EMLSAG00000002218, EMLSAG00000002218-684984 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002218
Unique NameEMLSAG00000002218-684984
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592857647|gb|GAXK01099915.1| (TSA: Calanus finmarchicus comp253431_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.9726 bits (97), Expect = 4.842e-4
Identity = 48/185 (25.95%), Postives = 74/185 (40.00%), Query Frame = 0
Query:    2 NRIIFLITLFLTSEWTKILAVTYKCKSIKDCSSLDWLMKNKGNVPFKVSNIFKVLGHIG---CGYNESEPKILCTDDI--VNADDEDETSALRNGVITGYLENEVGCTGSIVYHELKEKTYSISKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKV-DCP 180
             R IF     L++  +  L     C +++ C SL  + +++    F   N  + +G +    CG+       L   D+      DE E S +R  + T  L      T  +      E      + +   R +G  V    V GNCCW+ Y  + FRG      PG       +VKSIKK+ +CP
Sbjct:  279 QRFIFPDDFSLSARSS--LQQQRACVTLEQCGSLMRMWESR----FTKMNTLEAIGALDRAHCGF-------LGVSDLPLFRCPDEPE-SGIREVIRTPGLNAPCAGTLKLFVDNDPEPDVVTRERINMLRVVGSRVV---VTGNCCWRLYSSRLFRGRPLSLGPGATQVGVGMVKSIKKLEECP 782          
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592929950|gb|GAXK01028595.1| (TSA: Calanus finmarchicus comp468108_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 36.5798 bits (83), Expect = 2.542e-2
Identity = 19/42 (45.24%), Postives = 23/42 (54.76%), Query Frame = 0
Query:  140 GNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKV-DCP 180
            GNCCW+ +  K FRG      PG        VKSIKK+ +CP
Sbjct:   42 GNCCWRLHRNKRFRGRSLTVRPGATHTGIGNVKSIKKLKECP 167          
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592929951|gb|GAXK01028594.1| (TSA: Calanus finmarchicus comp468108_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 36.5798 bits (83), Expect = 3.081e-2
Identity = 19/42 (45.24%), Postives = 23/42 (54.76%), Query Frame = 0
Query:  140 GNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKV-DCP 180
            GNCCW+ +  K FRG      PG        VKSIKK+ +CP
Sbjct:   42 GNCCWRLHRNKRFRGRSLTVRPGATHTGIGNVKSIKKLKECP 167          
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592953550|gb|GAXK01005003.1| (TSA: Calanus finmarchicus comp349723_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 5.409e-2
Identity = 29/97 (29.90%), Postives = 43/97 (44.33%), Query Frame = 0
Query:   91 GVITGYLENEVGCTGSIVYHELKEKTYSI-----SKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRG--EFELYEPGFNICPEIIVKSIKKVDCP 180
            G I G  E   GC GS+   +   K   I     S  L +K+S+      + V GNCCW  + R+ F+G   F   +   N+   +I +SI   +C 
Sbjct:  160 GFIVGK-ERVSGCAGSVTILQGGRKNLKILESTPSIKLTKKKSV-----LMRVEGNCCWTVHARRKFKGFKTFVRSQGELNLSSRLI-RSIASTECS 429          
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592953549|gb|GAXK01005004.1| (TSA: Calanus finmarchicus comp349723_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 5.853e-2
Identity = 29/97 (29.90%), Postives = 43/97 (44.33%), Query Frame = 0
Query:   91 GVITGYLENEVGCTGSIVYHELKEKTYSI-----SKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRG--EFELYEPGFNICPEIIVKSIKKVDCP 180
            G I G  E   GC GS+   +   K   I     S  L +K+S+      + V GNCCW  + R+ F+G   F   +   N+   +I +SI   +C 
Sbjct:  152 GFIVGK-ERVSGCAGSVTILQGGRKNLKILESTPSIKLTKKKSV-----LMRVEGNCCWTVHARRKFKGFKTFVRSQGELNLSSRLI-RSIASTECS 421          
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592953553|gb|GAXK01005000.1| (TSA: Calanus finmarchicus comp349723_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 9.024e-2
Identity = 29/97 (29.90%), Postives = 43/97 (44.33%), Query Frame = 0
Query:   90 NGVITGYLENEVGCTGSIVYHELKEKTYSI-----SKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRG--EFELYEPGFNICPEIIVKSIKKVDC 179
             G I G  E   GC GS+   +   K   I     S  L +K+S+      + V GNCCW  + R+ F+G   F   +   N+   +I +SI   +C
Sbjct:  149 GGFIVGK-ERVSGCAGSVTILQGGRKNLKILESTPSIKLTKKKSV-----LMRVEGNCCWTVHARRKFKGFKTFVRSQGELNLSSRLI-RSIASTEC 418          
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592953554|gb|GAXK01004999.1| (TSA: Calanus finmarchicus comp349723_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 1.353e-1
Identity = 29/97 (29.90%), Postives = 43/97 (44.33%), Query Frame = 0
Query:   90 NGVITGYLENEVGCTGSIVYHELKEKTYSI-----SKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRG--EFELYEPGFNICPEIIVKSIKKVDC 179
             G I G  E   GC GS+   +   K   I     S  L +K+S+      + V GNCCW  + R+ F+G   F   +   N+   +I +SI   +C
Sbjct:  157 GGFIVGK-ERVSGCAGSVTILQGGRKNLKILESTPSIKLTKKKSV-----LMRVEGNCCWTVHARRKFKGFKTFVRSQGELNLSSRLI-RSIASTEC 426          
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592931040|gb|GAXK01027513.1| (TSA: Calanus finmarchicus comp2387624_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 1.929e-1
Identity = 26/89 (29.21%), Postives = 46/89 (51.69%), Query Frame = 0
Query:   92 VITGYLENEVGCTGSIVYHELKEKTYSISKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRGE-FELYEPGFNICPEIIVKSIKKVDC 179
            VITG     + C GSI   +L  ++  ++ +    RS+   VFQ  V G  C++ ++R+++RG  +     G +      VKS++K+ C
Sbjct:   75 VITGPSHPPL-CRGSI---KLLTQSGKVAVVREVDRSLNIAVFQAVVEGCGCYQLFERRNYRGRSYHARRTGEHQVGLRKVKSVRKIPC 329          
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592953543|gb|GAXK01005010.1| (TSA: Calanus finmarchicus comp349723_c0_seq12 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 2.126e-1
Identity = 23/70 (32.86%), Postives = 32/70 (45.71%), Query Frame = 0
Query:   90 NGVITGYLENEVGCTGSIVYHELKEKTYSI-----SKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRG 154
             G I G  E   GC GS+   +   K   I     S  L +K+S+      + V GNCCW  + R+ F+G
Sbjct:  157 GGFIVGK-ERVSGCAGSVTILQGGRKNLKILESTPSIKLTKKKSV-----LMRVEGNCCWTVHARRKFKG 348          
BLAST of EMLSAG00000002218 vs. C. finmarchicus
Match: gi|592953542|gb|GAXK01005011.1| (TSA: Calanus finmarchicus comp349723_c0_seq13 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 2.460e-1
Identity = 23/70 (32.86%), Postives = 32/70 (45.71%), Query Frame = 0
Query:   90 NGVITGYLENEVGCTGSIVYHELKEKTYSI-----SKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRG 154
             G I G  E   GC GS+   +   K   I     S  L +K+S+      + V GNCCW  + R+ F+G
Sbjct:  149 GGFIVGK-ERVSGCAGSVTILQGGRKNLKILESTPSIKLTKKKSV-----LMRVEGNCCWTVHARRKFKG 340          
BLAST of EMLSAG00000002218 vs. L. salmonis peptides
Match: EMLSAP00000002218 (pep:novel supercontig:LSalAtl2s:LSalAtl2s141:411139:412003:1 gene:EMLSAG00000002218 transcript:EMLSAT00000002218 description:"maker-LSalAtl2s141-augustus-gene-4.25")

HSP 1 Score: 367.081 bits (941), Expect = 1.277e-130
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query:    1 MNRIIFLITLFLTSEWTKILAVTYKCKSIKDCSSLDWLMKNKGNVPFKVSNIFKVLGHIGCGYNESEPKILCTDDIVNADDEDETSALRNGVITGYLENEVGCTGSIVYHELKEKTYSISKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKVDCP 180
            MNRIIFLITLFLTSEWTKILAVTYKCKSIKDCSSLDWLMKNKGNVPFKVSNIFKVLGHIGCGYNESEPKILCTDDIVNADDEDETSALRNGVITGYLENEVGCTGSIVYHELKEKTYSISKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKVDCP
Sbjct:    1 MNRIIFLITLFLTSEWTKILAVTYKCKSIKDCSSLDWLMKNKGNVPFKVSNIFKVLGHIGCGYNESEPKILCTDDIVNADDEDETSALRNGVITGYLENEVGCTGSIVYHELKEKTYSISKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKVDCP 180          
BLAST of EMLSAG00000002218 vs. L. salmonis peptides
Match: EMLSAP00000000487 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1075:34619:35273:-1 gene:EMLSAG00000000487 transcript:EMLSAT00000000487 description:"maker-LSalAtl2s1075-augustus-gene-0.29")

HSP 1 Score: 167.933 bits (424), Expect = 3.020e-52
Identity = 85/190 (44.74%), Postives = 120/190 (63.16%), Query Frame = 0
Query:    9 TLFLTSEWTKILAVTYK-CKSIKDCSSLDWLMKNKGNVPFKVSNIFKVLGHIGCGYNESEPKILCTDDIVNADDE------------------DETSALRNGVITGYLENEVGCTGSIVYHELKEKTYSISKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKVDC 179
            +L   S W+     T + C  ++DC  +DWL+KN+ +VP  V NI ++L +I CGYNE+ PK+ C+D+I   DDE                  + +S LR GVI G   +   C GS V + LK  ++ +SK+ RR+RSI G VF++EV+GNCCW+AY+RK FRG+FE Y+PGF+  PEI+VKSI+KV C
Sbjct:    7 SLSFLSLWSFSTEKTSRNCTQLQDCGPVDWLLKNRQSVPSSVGNISELLRNINCGYNENGPKVYCSDEISEFDDEFDEIYDDYDEEASGDYDYNNSSQLRGGVIDGLSMDGSTCQGSAVCYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVHC 196          
BLAST of EMLSAG00000002218 vs. L. salmonis peptides
Match: EMLSAP00000007690 (pep:novel supercontig:LSalAtl2s:LSalAtl2s447:466913:467611:-1 gene:EMLSAG00000007690 transcript:EMLSAT00000007690 description:"maker-LSalAtl2s447-augustus-gene-4.44")

HSP 1 Score: 77.411 bits (189), Expect = 6.864e-18
Identity = 56/190 (29.47%), Postives = 93/190 (48.95%), Query Frame = 0
Query:    7 LITLFLTSEWTKILAVTYKCKSIKDCSSLDWLMKNKGN-VPFKVSNIFKVLGHIGCGYN--ESEPKILCTDDIVNADDEDETSALRNGVITGYLENEVGCTGSIVYHELK--------------EKTYSISKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKVDC 179
            L+ LF+T E  + +     C  + +CS L + +K++G+ + +    I  +L    CG++  ++ PK+ C D      + +   A  +GVI G +  +V C GS+  H                  K Y + K L+ +     +VF+IEVIGNCCWK  +R   RG+ +L   GF+  P+I  KS++   C
Sbjct:   13 LLVLFITLE--RRVEGGSNCIPLTECSPLKYFLKHRGSRIKYDRFRINNILWKKRCGFDPYQNTPKVNCPDKEYPVRETNPVQAKSSGVINGKITRDV-CMGSLRIHHNHVRDGSDIKINVLSGRKYYDLIKYLKYR-----EVFRIEVIGNCCWKINERTRHRGKTQLLHGGFDDEPDIQPKSVQVFMC 194          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002218 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002218 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 21
Match NameE-valueIdentityDescription
gi|592857647|gb|GAXK01099915.1|4.842e-425.95TSA: Calanus finmarchicus comp253431_c0_seq1 trans... [more]
gi|592929950|gb|GAXK01028595.1|2.542e-245.24TSA: Calanus finmarchicus comp468108_c1_seq2 trans... [more]
gi|592929951|gb|GAXK01028594.1|3.081e-245.24TSA: Calanus finmarchicus comp468108_c1_seq1 trans... [more]
gi|592953550|gb|GAXK01005003.1|5.409e-229.90TSA: Calanus finmarchicus comp349723_c0_seq5 trans... [more]
gi|592953549|gb|GAXK01005004.1|5.853e-229.90TSA: Calanus finmarchicus comp349723_c0_seq6 trans... [more]
gi|592953553|gb|GAXK01005000.1|9.024e-229.90TSA: Calanus finmarchicus comp349723_c0_seq2 trans... [more]
gi|592953554|gb|GAXK01004999.1|1.353e-129.90TSA: Calanus finmarchicus comp349723_c0_seq1 trans... [more]
gi|592931040|gb|GAXK01027513.1|1.929e-129.21TSA: Calanus finmarchicus comp2387624_c0_seq1 tran... [more]
gi|592953543|gb|GAXK01005010.1|2.126e-132.86TSA: Calanus finmarchicus comp349723_c0_seq12 tran... [more]
gi|592953542|gb|GAXK01005011.1|2.460e-132.86TSA: Calanus finmarchicus comp349723_c0_seq13 tran... [more]

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BLAST of EMLSAG00000002218 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000022181.277e-130100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s141:41113... [more]
EMLSAP000000004873.020e-5244.74pep:novel supercontig:LSalAtl2s:LSalAtl2s1075:3461... [more]
EMLSAP000000076906.864e-1829.47pep:novel supercontig:LSalAtl2s:LSalAtl2s447:46691... [more]
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BLAST of EMLSAG00000002218 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002218 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002218 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002218 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s141supercontigLSalAtl2s141:411139..412003 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s141-augustus-gene-4.25
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002218 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002218EMLSAT00000002218-698065Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s141:411139..412003+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002218-684984 ID=EMLSAG00000002218-684984|Name=EMLSAG00000002218|organism=Lepeophtheirus salmonis|type=gene|length=865bp|location=Sequence derived from alignment at LSalAtl2s141:411139..412003+ (Lepeophtheirus salmonis)
AGCTTAATTCATAGTTGAGTTGCGCCTACATTGATGATAGTAGAATGAAT AGGATAATTTTCCTTATCACTTTATTCCTCACTTCCGAATGGACGAAAAT ATTAGCTGTAACATACAAATGCAAAAGTATAAAGGATTGCTCTTCTCTCG ACTGGCTTATGAAGAACAAGGGAAATGTCCCTTTTAAGGTTTCAAACATT TTCAAGGTACTCGGGTAAGAAAGTTTGCTTATTAATATTTATTTAAGAGT CACACTAATTGATATACATAGACATATTGGATGCGGCTATAATGAGAGTG AACCCAAAATACTCTGCACTGATGACATAGTTAATGCTGATGATGAAGAT GAAACTTCAGCACTTCGCAATGGAGTAATTACTGGTTATCTGGAAAATGA AGTTGGATGTACTGGATCAATTGTGTATCATGAGCTTAAAGAAAAAACTT ATTCTATCTCGAAAATCCTTCGAAGAAAAAGGAGTATTGGAGGGGATGTT TTTCAGATTGAAGTTATAGGGAATTGCTGTTGGAAAGCTTATGATAGGAA GAGTTTTCGAGGAGAGTTTGAGTTGTATGAACCTGGATTTAATATTTGCC CTGAGATTATAGTTAAATCCATTAAAAAAGTAGACTGCCCTTAAGGATGT GTCTATGTTCATTTTGTACAGTAAATTGTTAGAAATTATCATTCATTGAA CAAATACATTCGATTTTAACTTGTCATAAGCTATCTATTGACTCCTTGGC ATTTCTGTTCAACCAATTAAGACTCATCATCAGGGCTGTGTACTCGGAAA ATTTGTACCGACTTCGCCTACAAAAATTATTATAATTGATGTAAACAATA CTTATTTCTAATCCC
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