EMLSAG00000002850, EMLSAG00000002850-685616 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002850
Unique NameEMLSAG00000002850-685616
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002850 vs. C. finmarchicus
Match: gi|592937631|gb|GAXK01020922.1| (TSA: Calanus finmarchicus comp12873_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 62.7734 bits (151), Expect = 6.773e-11
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 0 
Query:  109 RMRSSWSEFRQFINQSVEDSDYETRKHKSPFPVLSWADKNDLWKLMCKKESGVYRR 164
            RMR SWS+FR FI++ V    ++  +  +P P LSWA+K ++W LM KKESG+Y+R
Sbjct:  717 RMRDSWSQFRSFISEPV----HKAERGIAPLPELSWANKQEMWDLMVKKESGMYKR 872
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BLAST of EMLSAG00000002850 vs. C. finmarchicus
Match: gi|592924357|gb|GAXK01034058.1| (TSA: Calanus finmarchicus comp1821997_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 7.756e+0
Identity = 18/47 (38.30%), Postives = 24/47 (51.06%), Query Frame = 0 
Query:   23 PAILGGGRKRKTEGNLEANKRRRMDDEVQDQXLTQKRVPLAXISXSR 69
            P +L  GRK KT   L   KRRR   ++    L Q++ PL   + SR
Sbjct: 1380 PEMLTSGRKSKTASKLIVFKRRRNPIQLVQSPLLQRQDPLHLHNLSR 1520
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BLAST of EMLSAG00000002850 vs. L. salmonis peptides
Match: EMLSAP00000002850 (pep:novel supercontig:LSalAtl2s:LSalAtl2s16451:133:769:1 gene:EMLSAG00000002850 transcript:EMLSAT00000002850 description:"maker-LSalAtl2s16451-augustus-gene-0.1")

HSP 1 Score: 325.865 bits (834), Expect = 6.287e-115
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 
Query:    1 MASGATGTNSSSSNRSNEGGFVPAILGGGRKRKTEGNLEANKRRRMDDEVQDQXLTQKRVPLAXISXSRQNVXLSPRSPNAGSLKKSPLAKENICFSSSPSSPPSKTLRMRSSWSEFRQFINQSVEDSDYETRKHKSPFPVLSWADKNDLWKLMCKKESGVYRR 164
            MASGATGTNSSSSNRSNEGGFVPAILGGGRKRKTEGNLEANKRRRMDDEVQDQXLTQKRVPLAXISXSRQNVXLSPRSPNAGSLKKSPLAKENICFSSSPSSPPSKTLRMRSSWSEFRQFINQSVEDSDYETRKHKSPFPVLSWADKNDLWKLMCKKESGVYRR
Sbjct:    1 MASGATGTNSSSSNRSNEGGFVPAILGGGRKRKTEGNLEANKRRRMDDEVQDQXLTQKRVPLAXISXSRQNVXLSPRSPNAGSLKKSPLAKENICFSSSPSSPPSKTLRMRSSWSEFRQFINQSVEDSDYETRKHKSPFPVLSWADKNDLWKLMCKKESGVYRR 164
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BLAST of EMLSAG00000002850 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold119_size336447-snap-gene-2.30 (protein:Tk11784 transcript:maker-scaffold119_size336447-snap-gene-2.30-mRNA-1 annotation:"g1 s-specific cyclin-e")

HSP 1 Score: 70.8626 bits (172), Expect = 4.081e-15
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 0 
Query:  105 SKTLRMRSSWSEFRQFINQSVEDSDYETRKHKSPFPVLSWADKNDLWKLMCKKESGVYRR 164
            +K L +RSSWSEFR+FI  S E+      + K+PFP L WAD+  +W L+CKKESG+Y+R
Sbjct:  170 AKKLVLRSSWSEFREFIRTSSENRS----RSKTPFPSLKWADQQTMWDLICKKESGMYQR 225
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002850 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002850 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592937631|gb|GAXK01020922.1|6.773e-1150.00TSA: Calanus finmarchicus comp12873_c0_seq1 transc... [more]
gi|592924357|gb|GAXK01034058.1|7.756e+038.30TSA: Calanus finmarchicus comp1821997_c0_seq1 tran... [more]
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BLAST of EMLSAG00000002850 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000028506.287e-115100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s16451:133... [more]
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BLAST of EMLSAG00000002850 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002850 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002850 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002850 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold119_size336447-snap-gene-2.304.081e-1553.33protein:Tk11784 transcript:maker-scaffold119_size3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s16451supercontigLSalAtl2s16451:133..769 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s16451-augustus-gene-0.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002850 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002850EMLSAT00000002850-698697Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s16451:133..769+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002850-685616 ID=EMLSAG00000002850-685616|Name=EMLSAG00000002850|organism=Lepeophtheirus salmonis|type=gene|length=637bp|location=Sequence derived from alignment at LSalAtl2s16451:133..769+ (Lepeophtheirus salmonis)
ATGGCCTCAGGCGCCACTGGGACCAACTCCTCATCCTCAAATCGYAGTAA
TGAAGGTGGATTTGTTCCTGCTATTCTAGGTGGTGGACGTAAACGGAAGA
CGGAGGGCAATCTAGAAGCCAACAAACGACGCAGAATGGATGATGAGGTC
CAAGATCAAYCCCTCACACAGAAGCGAGTTCCACTGGCTGSTATTTCTMC
CAGCCGGCAAAATGTGGKTCTTTCTCCCAGATCCCCAAATGCTGGTTCCC
TCAAGAAATCTCCTCTTGCCAAAGAAAATATCTGTTTCTCCTCTTCTCCG
AGCTCTCCACCTTCCAAAACCTTGAGAATGCGATCCTCGTGGTCCGAGTA
AGTTACTTTTTAAGTGTAGTTAGCCATAATTGAAGCTTCTCCTTCAGTTC
TCGGGCATGAATTAAATTATTTATGAGACCTATGATACAAGTCCACATAG
TGCCCCATGTACTAACTCTCCAATCTCCTATTCCATCTATAGGTTTCGCC
AATTCATAAATCAGAGTGTGGAAGACTCAGACTATGAGACACGGAAACAC
AAATCCCCTTTCCCCGTATTAAGCTGGGCCGATAAAAATGATCTGTGGAA
GCTCATGTGYAAAAAAGAGTCTGGTGTATATCGTCGA
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