EMLSAG00000002218, EMLSAG00000002218-684984 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592857647|gb|GAXK01099915.1| (TSA: Calanus finmarchicus comp253431_c0_seq1 transcribed RNA sequence) HSP 1 Score: 41.9726 bits (97), Expect = 4.842e-4 Identity = 48/185 (25.95%), Postives = 74/185 (40.00%), Query Frame = 0 Query: 2 NRIIFLITLFLTSEWTKILAVTYKCKSIKDCSSLDWLMKNKGNVPFKVSNIFKVLGHIG---CGYNESEPKILCTDDI--VNADDEDETSALRNGVITGYLENEVGCTGSIVYHELKEKTYSISKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKV-DCP 180 R IF L++ + L C +++ C SL + +++ F N + +G + CG+ L D+ DE E S +R + T L T + E + + R +G V V GNCCW+ Y + FRG PG +VKSIKK+ +CP Sbjct: 279 QRFIFPDDFSLSARSS--LQQQRACVTLEQCGSLMRMWESR----FTKMNTLEAIGALDRAHCGF-------LGVSDLPLFRCPDEPE-SGIREVIRTPGLNAPCAGTLKLFVDNDPEPDVVTRERINMLRVVGSRVV---VTGNCCWRLYSSRLFRGRPLSLGPGATQVGVGMVKSIKKLEECP 782
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592929950|gb|GAXK01028595.1| (TSA: Calanus finmarchicus comp468108_c1_seq2 transcribed RNA sequence) HSP 1 Score: 36.5798 bits (83), Expect = 2.542e-2 Identity = 19/42 (45.24%), Postives = 23/42 (54.76%), Query Frame = 0 Query: 140 GNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKV-DCP 180 GNCCW+ + K FRG PG VKSIKK+ +CP Sbjct: 42 GNCCWRLHRNKRFRGRSLTVRPGATHTGIGNVKSIKKLKECP 167
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592929951|gb|GAXK01028594.1| (TSA: Calanus finmarchicus comp468108_c1_seq1 transcribed RNA sequence) HSP 1 Score: 36.5798 bits (83), Expect = 3.081e-2 Identity = 19/42 (45.24%), Postives = 23/42 (54.76%), Query Frame = 0 Query: 140 GNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKV-DCP 180 GNCCW+ + K FRG PG VKSIKK+ +CP Sbjct: 42 GNCCWRLHRNKRFRGRSLTVRPGATHTGIGNVKSIKKLKECP 167
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592953550|gb|GAXK01005003.1| (TSA: Calanus finmarchicus comp349723_c0_seq5 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 5.409e-2 Identity = 29/97 (29.90%), Postives = 43/97 (44.33%), Query Frame = 0 Query: 91 GVITGYLENEVGCTGSIVYHELKEKTYSI-----SKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRG--EFELYEPGFNICPEIIVKSIKKVDCP 180 G I G E GC GS+ + K I S L +K+S+ + V GNCCW + R+ F+G F + N+ +I +SI +C Sbjct: 160 GFIVGK-ERVSGCAGSVTILQGGRKNLKILESTPSIKLTKKKSV-----LMRVEGNCCWTVHARRKFKGFKTFVRSQGELNLSSRLI-RSIASTECS 429
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592953549|gb|GAXK01005004.1| (TSA: Calanus finmarchicus comp349723_c0_seq6 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 5.853e-2 Identity = 29/97 (29.90%), Postives = 43/97 (44.33%), Query Frame = 0 Query: 91 GVITGYLENEVGCTGSIVYHELKEKTYSI-----SKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRG--EFELYEPGFNICPEIIVKSIKKVDCP 180 G I G E GC GS+ + K I S L +K+S+ + V GNCCW + R+ F+G F + N+ +I +SI +C Sbjct: 152 GFIVGK-ERVSGCAGSVTILQGGRKNLKILESTPSIKLTKKKSV-----LMRVEGNCCWTVHARRKFKGFKTFVRSQGELNLSSRLI-RSIASTECS 421
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592953553|gb|GAXK01005000.1| (TSA: Calanus finmarchicus comp349723_c0_seq2 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 9.024e-2 Identity = 29/97 (29.90%), Postives = 43/97 (44.33%), Query Frame = 0 Query: 90 NGVITGYLENEVGCTGSIVYHELKEKTYSI-----SKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRG--EFELYEPGFNICPEIIVKSIKKVDC 179 G I G E GC GS+ + K I S L +K+S+ + V GNCCW + R+ F+G F + N+ +I +SI +C Sbjct: 149 GGFIVGK-ERVSGCAGSVTILQGGRKNLKILESTPSIKLTKKKSV-----LMRVEGNCCWTVHARRKFKGFKTFVRSQGELNLSSRLI-RSIASTEC 418
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592953554|gb|GAXK01004999.1| (TSA: Calanus finmarchicus comp349723_c0_seq1 transcribed RNA sequence) HSP 1 Score: 34.6538 bits (78), Expect = 1.353e-1 Identity = 29/97 (29.90%), Postives = 43/97 (44.33%), Query Frame = 0 Query: 90 NGVITGYLENEVGCTGSIVYHELKEKTYSI-----SKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRG--EFELYEPGFNICPEIIVKSIKKVDC 179 G I G E GC GS+ + K I S L +K+S+ + V GNCCW + R+ F+G F + N+ +I +SI +C Sbjct: 157 GGFIVGK-ERVSGCAGSVTILQGGRKNLKILESTPSIKLTKKKSV-----LMRVEGNCCWTVHARRKFKGFKTFVRSQGELNLSSRLI-RSIASTEC 426
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592931040|gb|GAXK01027513.1| (TSA: Calanus finmarchicus comp2387624_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 1.929e-1 Identity = 26/89 (29.21%), Postives = 46/89 (51.69%), Query Frame = 0 Query: 92 VITGYLENEVGCTGSIVYHELKEKTYSISKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRGE-FELYEPGFNICPEIIVKSIKKVDC 179 VITG + C GSI +L ++ ++ + RS+ VFQ V G C++ ++R+++RG + G + VKS++K+ C Sbjct: 75 VITGPSHPPL-CRGSI---KLLTQSGKVAVVREVDRSLNIAVFQAVVEGCGCYQLFERRNYRGRSYHARRTGEHQVGLRKVKSVRKIPC 329
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592953543|gb|GAXK01005010.1| (TSA: Calanus finmarchicus comp349723_c0_seq12 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 2.126e-1 Identity = 23/70 (32.86%), Postives = 32/70 (45.71%), Query Frame = 0 Query: 90 NGVITGYLENEVGCTGSIVYHELKEKTYSI-----SKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRG 154 G I G E GC GS+ + K I S L +K+S+ + V GNCCW + R+ F+G Sbjct: 157 GGFIVGK-ERVSGCAGSVTILQGGRKNLKILESTPSIKLTKKKSV-----LMRVEGNCCWTVHARRKFKG 348
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592953542|gb|GAXK01005011.1| (TSA: Calanus finmarchicus comp349723_c0_seq13 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 2.460e-1 Identity = 23/70 (32.86%), Postives = 32/70 (45.71%), Query Frame = 0 Query: 90 NGVITGYLENEVGCTGSIVYHELKEKTYSI-----SKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRG 154 G I G E GC GS+ + K I S L +K+S+ + V GNCCW + R+ F+G Sbjct: 149 GGFIVGK-ERVSGCAGSVTILQGGRKNLKILESTPSIKLTKKKSV-----LMRVEGNCCWTVHARRKFKG 340
BLAST of EMLSAG00000002218 vs. L. salmonis peptides
Match: EMLSAP00000002218 (pep:novel supercontig:LSalAtl2s:LSalAtl2s141:411139:412003:1 gene:EMLSAG00000002218 transcript:EMLSAT00000002218 description:"maker-LSalAtl2s141-augustus-gene-4.25") HSP 1 Score: 367.081 bits (941), Expect = 1.277e-130 Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0 Query: 1 MNRIIFLITLFLTSEWTKILAVTYKCKSIKDCSSLDWLMKNKGNVPFKVSNIFKVLGHIGCGYNESEPKILCTDDIVNADDEDETSALRNGVITGYLENEVGCTGSIVYHELKEKTYSISKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKVDCP 180 MNRIIFLITLFLTSEWTKILAVTYKCKSIKDCSSLDWLMKNKGNVPFKVSNIFKVLGHIGCGYNESEPKILCTDDIVNADDEDETSALRNGVITGYLENEVGCTGSIVYHELKEKTYSISKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKVDCP Sbjct: 1 MNRIIFLITLFLTSEWTKILAVTYKCKSIKDCSSLDWLMKNKGNVPFKVSNIFKVLGHIGCGYNESEPKILCTDDIVNADDEDETSALRNGVITGYLENEVGCTGSIVYHELKEKTYSISKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKVDCP 180
BLAST of EMLSAG00000002218 vs. L. salmonis peptides
Match: EMLSAP00000000487 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1075:34619:35273:-1 gene:EMLSAG00000000487 transcript:EMLSAT00000000487 description:"maker-LSalAtl2s1075-augustus-gene-0.29") HSP 1 Score: 167.933 bits (424), Expect = 3.020e-52 Identity = 85/190 (44.74%), Postives = 120/190 (63.16%), Query Frame = 0 Query: 9 TLFLTSEWTKILAVTYK-CKSIKDCSSLDWLMKNKGNVPFKVSNIFKVLGHIGCGYNESEPKILCTDDIVNADDE------------------DETSALRNGVITGYLENEVGCTGSIVYHELKEKTYSISKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKVDC 179 +L S W+ T + C ++DC +DWL+KN+ +VP V NI ++L +I CGYNE+ PK+ C+D+I DDE + +S LR GVI G + C GS V + LK ++ +SK+ RR+RSI G VF++EV+GNCCW+AY+RK FRG+FE Y+PGF+ PEI+VKSI+KV C Sbjct: 7 SLSFLSLWSFSTEKTSRNCTQLQDCGPVDWLLKNRQSVPSSVGNISELLRNINCGYNENGPKVYCSDEISEFDDEFDEIYDDYDEEASGDYDYNNSSQLRGGVIDGLSMDGSTCQGSAVCYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVHC 196
BLAST of EMLSAG00000002218 vs. L. salmonis peptides
Match: EMLSAP00000007690 (pep:novel supercontig:LSalAtl2s:LSalAtl2s447:466913:467611:-1 gene:EMLSAG00000007690 transcript:EMLSAT00000007690 description:"maker-LSalAtl2s447-augustus-gene-4.44") HSP 1 Score: 77.411 bits (189), Expect = 6.864e-18 Identity = 56/190 (29.47%), Postives = 93/190 (48.95%), Query Frame = 0 Query: 7 LITLFLTSEWTKILAVTYKCKSIKDCSSLDWLMKNKGN-VPFKVSNIFKVLGHIGCGYN--ESEPKILCTDDIVNADDEDETSALRNGVITGYLENEVGCTGSIVYHELK--------------EKTYSISKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKVDC 179 L+ LF+T E + + C + +CS L + +K++G+ + + I +L CG++ ++ PK+ C D + + A +GVI G + +V C GS+ H K Y + K L+ + +VF+IEVIGNCCWK +R RG+ +L GF+ P+I KS++ C Sbjct: 13 LLVLFITLE--RRVEGGSNCIPLTECSPLKYFLKHRGSRIKYDRFRINNILWKKRCGFDPYQNTPKVNCPDKEYPVRETNPVQAKSSGVINGKITRDV-CMGSLRIHHNHVRDGSDIKINVLSGRKYYDLIKYLKYR-----EVFRIEVIGNCCWKINERTRHRGKTQLLHGGFDDEPDIQPKSVQVFMC 194 The following BLAST results are available for this feature:
BLAST of EMLSAG00000002218 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 21
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BLAST of EMLSAG00000002218 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000002218 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000002218 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000002218 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000002218 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s141:411139..412003+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000002218-684984 ID=EMLSAG00000002218-684984|Name=EMLSAG00000002218|organism=Lepeophtheirus salmonis|type=gene|length=865bp|location=Sequence derived from alignment at LSalAtl2s141:411139..412003+ (Lepeophtheirus salmonis)back to top Add to Basket
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