EMLSAG00000002559, EMLSAG00000002559-685325 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000002559 vs. C. finmarchicus
Match: gi|592814185|gb|GAXK01140383.1| (TSA: Calanus finmarchicus comp817234_c0_seq1 transcribed RNA sequence) HSP 1 Score: 75.0998 bits (183), Expect = 3.772e-16 Identity = 42/144 (29.17%), Postives = 78/144 (54.17%), Query Frame = 0 Query: 1 MELSMESFNSINGLLKVAEFILAYTLMIMARLGGRSHYYYEPYEFGSEGAQFFVVGVLLAFCIILPGEILTYFFGAHLSLLEIFLSAIGAALYTIAGAITL-YNSRSFHGKYYDIGVAIGSLCIIMAIAMIVDFLVALKNTKIT 143 ++L+ ++NG+LK+AE + + L+++ R GG + Y GS F G ++ F II+P ++TY G +S+LE+ ++ +G L+ + G + + +N R+ +G + A+G I+ + + D LKNTK T Sbjct: 99 IQLNTSFLRTVNGILKIAECVCIFILLLIIRFGGSN---YSALSLGSVNNSFVGQGTVVGFAIIVPAILVTYLLGGSVSILELVINMVGGLLFLVVGGLAIAHNGRAANGSLF----AVGMFSIVTGLVFLADLGWLLKNTKFT 509
BLAST of EMLSAG00000002559 vs. C. finmarchicus
Match: gi|592891701|gb|GAXK01066674.1| (TSA: Calanus finmarchicus comp4914_c3_seq2 transcribed RNA sequence) HSP 1 Score: 56.9954 bits (136), Expect = 3.261e-10 Identity = 31/99 (31.31%), Postives = 54/99 (54.55%), Query Frame = 0 Query: 3 LSMESFNSINGLLKVAEFILAYTLMIMARLGGRSHYYYEPYEFGSEGAQFFVVGVLLAFCIILPGEILTYFFGAHLSLLEIFLSAIGAALYTIAGAITL 101 L+ + G+LK+ E +L ++++ R G H +GS+ F G + + II+P +LTY GA+LS+LE+F++ IG L+ GA+ + Sbjct: 23 LNSSILRTPTGILKMLEIVLVLIVLMICRFGNDGHRK----TWGSDDQDFLGQGTTVGYAIIVPAVLLTYLLGANLSILELFINFIGGILFIAIGALAI 307
BLAST of EMLSAG00000002559 vs. C. finmarchicus
Match: gi|592891697|gb|GAXK01066678.1| (TSA: Calanus finmarchicus comp4914_c5_seq3 transcribed RNA sequence) HSP 1 Score: 56.9954 bits (136), Expect = 3.576e-10 Identity = 31/99 (31.31%), Postives = 54/99 (54.55%), Query Frame = 0 Query: 3 LSMESFNSINGLLKVAEFILAYTLMIMARLGGRSHYYYEPYEFGSEGAQFFVVGVLLAFCIILPGEILTYFFGAHLSLLEIFLSAIGAALYTIAGAITL 101 L+ + G+LK+ E +L ++++ R G H +GS+ F G + + II+P +LTY GA+LS+LE+F++ IG L+ GA+ + Sbjct: 86 LNSSILRTPTGILKMLEIVLVLIVLMICRFGNDGHRK----TWGSDDQDFLGQGTTVGYAIIVPAVLLTYLLGANLSILELFINFIGGILFIAIGALAI 370
BLAST of EMLSAG00000002559 vs. C. finmarchicus
Match: gi|592891696|gb|GAXK01066679.1| (TSA: Calanus finmarchicus comp4914_c5_seq4 transcribed RNA sequence) HSP 1 Score: 56.9954 bits (136), Expect = 3.786e-10 Identity = 31/99 (31.31%), Postives = 54/99 (54.55%), Query Frame = 0 Query: 3 LSMESFNSINGLLKVAEFILAYTLMIMARLGGRSHYYYEPYEFGSEGAQFFVVGVLLAFCIILPGEILTYFFGAHLSLLEIFLSAIGAALYTIAGAITL 101 L+ + G+LK+ E +L ++++ R G H +GS+ F G + + II+P +LTY GA+LS+LE+F++ IG L+ GA+ + Sbjct: 86 LNSSILRTPTGILKMLEIVLVLIVLMICRFGNDGHRK----TWGSDDQDFLGQGTTVGYAIIVPAVLLTYLLGANLSILELFINFIGGILFIAIGALAI 370
BLAST of EMLSAG00000002559 vs. C. finmarchicus
Match: gi|592768702|gb|GAXK01185866.1| (TSA: Calanus finmarchicus comp44758_c1_seq6 transcribed RNA sequence) HSP 1 Score: 52.7582 bits (125), Expect = 4.809e-8 Identity = 46/146 (31.51%), Postives = 82/146 (56.16%), Query Frame = 0 Query: 8 FNSINGLLKVAEFILAYTLMIMARLGGRSHYYYEPYEFGSEGAQFFVVGVLLAFCIILPGEILTYFFGAHL--SLLEIFLSAIGAALYTIAGAITL-YNSRSFHGKYYDI--GVAIGSLCIIMAIAMIVDFLVALKNTKITVIQTR 148 F S+ G+L++ E +L ++I+AR+G + + FG A F +G + IL I+ + G HL +LLE+ ++ +GA L AG++ + Y+S + Y D G+A+G + II I +DFL++L++ KI++ T+ Sbjct: 246 FCSLQGILRILELVLVLIVLILARVGDGGNILH----FGGADADFIGIGASVGLTFILLAFIVCHLVG-HLPPTLLEVLINLVGAILLLTAGSLAISYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLSLRHMKISIK*TK 668
BLAST of EMLSAG00000002559 vs. C. finmarchicus
Match: gi|592768704|gb|GAXK01185864.1| (TSA: Calanus finmarchicus comp44758_c1_seq4 transcribed RNA sequence) HSP 1 Score: 52.373 bits (124), Expect = 6.924e-8 Identity = 46/146 (31.51%), Postives = 82/146 (56.16%), Query Frame = 0 Query: 8 FNSINGLLKVAEFILAYTLMIMARLGGRSHYYYEPYEFGSEGAQFFVVGVLLAFCIILPGEILTYFFGAHL--SLLEIFLSAIGAALYTIAGAITL-YNSRSFHGKYYDI--GVAIGSLCIIMAIAMIVDFLVALKNTKITVIQTR 148 F S+ G+L++ E +L ++I+AR+G + + FG A F +G + IL I+ + G HL +LLE+ ++ +GA L AG++ + Y+S + Y D G+A+G + II I +DFL++L++ KI++ T+ Sbjct: 385 FCSLQGILRILELVLVLIVLILARVGDGGNILH----FGGADADFIGIGASVGLTFILLAFIVCHLVG-HLPPTLLEVLINLVGAILLLTAGSLAISYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLSLRHMKISIK*TK 807
BLAST of EMLSAG00000002559 vs. C. finmarchicus
Match: gi|592768706|gb|GAXK01185862.1| (TSA: Calanus finmarchicus comp44758_c1_seq2 transcribed RNA sequence) HSP 1 Score: 52.373 bits (124), Expect = 7.970e-8 Identity = 46/146 (31.51%), Postives = 82/146 (56.16%), Query Frame = 0 Query: 8 FNSINGLLKVAEFILAYTLMIMARLGGRSHYYYEPYEFGSEGAQFFVVGVLLAFCIILPGEILTYFFGAHL--SLLEIFLSAIGAALYTIAGAITL-YNSRSFHGKYYDI--GVAIGSLCIIMAIAMIVDFLVALKNTKITVIQTR 148 F S+ G+L++ E +L ++I+AR+G + + FG A F +G + IL I+ + G HL +LLE+ ++ +GA L AG++ + Y+S + Y D G+A+G + II I +DFL++L++ KI++ T+ Sbjct: 422 FCSLQGILRILELVLVLIVLILARVGDGGNILH----FGGADADFIGIGASVGLTFILLAFIVCHLVG-HLPPTLLEVLINLVGAILLLTAGSLAISYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLSLRHMKISIK*TK 844
BLAST of EMLSAG00000002559 vs. C. finmarchicus
Match: gi|592768703|gb|GAXK01185865.1| (TSA: Calanus finmarchicus comp44758_c1_seq5 transcribed RNA sequence) HSP 1 Score: 51.9878 bits (123), Expect = 9.602e-8 Identity = 46/146 (31.51%), Postives = 81/146 (55.48%), Query Frame = 0 Query: 8 FNSINGLLKVAEFILAYTLMIMARLGGRSHYYYEPYEFGSEGAQFFVVGVLLAFCIILPGEILTYFFGAHL--SLLEIFLSAIGAALYTIAGAITL-YNSRSFHGKYYDI--GVAIGSLCIIMAIAMIVDFLVALKNTKITVIQTR 148 F S+ G+L++ E +L ++I+AR+G + + FG A F +G + IL I+ + G HL +LLE+ ++ +GA L AG++ + Y+S + Y D G+A+G + II I +DFL++L++ KI + T+ Sbjct: 246 FCSLQGILRILELVLVLIVLILARVGDGGNILH----FGGADADFIGIGASVGLTFILLAFIVCHLVG-HLPPTLLEVLINLVGAILLLTAGSLAISYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLSLRHMKIAIR*TK 668
BLAST of EMLSAG00000002559 vs. C. finmarchicus
Match: gi|592768705|gb|GAXK01185863.1| (TSA: Calanus finmarchicus comp44758_c1_seq3 transcribed RNA sequence) HSP 1 Score: 51.9878 bits (123), Expect = 1.147e-7 Identity = 46/146 (31.51%), Postives = 81/146 (55.48%), Query Frame = 0 Query: 8 FNSINGLLKVAEFILAYTLMIMARLGGRSHYYYEPYEFGSEGAQFFVVGVLLAFCIILPGEILTYFFGAHL--SLLEIFLSAIGAALYTIAGAITL-YNSRSFHGKYYDI--GVAIGSLCIIMAIAMIVDFLVALKNTKITVIQTR 148 F S+ G+L++ E +L ++I+AR+G + + FG A F +G + IL I+ + G HL +LLE+ ++ +GA L AG++ + Y+S + Y D G+A+G + II I +DFL++L++ KI + T+ Sbjct: 385 FCSLQGILRILELVLVLIVLILARVGDGGNILH----FGGADADFIGIGASVGLTFILLAFIVCHLVG-HLPPTLLEVLINLVGAILLLTAGSLAISYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLSLRHMKIAIR*TK 807
BLAST of EMLSAG00000002559 vs. C. finmarchicus
Match: gi|592768707|gb|GAXK01185861.1| (TSA: Calanus finmarchicus comp44758_c1_seq1 transcribed RNA sequence) HSP 1 Score: 51.6026 bits (122), Expect = 1.354e-7 Identity = 46/146 (31.51%), Postives = 81/146 (55.48%), Query Frame = 0 Query: 8 FNSINGLLKVAEFILAYTLMIMARLGGRSHYYYEPYEFGSEGAQFFVVGVLLAFCIILPGEILTYFFGAHL--SLLEIFLSAIGAALYTIAGAITL-YNSRSFHGKYYDI--GVAIGSLCIIMAIAMIVDFLVALKNTKITVIQTR 148 F S+ G+L++ E +L ++I+AR+G + + FG A F +G + IL I+ + G HL +LLE+ ++ +GA L AG++ + Y+S + Y D G+A+G + II I +DFL++L++ KI + T+ Sbjct: 422 FCSLQGILRILELVLVLIVLILARVGDGGNILH----FGGADADFIGIGASVGLTFILLAFIVCHLVG-HLPPTLLEVLINLVGAILLLTAGSLAISYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLSLRHMKIAIR*TK 844
BLAST of EMLSAG00000002559 vs. L. salmonis peptides
Match: EMLSAP00000002559 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1510:83811:84426:-1 gene:EMLSAG00000002559 transcript:EMLSAT00000002559 description:"maker-LSalAtl2s1510-augustus-gene-0.16") HSP 1 Score: 298.516 bits (763), Expect = 1.693e-104 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 Query: 1 MELSMESFNSINGLLKVAEFILAYTLMIMARLGGRSHYYYEPYEFGSEGAQFFVVGVLLAFCIILPGEILTYFFGAHLSLLEIFLSAIGAALYTIAGAITLYNSRSFHGKYYDIGVAIGSLCIIMAIAMIVDFLVALKNTKITVIQTRTL 150 MELSMESFNSINGLLKVAEFILAYTLMIMARLGGRSHYYYEPYEFGSEGAQFFVVGVLLAFCIILPGEILTYFFGAHLSLLEIFLSAIGAALYTIAGAITLYNSRSFHGKYYDIGVAIGSLCIIMAIAMIVDFLVALKNTKITVIQTRTL Sbjct: 1 MELSMESFNSINGLLKVAEFILAYTLMIMARLGGRSHYYYEPYEFGSEGAQFFVVGVLLAFCIILPGEILTYFFGAHLSLLEIFLSAIGAALYTIAGAITLYNSRSFHGKYYDIGVAIGSLCIIMAIAMIVDFLVALKNTKITVIQTRTL 150
BLAST of EMLSAG00000002559 vs. L. salmonis peptides
Match: EMLSAP00000008414 (pep:novel supercontig:LSalAtl2s:LSalAtl2s514:285134:288837:-1 gene:EMLSAG00000008414 transcript:EMLSAT00000008414 description:"maker-LSalAtl2s514-augustus-gene-2.23") HSP 1 Score: 87.0409 bits (214), Expect = 2.996e-20 Identity = 42/108 (38.89%), Postives = 72/108 (66.67%), Query Frame = 0 Query: 43 YEFGSEGAQFFVVGVLLAFCIILPGEILTYFFGAHLSLLEIFLSAIGAALYTIAGAITL--YNSRSFHGKYYDIGVAIGSLCIIMAIAMIVDFLVALKNTKITVIQTR 148 Y FGS +F +G ++ + II+P +LTY G+++S+LE+F++ IG+ L+ + GAI + Y+ G+ D G+A+GSLCI+ ++DFL A+++T+IT+I R Sbjct: 739 YIFGSTDMKFIGIGTIVGYSIIVPCVLLTYMLGSNMSILELFINLIGSILFIVIGAIVIQTYSGCRRRGQCND-GLALGSLCIVSGXLFLIDFLFAIRSTRITIIHXR 845
BLAST of EMLSAG00000002559 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold383_size189472-snap-gene-0.33 (protein:Tk11345 transcript:maker-scaffold383_size189472-snap-gene-0.33-mRNA-1 annotation:"conserved hypothetical protein") HSP 1 Score: 107.842 bits (268), Expect = 5.877e-29 Identity = 55/139 (39.57%), Postives = 90/139 (64.75%), Query Frame = 0 Query: 13 GLLKVAEFILAYTLMIMARLGGRSHYYYEPYEFGSEGAQFFVVGVLLAFCIILPGEILTYFFGAHLSLLEIFLSAIGAALYTIAGAITLYNSRSFHGKYYDIGVAIGSLCIIMAIAMIVDFLVALKNTKITVIQ-TRTL 150 GLLK+ E +L +I R+G + P++ G +G F VG + + II+P ++TY GA+L++LE+F++ IGA L+ GA++L N++++ G Y +G+ IG L I + ++DFL A+KNT++TVIQ TRT+ Sbjct: 247 GLLKILEIVLILLCLIFLRIGNEGY----PFKIGDDGDHFLAVGTFVGYAIIVPSILITYLLGANLTILELFINLIGATLFFTTGALSLVNNKNYGGNRYTMGLIIGILSIAAGVVFLIDFLFAIKNTRVTVIQTTRTI 381
BLAST of EMLSAG00000002559 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold11_size778918-snap-gene-0.14 (protein:Tk03654 transcript:maker-scaffold11_size778918-snap-gene-0.14-mRNA-1 annotation:"PREDICTED: uncharacterized protein LOC100871751") HSP 1 Score: 51.9878 bits (123), Expect = 1.892e-9 Identity = 39/142 (27.46%), Postives = 71/142 (50.00%), Query Frame = 0 Query: 1 MELSMESFNSINGLLKVAEFILAYTLMIMARLGGRSHYYYEPYEFGSEGAQFFVVGVLLAFCIILPGEILTYFFGAHL-SLLEIFLSAIGAALYTIAGAITLYNSRSFHGKYYDIGVAIGSLCIIMAIAMIVDFLVALKNTK 141 M ++ + + +G++K L ++I+AR+G + + + + ++ + +CII +LTYF G+ + +EI S +G+ L+ GAI + H + D G+A+GSL II I + VD L+ K K Sbjct: 1 MAVNKAAIKAPSGMIKFLCLALTIVVIILARIG----FNEDETSYRNVDHKWLTITTFGGYCIIFGAMVLTYFLGSGVPDKMEIVFSFVGSCLFIATGAIHVE-----HHEGNDTGLAMGSLSIITGIILFVDCLLLAKAMK 133 The following BLAST results are available for this feature:
BLAST of EMLSAG00000002559 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000002559 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 15
Pagesback to top
BLAST of EMLSAG00000002559 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000002559 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000002559 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000002559 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000002559 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1510:83811..84426- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000002559-685325 ID=EMLSAG00000002559-685325|Name=EMLSAG00000002559|organism=Lepeophtheirus salmonis|type=gene|length=616bp|location=Sequence derived from alignment at LSalAtl2s1510:83811..84426- (Lepeophtheirus salmonis)back to top Add to Basket
|