EMLSAG00000002610, EMLSAG00000002610-685376 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002610
Unique NameEMLSAG00000002610-685376
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002610 vs. C. finmarchicus
Match: gi|592752586|gb|GAXK01201827.1| (TSA: Calanus finmarchicus comp87440_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 9.522e-2
Identity = 19/51 (37.25%), Postives = 26/51 (50.98%), Query Frame = 0 
Query:   29 HKDTVTSVIKIDEFTFASISLDKYCKIWKL--KESDKIEQIGEFLSQVPLY 77
            H  TV+ V  ID+    + S D   K W++  KES +  QIGEF    P +
Sbjct:  361 HNKTVSGVGHIDKNKLVTCSNDGKIKAWRMEIKESLQFGQIGEFTGHGPAF 513
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BLAST of EMLSAG00000002610 vs. C. finmarchicus
Match: gi|592752587|gb|GAXK01201826.1| (TSA: Calanus finmarchicus comp87440_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 9.603e-2
Identity = 19/51 (37.25%), Postives = 26/51 (50.98%), Query Frame = 0 
Query:   29 HKDTVTSVIKIDEFTFASISLDKYCKIWKL--KESDKIEQIGEFLSQVPLY 77
            H  TV+ V  ID+    + S D   K W++  KES +  QIGEF    P +
Sbjct:  361 HNKTVSGVGHIDKNKLVTCSNDGKIKAWRMEIKESLQFGQIGEFTGHGPAF 513
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BLAST of EMLSAG00000002610 vs. C. finmarchicus
Match: gi|592856490|gb|GAXK01101054.1| (TSA: Calanus finmarchicus comp7712_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.699e+0
Identity = 15/36 (41.67%), Postives = 20/36 (55.56%), Query Frame = 0 
Query:   23 VYEHLSHKDTVTSVIKIDEFTFASISLDKYCKIWKL 58
            V+E  +H      V   D  TFAS SLD+  K+W+L
Sbjct:  437 VFEGHTHYVMEVKVNPKDNNTFASASLDRTVKVWQL 544
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BLAST of EMLSAG00000002610 vs. C. finmarchicus
Match: gi|592856491|gb|GAXK01101053.1| (TSA: Calanus finmarchicus comp7712_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.704e+0
Identity = 15/36 (41.67%), Postives = 20/36 (55.56%), Query Frame = 0 
Query:   23 VYEHLSHKDTVTSVIKIDEFTFASISLDKYCKIWKL 58
            V+E  +H      V   D  TFAS SLD+  K+W+L
Sbjct:  437 VFEGHTHYVMEVKVNPKDNNTFASASLDRTVKVWQL 544
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BLAST of EMLSAG00000002610 vs. C. finmarchicus
Match: gi|592856492|gb|GAXK01101052.1| (TSA: Calanus finmarchicus comp7712_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.704e+0
Identity = 15/36 (41.67%), Postives = 20/36 (55.56%), Query Frame = 0 
Query:   23 VYEHLSHKDTVTSVIKIDEFTFASISLDKYCKIWKL 58
            V+E  +H      V   D  TFAS SLD+  K+W+L
Sbjct:  437 VFEGHTHYVMEVKVNPKDNNTFASASLDRTVKVWQL 544
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BLAST of EMLSAG00000002610 vs. C. finmarchicus
Match: gi|592835326|gb|GAXK01122218.1| (TSA: Calanus finmarchicus comp107311_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.651e+0
Identity = 21/64 (32.81%), Postives = 30/64 (46.88%), Query Frame = 0 
Query:   24 YEHLSHKDTVTSVIKID-EFTFASISLDKYCKIWKLKESDKIEQIGEFLSQVPLYKGGFSRYTK 86
            Y HL   DT+  +I ID +  F +   D Y    + K+    E IG  ++Q P Y   F+ Y K
Sbjct: 1296 YHHLEFPDTIKKLILIDVDLEFRT---DFYDLFQQFKKFSPTEVIGCGVTQSPFYFTFFNYYKK 1478
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BLAST of EMLSAG00000002610 vs. C. finmarchicus
Match: gi|592856487|gb|GAXK01101057.1| (TSA: Calanus finmarchicus comp7712_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 4.157e+0
Identity = 17/48 (35.42%), Postives = 25/48 (52.08%), Query Frame = 0 
Query:   40 DEFTFASISLDKYCKIWKLKESDK---IEQIGEFLSQVPLYKGGFSRY 84
            D  TFAS SLD+  K+W+L  +     +E   + ++ V  Y GG   Y
Sbjct:   13 DNNTFASASLDRTVKVWQLGSAQPNFTLEGHEKGVNCVDYYMGGDKPY 156
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BLAST of EMLSAG00000002610 vs. C. finmarchicus
Match: gi|592856488|gb|GAXK01101056.1| (TSA: Calanus finmarchicus comp7712_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 4.173e+0
Identity = 17/48 (35.42%), Postives = 25/48 (52.08%), Query Frame = 0 
Query:   40 DEFTFASISLDKYCKIWKLKESDK---IEQIGEFLSQVPLYKGGFSRY 84
            D  TFAS SLD+  K+W+L  +     +E   + ++ V  Y GG   Y
Sbjct:   13 DNNTFASASLDRTVKVWQLGSAQPNFTLEGHEKGVNCVDYYMGGDKPY 156
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BLAST of EMLSAG00000002610 vs. C. finmarchicus
Match: gi|592856489|gb|GAXK01101055.1| (TSA: Calanus finmarchicus comp7712_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 4.175e+0
Identity = 17/48 (35.42%), Postives = 25/48 (52.08%), Query Frame = 0 
Query:   40 DEFTFASISLDKYCKIWKLKESDK---IEQIGEFLSQVPLYKGGFSRY 84
            D  TFAS SLD+  K+W+L  +     +E   + ++ V  Y GG   Y
Sbjct:   13 DNNTFASASLDRTVKVWQLGSAQPNFTLEGHEKGVNCVDYYMGGDKPY 156
[Close]
BLAST of EMLSAG00000002610 vs. C. finmarchicus
Match: gi|592793729|gb|GAXK01160839.1| (TSA: Calanus finmarchicus comp6466105_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 7.998e+0
Identity = 22/57 (38.60%), Postives = 25/57 (43.86%), Query Frame = 0 
Query:   18 QSGSIVYEH----LSHKDTVTSVIKIDEFTFASISLDKYCKIWKLKESDKIEQIGEF 70
            Q GS  YE      +  D V   +K    T  S+ LD   KI  LKE DK    GEF
Sbjct:   37 QVGSYSYEGSKMLFTQSDRVEGYVK----THQSVVLDYSVKISPLKEVDKFLTYGEF 195
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BLAST of EMLSAG00000002610 vs. L. salmonis peptides
Match: EMLSAP00000002610 (pep:novel supercontig:LSalAtl2s:LSalAtl2s151:1322452:1323099:-1 gene:EMLSAG00000002610 transcript:EMLSAT00000002610 description:"snap-LSalAtl2s151-processed-gene-13.29")

HSP 1 Score: 209.92 bits (533), Expect = 3.496e-71
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 
Query:    1 MSESVDIFGSFDGHLLIQSGSIVYEHLSHKDTVTSVIKIDEFTFASISLDKYCKIWKLKESDKIEQIGEFLSQVPLYKGGFSRYTKCIILGGAFAVLEALITNL 104
            MSESVDIFGSFDGHLLIQSGSIVYEHLSHKDTVTSVIKIDEFTFASISLDKYCKIWKLKESDKIEQIGEFLSQVPLYKGGFSRYTKCIILGGAFAVLEALITNL
Sbjct:    1 MSESVDIFGSFDGHLLIQSGSIVYEHLSHKDTVTSVIKIDEFTFASISLDKYCKIWKLKESDKIEQIGEFLSQVPLYKGGFSRYTKCIILGGAFAVLEALITNL 104
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BLAST of EMLSAG00000002610 vs. L. salmonis peptides
Match: EMLSAP00000005384 (pep:novel supercontig:LSalAtl2s:LSalAtl2s28:662829:673957:1 gene:EMLSAG00000005384 transcript:EMLSAT00000005384 description:"augustus_masked-LSalAtl2s28-processed-gene-6.0")

HSP 1 Score: 187.963 bits (476), Expect = 9.411e-56
Identity = 91/97 (93.81%), Postives = 93/97 (95.88%), Query Frame = 0 
Query:    1 MSESVDIFGSFDGHLLIQSGSIVYEHLSHKDTVTSVIKIDEFTFASISLDKYCKIWKLKESDKIEQIGEFLSQVPLYKGGFSRYTKCIILGGAFAVL 97
            MSESVDIFGSFDG+LLIQSGS +Y HLSHKDTVTSVIKIDEFTF SISLDKYCKIWKLKESDKIEQIGEFLSQVPLYKGGFSRYTKCIILGGAF VL
Sbjct: 2319 MSESVDIFGSFDGYLLIQSGSNIYTHLSHKDTVTSVIKIDEFTFVSISLDKYCKIWKLKESDKIEQIGEFLSQVPLYKGGFSRYTKCIILGGAFGVL 2415
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002610 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002610 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 10
Match NameE-valueIdentityDescription
gi|592752586|gb|GAXK01201827.1|9.522e-237.25TSA: Calanus finmarchicus comp87440_c0_seq2 transc... [more]
gi|592752587|gb|GAXK01201826.1|9.603e-237.25TSA: Calanus finmarchicus comp87440_c0_seq1 transc... [more]
gi|592856490|gb|GAXK01101054.1|1.699e+041.67TSA: Calanus finmarchicus comp7712_c0_seq3 transcr... [more]
gi|592856491|gb|GAXK01101053.1|1.704e+041.67TSA: Calanus finmarchicus comp7712_c0_seq2 transcr... [more]
gi|592856492|gb|GAXK01101052.1|1.704e+041.67TSA: Calanus finmarchicus comp7712_c0_seq1 transcr... [more]
gi|592835326|gb|GAXK01122218.1|2.651e+032.81TSA: Calanus finmarchicus comp107311_c0_seq1 trans... [more]
gi|592856487|gb|GAXK01101057.1|4.157e+035.42TSA: Calanus finmarchicus comp7712_c0_seq6 transcr... [more]
gi|592856488|gb|GAXK01101056.1|4.173e+035.42TSA: Calanus finmarchicus comp7712_c0_seq5 transcr... [more]
gi|592856489|gb|GAXK01101055.1|4.175e+035.42TSA: Calanus finmarchicus comp7712_c0_seq4 transcr... [more]
gi|592793729|gb|GAXK01160839.1|7.998e+038.60TSA: Calanus finmarchicus comp6466105_c0_seq1 tran... [more]
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BLAST of EMLSAG00000002610 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000026103.496e-71100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s151:13224... [more]
EMLSAP000000053849.411e-5693.81pep:novel supercontig:LSalAtl2s:LSalAtl2s28:662829... [more]
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BLAST of EMLSAG00000002610 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002610 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002610 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002610 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s151supercontigLSalAtl2s151:1322452..1323099 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s151-processed-gene-13.29
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002610 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002610EMLSAT00000002610-698457Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s151:1322452..1323099-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002610-685376 ID=EMLSAG00000002610-685376|Name=EMLSAG00000002610|organism=Lepeophtheirus salmonis|type=gene|length=648bp|location=Sequence derived from alignment at LSalAtl2s151:1322452..1323099- (Lepeophtheirus salmonis)
ATGAGTGAATCTGTTGATATTTTCGGCTCTTTTGACGGGCATCTCTTAAT
ACAATCTGGAAGTATTGTCTATGAGCATTTAAGCCATAAAGATACTGTTA
CTTCAGTGATTAAAATTGATGAGTTCACATTTGCTTCTATCTCTCTGGAT
AAATATTGTAAAATATGGAAACTAAAAGAATCAGACAAGATAGAGCAAAT
AGGAGAATTTCTCAGTCAAGTGCCTTTATATAAAGGAGGGTTTTCTCGAT
ATACCAAGTGTATAATTCTGGGAGGAGCTTTTGGTGTATTATACTTTCTT
AAAATGAAATATTATGGTTTTTCCTTATAACTTTTCACTTAGTTAAATCT
AACCATACACAAGTATGTACCTACAAACTTGGATATCCTTTTCTATGTCC
CCAATTATTAATATTTATCCTTAATCAAGGGTAGTTTAAGGAATTATTTT
ATATTTTGTTGATCTCAAATAAATCAAAGTTTTTTCTTATATGCGTATCT
TATGTTTATGAAAAATACAATACATACATTTTGTGTAATGTTTTGCCTCC
CATTAATTAACTCATTAATTAGAAAAGTCAATCCAAAAAAAAATTAAGTT
CCTTATTCAATTCCAGCAGTACTTGAAGCTTTGATTACGAATCTGTAA
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