EMLSAG00000001716, EMLSAG00000001716-684482 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001716 vs. GO
Match: - (symbol:AT2G06500 species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0008150 "biological_process" evidence=ND] InterPro:IPR008906 Pfam:PF05699 EMBL:CP002685 InterPro:IPR025398 Pfam:PF14291 EMBL:AC006420 HOGENOM:HOG000239492 ProtClustDB:CLSN2679877 PIR:A84478 RefSeq:NP_178689.1 UniGene:At.52658 EnsemblPlants:AT2G06500.1 GeneID:815208 KEGG:ath:AT2G06500 TAIR:At2g06500 eggNOG:NOG75238 InParanoid:Q9SKI5 OMA:WISFRIL Genevestigator:Q9SKI5 Uniprot:Q9SKI5) HSP 1 Score: 44.2838 bits (103), Expect = 7.744e-5 Identity = 23/72 (31.94%), Postives = 41/72 (56.94%), Query Frame = 0 Query: 43 TTGHSDWNNVTAHLAEYERSKSHKKAMVAYV---TRCADAGCIDTEVKKQFDSECEYWSEVIKRVVAVVKFL 111 T+ ++DW N++ L E+E S H M + +R + ID V+++ + E +W EV+ R++A+VK L Sbjct: 82 TSVYNDWRNLSKRLEEHEGSHDHIICMTRWTELESRLQNKTTIDKYVQQEINKEKIHWREVLVRIIALVKTL 153
BLAST of EMLSAG00000001716 vs. GO
Match: - (symbol:AT4G10200 species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0008150 "biological_process" evidence=ND] InterPro:IPR008906 InterPro:IPR012337 Pfam:PF05699 EMBL:CP002687 GO:GO:0003676 SUPFAM:SSF53098 EMBL:AL049487 EMBL:AL161516 InterPro:IPR025398 Pfam:PF14291 InterPro:IPR006580 SMART:SM00597 HOGENOM:HOG000239492 PIR:T04070 RefSeq:NP_192758.1 UniGene:At.54251 EnsemblPlants:AT4G10200.1 GeneID:826611 KEGG:ath:AT4G10200 TAIR:At4g10200 InParanoid:Q9SN25 OMA:MAIDANT Genevestigator:Q9SN25 Uniprot:Q9SN25) HSP 1 Score: 41.5874 bits (96), Expect = 5.975e-4 Identity = 25/84 (29.76%), Postives = 43/84 (51.19%), Query Frame = 0 Query: 31 LFTRKLINSEIFTTGHSDWNNVTAHLAEYERSKSHKKAMVAYV---TRCADAGCIDTEVKKQFDSECEYWSEVIKRVVAVVKFL 111 LF R ++ +TG +DW N+ L+++E S H M ++ R ID ++K + E +W EV+ R+ ++VK L Sbjct: 140 LFGRDQDAMQLSSTGFNDWRNIRIRLSQHETSHRHIVCMSKWMELELRLRKHLTIDKCLQKDINIEKNHWREVLLRIFSLVKNL 223
BLAST of EMLSAG00000001716 vs. L. salmonis peptides
Match: EMLSAP00000001716 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1297:29284:29876:-1 gene:EMLSAG00000001716 transcript:EMLSAT00000001716 description:"snap_masked-LSalAtl2s1297-processed-gene-0.3") HSP 1 Score: 239.58 bits (610), Expect = 1.861e-82 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 Query: 1 MGPEICRNKNADVGAPERQHQHQKRYFSKTLFTRKLINSEIFTTGHSDWNNVTAHLAEYERSKSHKKAMVAYVTRCADAGCIDTEVKKQFDSECEYWSEVIKRVVAVVKFLVE 113 MGPEICRNKNADVGAPERQHQHQKRYFSKTLFTRKLINSEIFTTGHSDWNNVTAHLAEYERSKSHKKAMVAYVTRCADAGCIDTEVKKQFDSECEYWSEVIKRVVAVVKFLVE Sbjct: 1 MGPEICRNKNADVGAPERQHQHQKRYFSKTLFTRKLINSEIFTTGHSDWNNVTAHLAEYERSKSHKKAMVAYVTRCADAGCIDTEVKKQFDSECEYWSEVIKRVVAVVKFLVE 113
BLAST of EMLSAG00000001716 vs. L. salmonis peptides
Match: EMLSAP00000000697 (pep:novel supercontig:LSalAtl2s:LSalAtl2s110:443333:446119:1 gene:EMLSAG00000000697 transcript:EMLSAT00000000697 description:"maker-LSalAtl2s110-snap-gene-4.25") HSP 1 Score: 70.4774 bits (171), Expect = 1.269e-16 Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 0 Query: 63 KSHKKAMVAYVTRCADAGCIDTEVKKQFDSECEYWSE 99 KSH+KAM+AYVTR ADAGCIDTEVKKQFDSE EYW+E Sbjct: 2 KSHQKAMLAYVTRSADAGCIDTEVKKQFDSESEYWAE 38
BLAST of EMLSAG00000001716 vs. Select Arthropod Genomes
Match: gb|EFA11766.1| (hypothetical protein TcasGA2_TC005197 [Tribolium castaneum]) HSP 1 Score: 68.5514 bits (166), Expect = 4.225e-14 Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 0 Query: 31 LFTRKLINSEIFTTGHSDWNNVTAHLAEYERSKSHKKAMVAYVTRCADAGCIDTEVKKQFDSECEYWSEVIKRVVAVVKFL 111 LF+R + +F TG +DW N + E+E+S+ H + ++ R G IDT + KQF SE EYW +++KRVVA VKFL Sbjct: 5 LFSRT-SSPSLFVTGFNDWKNAHIRINEHEKSQEHCQYTKMFIDRSNVLGKIDTGLHKQFLSEKEYWVQILKRVVAAVKFL 84
BLAST of EMLSAG00000001716 vs. nr
Match: gi|1101573084|ref|XP_018952202.1| (PREDICTED: zinc finger MYM-type protein 1-like [Cyprinus carpio]) HSP 1 Score: 120.939 bits (302), Expect = 3.304e-30 Identity = 63/143 (44.06%), Postives = 85/143 (59.44%), Query Frame = 0 Query: 2 GPEICRNKNADVGAPERQHQHQKRYFSKTLFTRKLINSE-------------------------------IFTTGHSDWNNVTAHLAEYERSKSHKKAMVAYVTRCADAGCIDTEVKKQFDSECEYWSEVIKRVVAVVKFLVE 113 GPE +NK+A+V A ER ++HQKR FSKT F RK +N E +F +G++DW + T +AE+E S SH+KAM Y+ R A G ID+++KKQF+S+C YWSEV++RVV VVKFL E Sbjct: 79 GPESVQNKDANVKASERHYKHQKRLFSKTHFKRKHLNGEYLPREWLLYSPSTSCVFCFACRLFGEGDGQSLFESGYNDWKHATRRIAEHENSDSHRKAMFNYINRAAADGVIDSQLKKQFESQCNYWSEVLQRVVPVVKFLSE 221
BLAST of EMLSAG00000001716 vs. nr
Match: gi|1041075712|ref|XP_017265669.1| (PREDICTED: zinc finger MYM-type protein 1-like [Kryptolebias marmoratus]) HSP 1 Score: 115.546 bits (288), Expect = 8.998e-28 Identity = 60/143 (41.96%), Postives = 81/143 (56.64%), Query Frame = 0 Query: 2 GPEICRNKNADVGAPERQHQHQKRYFSKTLFTRKLINSEI-------------------------------FTTGHSDWNNVTAHLAEYERSKSHKKAMVAYVTRCADAGCIDTEVKKQFDSECEYWSEVIKRVVAVVKFLVE 113 GP C+N N A ER ++HQKR FSK+ F RK+ N E F TG SDW + T + E+E S+ H+KAM+ +V+ A +G IDTE++KQF+SEC YW+EV++RVV+VVKFL E Sbjct: 133 GPGSCQNMNISFQASERVYKHQKRLFSKSYFKRKMANGEYIQRQWLLYSPSAGAAFCFACRIFSNANTQSSFETGFSDWKHATERMKEHENSEHHRKAMLTFVSLAAASGRIDTELQKQFESECAYWTEVLRRVVSVVKFLAE 275
BLAST of EMLSAG00000001716 vs. nr
Match: gi|1041118975|ref|XP_017283281.1| (PREDICTED: zinc finger MYM-type protein 1-like [Kryptolebias marmoratus]) HSP 1 Score: 115.546 bits (288), Expect = 9.514e-28 Identity = 60/143 (41.96%), Postives = 81/143 (56.64%), Query Frame = 0 Query: 2 GPEICRNKNADVGAPERQHQHQKRYFSKTLFTRKLINSEI-------------------------------FTTGHSDWNNVTAHLAEYERSKSHKKAMVAYVTRCADAGCIDTEVKKQFDSECEYWSEVIKRVVAVVKFLVE 113 GP C+N N A ER ++HQKR FSK+ F RK+ N E F TG SDW + T + E+E S+ H+KAM+ +V+ A +G IDTE++KQF+SEC YW+EV++RVV+VVKFL E Sbjct: 133 GPGSCQNMNVSFQASERVYKHQKRLFSKSYFKRKMANGEYIQRQWLLYSPSAGAAFCFACRIFSNANTQSSFETGFSDWKHATERMKEHENSEHHRKAMLTFVSLAAASGRIDTELQKQFESECAYWTEVLRRVVSVVKFLAE 275
BLAST of EMLSAG00000001716 vs. nr
Match: gi|1024979527|ref|XP_016311368.1| (PREDICTED: zinc finger MYM-type protein 1-like [Sinocyclocheilus anshuiensis]) HSP 1 Score: 107.457 bits (267), Expect = 1.584e-25 Identity = 60/143 (41.96%), Postives = 77/143 (53.85%), Query Frame = 0 Query: 2 GPEICRNKNADVGAPERQHQHQKRYFSKTLFTRKLINSE-------------------------------IFTTGHSDWNNVTAHLAEYERSKSHKKAMVAYVTRCADAGCIDTEVKKQFDSECEYWSEVIKRVVAVVKFLVE 113 GP C+NK A+V A E ++HQKR FSKT F RK +N E F +G++DW + T E E S H+KAM Y+ R A G ID+++KKQ +S C YWSEV++RVVAVVKFL E Sbjct: 43 GPVSCQNKEANVKASECHYKHQKRLFSKTHFKRKHLNGESLPREWLLYSPSTGCVFCFACRLFCEGDGQSPFESGYNDWKHATRRFGENENSDRHRKAMFNYINRAAADGFIDSQLKKQLESYCNYWSEVLRRVVAVVKFLSE 185
BLAST of EMLSAG00000001716 vs. nr
Match: gi|951057868|ref|XP_014522100.1| (PREDICTED: zinc finger MYM-type protein 1-like, partial [Vigna radiata var. radiata]) HSP 1 Score: 74.3294 bits (181), Expect = 3.051e-13 Identity = 42/139 (30.22%), Postives = 63/139 (45.32%), Query Frame = 0 Query: 5 ICRNKNADVGAPERQHQHQKRYFSKTLFTRKLINSE--------------------------------IFTTGHSDWNNVTAHLAEYERSKSHKKAMVAYVTRCADAGCIDTEVKKQFDSECEYWSEVIKRVVAVVKFL 111 + +N D A +R + Q RY SK++FTR L+N E +F TG++DW N T L ++E S+ HK + R G D+ + +Q + E YW +++RVVA VKFL Sbjct: 125 VSQNCGVDFSASKRLYPDQARYASKSMFTRTLLNGETQNRSWMVYSKSKGCVYCVPCMLFGSPANSDSVFVTGYNDWKNATQRLKDHENSRGHKTCLGNLKVRANTKGRADSHLLEQTEKEVSYWRALLRRVVAAVKFL 263
BLAST of EMLSAG00000001716 vs. nr
Match: gi|449690409|ref|XP_004212332.1| (PREDICTED: uncharacterized protein LOC101237710 [Hydra vulgaris]) HSP 1 Score: 72.7886 bits (177), Expect = 8.884e-13 Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 0 Query: 2 GPEICRNKNADVGAPERQHQHQKRYFSKTLFTR-KLINSEIFT---TGHSDWNNVTAHLAEYERSKSHKKAMVAYVTRCADAGCIDTEVKKQFDSECEYWSEVIKRVVAVVKFLVE 113 G E C++ NAD + QKRY S+ LF R N E G DW N + + +E S +H+ A + + R GC+D+ + +Q+ EC Y V+++VV+V+KFL E Sbjct: 117 GSECCQHSNADFTISMQIDGKQKRYCSQNLFYRVHSRNGEKVPRSWNGFCDWKNAASRIQSHENSIAHRNATITFSQRVQVRGCVDSAIVEQYRQECAYAKSVLEKVVSVIKFLAE 232
BLAST of EMLSAG00000001716 vs. nr
Match: gi|1009395387|gb|KYN16240.1| (Zinc finger MYM-type protein 1 [Trachymyrmex cornetzi]) HSP 1 Score: 71.2478 bits (173), Expect = 3.804e-12 Identity = 40/146 (27.40%), Postives = 67/146 (45.89%), Query Frame = 0 Query: 1 MGPEICRNKNADVGAPERQHQHQKRYFSKTLFTRKLINSE----------------------IFTT-----------GHSDWNNVTAHLAEYERSKSHKKAMVAYVTRCADAGCIDTEVKKQFDSECEYWSEVIKRVVAVVKFLVE 113 +G +NK+A+ + R ++ Q R FS ++F R L N E +F+ G SDW T + +E SK HK ++ +++R + ID E+ +E YW+E++ RV+AV++FL E Sbjct: 12 LGCNYFQNKHANYTSSLRIYKTQNRSFSSSMFVRVLANGEKHDRKWLMYSESTGCVFCYVCKLFSNANSRESKFVKGGFSDWKKATESITSHENSKEHKDCLIIWISRTSATNLIDKELATTIQNETRYWTEILNRVLAVIRFLAE 157
BLAST of EMLSAG00000001716 vs. nr
Match: gi|1009410299|gb|KYN29410.1| (Zinc finger MYM-type protein 1 [Trachymyrmex cornetzi]) HSP 1 Score: 70.8626 bits (172), Expect = 3.908e-12 Identity = 40/146 (27.40%), Postives = 67/146 (45.89%), Query Frame = 0 Query: 1 MGPEICRNKNADVGAPERQHQHQKRYFSKTLFTRKLINSE----------------------IFTT-----------GHSDWNNVTAHLAEYERSKSHKKAMVAYVTRCADAGCIDTEVKKQFDSECEYWSEVIKRVVAVVKFLVE 113 +G +NK+A+ + R ++ Q R FS ++F R L N E +F+ G SDW T + +E SK HK ++ +++R + ID E+ +E YW+E++ RV+AV++FL E Sbjct: 12 LGCNYFQNKHANYTSSLRIYKTQNRSFSSSMFVRVLANGEKHDRKWLMYSESTGCVFCYVCKLFSNANSRESKFVKGGFSDWKKATESITSHENSKEHKDCLIIWISRTSATNLIDKELATTIQNETRYWTEILNRVLAVIRFLAE 157
BLAST of EMLSAG00000001716 vs. nr
Match: gi|1070194130|ref|XP_018368022.1| (PREDICTED: zinc finger MYM-type protein 1-like [Trachymyrmex cornetzi]) HSP 1 Score: 70.4774 bits (171), Expect = 5.339e-12 Identity = 40/146 (27.40%), Postives = 67/146 (45.89%), Query Frame = 0 Query: 1 MGPEICRNKNADVGAPERQHQHQKRYFSKTLFTRKLINSE----------------------IFTT-----------GHSDWNNVTAHLAEYERSKSHKKAMVAYVTRCADAGCIDTEVKKQFDSECEYWSEVIKRVVAVVKFLVE 113 +G +NK+A+ + R ++ Q R FS ++F R L N E +F+ G SDW T + +E SK HK ++ +++R + ID E+ +E YW+E++ RV+AV++FL E Sbjct: 101 LGCNYFQNKHANYTSSLRIYKTQNRSFSSSMFVRVLANGEKHDRKWLMYSESTGCVFCYVCKLFSNANSRESKFVKGGFSDWKKATESITSHENSKEHKDCLIIWISRTSATNLIDKELATTIQNETRYWTEILNRVLAVIRFLAE 246
BLAST of EMLSAG00000001716 vs. nr
Match: gi|1113735434|ref|XP_019356111.1| (PREDICTED: zinc finger MYM-type protein 5-like [Alligator mississippiensis]) HSP 1 Score: 70.4774 bits (171), Expect = 5.467e-12 Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 0 Query: 31 LFTRKLINSEIFTTGHSDWNNVTAHLAEYERSKSHKKAMVAYVTRCADAGCIDTEVKKQFDSECEYWSEVIKRVVAVVKFL 111 LF + F G S+W N+ +A++E SK+H AM +V RC +G ID+ + QF+ EC YW +V+ VVA+VK L Sbjct: 166 LFPYHSKGKQTFVDGQSNWRNIARDIADHETSKAHINAMCKFVQRCKLSGRIDSVLLTQFEKECSYWRKVLSCVVAMVKLL 246 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001716 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 2
BLAST of EMLSAG00000001716 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 0
BLAST of EMLSAG00000001716 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000001716 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001716 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 1
BLAST of EMLSAG00000001716 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 25
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BLAST of EMLSAG00000001716 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1297:29284..29876- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001716-684482 ID=EMLSAG00000001716-684482|Name=EMLSAG00000001716|organism=Lepeophtheirus salmonis|type=gene|length=593bp|location=Sequence derived from alignment at LSalAtl2s1297:29284..29876- (Lepeophtheirus salmonis)back to top Add to Basket
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