitauei])

HSP 1 Score: 55.0694 bits (131), Expect = 1.335e-7
Identity = 31/92 (33.70%), Postives = 47/92 (51.09%), Query Frame = 0
Query:    1 MLMVLAFIPPEVVIEAFEILYNPPLTSWSTSSLFSN-----------IDV-MWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFL 80
            ML  LAF+  + V E FE+L +      ++  +F +            D+ MWN ++R+   + RTNN +E W R F   V SH PN++ FL
Sbjct:    1 MLGPLAFVETQRVFEYFEVLEDELERQVTSRKIFIDRFHRRIRSAPVYDINMWNQKNRVAQSLQRTNNAIEGWHRAFSNMVDSHHPNIYKFL 92          
BLAST of EMLSAG00000000910 vs. nr
Match: gi|1061465273|gb|ODM87485.1| (FLYWCH-type zinc finger-containing protein 1 [Orchesella cincta])

HSP 1 Score: 55.8398 bits (133), Expect = 4.069e-7
Identity = 32/101 (31.68%), Postives = 46/101 (45.54%), Query Frame = 0
Query:    1 MLMVLAFIPPEVVIEAFEILYNPPLTSWSTS--SLFSNIDVMW-------------------NVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFL 80
             L  LAF+PP  V EA E+L      S ST   SL   ++  W                   N   R+  +++RTNN +E W R FQ  +G+  P++W F+
Sbjct:  301 CLTALAFVPPHGVKEALEVLITDNFYSSSTDIESLVDYVEDTWVGTNRRGKERQPRFAIEEWNCFHRVAENLARTNNAIEGWHRGFQTTLGASHPSIWKFI 401          
BLAST of EMLSAG00000000910 vs. nr
Match: gi|749726392|gb|KII72232.1| (hypothetical protein RF11_08654 [Thelohanellus kitauei])

HSP 1 Score: 54.6842 bits (130), Expect = 7.410e-7
Identity = 34/102 (33.33%), Postives = 45/102 (44.12%), Query Frame = 0
Query:    2 LMVLAFIPPEVVIEAFEILYNPPL----------------TSWSTSSLFSNIDV-------MWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFL 80
            LM LAF+PP  VI  FE L   P                  +W   +  +NI         MWN+   + +  +RTNN VE W   F  ++GS  PN+W FL
Sbjct:   58 LMALAFLPPSDVIVGFETLVTSPFFADNIEELQYITDYFEDNWIGRNGHNNIRRNARFPIHMWNLMQTVMDGQARTNNAVEGWHNSFSKSLGSSHPNIWVFL 159          
BLAST of EMLSAG00000000910 vs. nr
Match: gi|749717408|gb|KII65673.1| (hypothetical protein RF11_16082 [Thelohanellus kitauei])

HSP 1 Score: 54.299 bits (129), Expect = 8.819e-7
Identity = 34/102 (33.33%), Postives = 45/102 (44.12%), Query Frame = 0
Query:    2 LMVLAFIPPEVVIEAFEILYNPPL----------------TSWSTSSLFSNIDV-------MWNVQDRIENHISRTNNPVEAWQRHFQANVGSHLPNLWAFL 80
            LM LAF+PP  VI  FE L   P                  +W   +  +NI         MWN+   + +  +RTNN VE W   F  ++GS  PN+W FL
Sbjct:   58 LMALAFLPPSDVIVGFETLVTSPFFADNIEELQYITDYFEDNWIGRNGHNNIRRNARFPIHMWNLMQTVVDGQARTNNAVEGWHNSFSKSLGSSHPNIWVFL 159          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000910 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000910 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592864070|gb|GAXK01093492.1|3.883e-131.71TSA: Calanus finmarchicus comp4299700_c0_seq1 tran... [more]
gi|592772147|gb|GAXK01182421.1|4.659e-131.71TSA: Calanus finmarchicus comp5115319_c0_seq1 tran... [more]
gi|592902521|gb|GAXK01055854.1|5.472e-138.10TSA: Calanus finmarchicus comp1968864_c0_seq1 tran... [more]
gi|592952788|gb|GAXK01005765.1|3.038e+031.71TSA: Calanus finmarchicus comp2809718_c0_seq1 tran... [more]
gi|592763054|gb|GAXK01191447.1|3.290e+031.82TSA: Calanus finmarchicus comp40781_c0_seq1 transc... [more]
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BLAST of EMLSAG00000000910 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000009101.227e-64100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1159:8374... [more]
EMLSAP000000055474.815e-1535.71pep:novel supercontig:LSalAtl2s:LSalAtl2s297:42429... [more]
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BLAST of EMLSAG00000000910 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000910 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000910 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 6
Match NameE-valueIdentityDescription
gi|919015923|ref|XP_013392304.1|3.265e-936.67PREDICTED: LOW QUALITY PROTEIN: uncharacterized pr... [more]
gi|1061464054|gb|ODM87143.1|2.031e-832.74hypothetical protein Ocin01_19540 [Orchesella cinc... [more]
gi|749721221|gb|KII68549.1|1.335e-733.70hypothetical protein RF11_02835 [Thelohanellus kit... [more]
gi|1061465273|gb|ODM87485.1|4.069e-731.68FLYWCH-type zinc finger-containing protein 1 [Orch... [more]
gi|749726392|gb|KII72232.1|7.410e-733.33hypothetical protein RF11_08654 [Thelohanellus kit... [more]
gi|749717408|gb|KII65673.1|8.819e-733.33hypothetical protein RF11_16082 [Thelohanellus kit... [more]
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BLAST of EMLSAG00000000910 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1159supercontigLSalAtl2s1159:83746..84094 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1159-snap-gene-0.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000910 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000910EMLSAT00000000910-696757Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1159:83746..84094+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000910-683676 ID=EMLSAG00000000910-683676|Name=EMLSAG00000000910|organism=Lepeophtheirus salmonis|type=gene|length=349bp|location=Sequence derived from alignment at LSalAtl2s1159:83746..84094+ (Lepeophtheirus salmonis)
ATGCTAATGGTTTTGGCTTTCATTCCACCAGAAGTAGTAATTGAGGCATT CGAGATTCTTTACAATGTTATACCCAAAANNNNNNNNNNNNNNNNNNNNN NNNNNNNNACCTTGGAGATAAATACATTAGCCGCCTTTAACTTCATGGTC GACGTCATCCCTCTTTTCCAATATTGATGTGATGTGGAACGTACAAGATA GAATTGAAAATCATATTTCTCGTACAAATAACCCCGTTGAAGCATGGCAG AGGCACTTTCAAGCGAATGTAGGGTCTCACCTTCCAAATCTATGGGCTTT CCTTTTAATGTACTTCAGTAGGAATAGGGATCAACAATTGTTACCATGA
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