EMLSAG00000002916, EMLSAG00000002916-685682 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002916
Unique NameEMLSAG00000002916-685682
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002916 vs. C. finmarchicus
Match: gi|592759828|gb|GAXK01194585.1| (TSA: Calanus finmarchicus comp8362633_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.657e+0
Identity = 14/31 (45.16%), Postives = 18/31 (58.06%), Query Frame = 0 
Query:   85 SVPPSAPTISFSCETPFLGMKQCVNFDLALL 115
            +VP S P I+  CET  LGMK  +  +  LL
Sbjct:   70 TVPESCPKIALKCETGMLGMKWRIWTEKILL 162
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BLAST of EMLSAG00000002916 vs. C. finmarchicus
Match: gi|592874449|gb|GAXK01083113.1| (TSA: Calanus finmarchicus comp389685_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.421e+0
Identity = 17/40 (42.50%), Postives = 22/40 (55.00%), Query Frame = 0 
Query:   70 TLSATSTVLSALRSSSVPPSAPTISFSCETPFLGMKQCVN 109
            ++SA S +LSA+ +S VPP  PT   S  T      QC N
Sbjct:  548 SMSAPSQILSAIVNSEVPPRTPTPLRSELTELEAELQCCN 667
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BLAST of EMLSAG00000002916 vs. C. finmarchicus
Match: gi|592874450|gb|GAXK01083112.1| (TSA: Calanus finmarchicus comp389685_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.503e+0
Identity = 17/40 (42.50%), Postives = 22/40 (55.00%), Query Frame = 0 
Query:   70 TLSATSTVLSALRSSSVPPSAPTISFSCETPFLGMKQCVN 109
            ++SA S +LSA+ +S VPP  PT   S  T      QC N
Sbjct: 1441 SMSAPSQILSAIVNSEVPPRTPTPLRSELTELEAELQCCN 1560
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BLAST of EMLSAG00000002916 vs. C. finmarchicus
Match: gi|592949463|gb|GAXK01009090.1| (TSA: Calanus finmarchicus comp1412537_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 6.260e+0
Identity = 12/35 (34.29%), Postives = 22/35 (62.86%), Query Frame = 0 
Query:  132 KSRICSNHFSQACYERDISNELLGQSSRFCSRKNL 166
            K  +CS++ S  CY+R  + +++ Q+S F  + NL
Sbjct:  308 KHAMCSSYHSLWCYQRATTEDIIWQASSFIEKCNL 412
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BLAST of EMLSAG00000002916 vs. C. finmarchicus
Match: gi|592896237|gb|GAXK01062138.1| (TSA: Calanus finmarchicus comp3490036_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 8.001e+0
Identity = 16/42 (38.10%), Postives = 20/42 (47.62%), Query Frame = 0 
Query:  109 NFDLALLRNWVKTCKRKDKLDPKKSRICSNHFSQACYERDIS 150
            NF LALL  ++  CK+ +      S     H   ACY  DIS
Sbjct:   11 NFTLALLHQFLNICKKSN----TNSLNLEFHIFPACYTNDIS 124
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BLAST of EMLSAG00000002916 vs. C. finmarchicus
Match: gi|592896238|gb|GAXK01062137.1| (TSA: Calanus finmarchicus comp3490036_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 9.226e+0
Identity = 16/42 (38.10%), Postives = 20/42 (47.62%), Query Frame = 0 
Query:  109 NFDLALLRNWVKTCKRKDKLDPKKSRICSNHFSQACYERDIS 150
            NF LALL  ++  CK+ +      S     H   ACY  DIS
Sbjct:   11 NFTLALLHQFLNICKKSN----TNSLNLEFHIFPACYTNDIS 124
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BLAST of EMLSAG00000002916 vs. L. salmonis peptides
Match: EMLSAP00000002916 (pep:novel supercontig:LSalAtl2s:LSalAtl2s167:96112:98024:1 gene:EMLSAG00000002916 transcript:EMLSAT00000002916 description:"snap-LSalAtl2s167-processed-gene-1.50")

HSP 1 Score: 343.199 bits (879), Expect = 1.356e-121
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 
Query:    1 MMQKETENQQQSNFKNVLEKLARISCDKGVGGKGYKQLHLLRLKHGKVINVFISTRISSVFCIYFCDPITLSATSTVLSALRSSSVPPSAPTISFSCETPFLGMKQCVNFDLALLRNWVKTCKRKDKLDPKKSRICSNHFSQACYERDISNELLGQSSRFCSRKNL 166
            MMQKETENQQQSNFKNVLEKLARISCDKGVGGKGYKQLHLLRLKHGKVINVFISTRISSVFCIYFCDPITLSATSTVLSALRSSSVPPSAPTISFSCETPFLGMKQCVNFDLALLRNWVKTCKRKDKLDPKKSRICSNHFSQACYERDISNELLGQSSRFCSRKNL
Sbjct:    1 MMQKETENQQQSNFKNVLEKLARISCDKGVGGKGYKQLHLLRLKHGKVINVFISTRISSVFCIYFCDPITLSATSTVLSALRSSSVPPSAPTISFSCETPFLGMKQCVNFDLALLRNWVKTCKRKDKLDPKKSRICSNHFSQACYERDISNELLGQSSRFCSRKNL 166
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BLAST of EMLSAG00000002916 vs. L. salmonis peptides
Match: EMLSAP00000005942 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3212:29478:31623:1 gene:EMLSAG00000005942 transcript:EMLSAT00000005942 description:"maker-LSalAtl2s3212-augustus-gene-0.2")

HSP 1 Score: 84.7297 bits (208), Expect = 2.012e-20
Identity = 42/69 (60.87%), Postives = 46/69 (66.67%), Query Frame = 0 
Query:   96 SCETPFLGMKQCVNFDLALLRNWVKTCKRKDKLDPKKSRICSNHFSQACYERDISNELLGQSSRFCSRK 164
            SC +P          D ALL+NWVK CKRKD  +PK SRICSNHFSQ CYERD+ NELLG  SR   RK
Sbjct:   75 SCPSPADTSYHNFPKDPALLQNWVKACKRKDNFNPKTSRICSNHFSQDCYERDLRNELLGLVSRKLLRK 143
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BLAST of EMLSAG00000002916 vs. L. salmonis peptides
Match: EMLSAP00000003902 (pep:novel supercontig:LSalAtl2s:LSalAtl2s210:661286:663673:-1 gene:EMLSAG00000003902 transcript:EMLSAT00000003902 description:"snap-LSalAtl2s210-processed-gene-5.82")

HSP 1 Score: 80.1073 bits (196), Expect = 4.839e-19
Identity = 37/57 (64.91%), Postives = 40/57 (70.18%), Query Frame = 0 
Query:   96 SCETPFLGMKQCVNFDLALLRNWVKTCKRKDKLDPKKSRICSNHFSQACYERDISNE 152
            SC +P          D ALLRNWVK CKRKDK +PKKSRIC NHFSQ CYERD+ NE
Sbjct:   28 SCPSPADTSYHNFPKDSALLRNWVKACKRKDKFNPKKSRICXNHFSQDCYERDLRNE 84
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BLAST of EMLSAG00000002916 vs. L. salmonis peptides
Match: EMLSAP00000004012 (pep:novel supercontig:LSalAtl2s:LSalAtl2s214:185584:187441:1 gene:EMLSAG00000004012 transcript:EMLSAT00000004012 description:"maker-LSalAtl2s214-snap-gene-2.56")

HSP 1 Score: 71.633 bits (174), Expect = 9.681e-16
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 0 
Query:  111 DLALLRNWVKTCKRKDKLDPKKSRICSNHFSQACYERDISNELLGQSSR 159
            D  LLRNWVK C+R  KL+PK SRICSNHFSQ CY+ D S +LLG  SR
Sbjct:  101 DPTLLRNWVKACRRGYKLNPKTSRICSNHFSQDCYQSDFSFKLLGIVSR 149
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BLAST of EMLSAG00000002916 vs. L. salmonis peptides
Match: EMLSAP00000008926 (pep:novel supercontig:LSalAtl2s:LSalAtl2s555:158054:228428:1 gene:EMLSAG00000008926 transcript:EMLSAT00000008926 description:"maker-LSalAtl2s555-augustus-gene-1.35")

HSP 1 Score: 49.2914 bits (116), Expect = 1.026e-7
Identity = 28/98 (28.57%), Postives = 43/98 (43.88%), Query Frame = 0 
Query:   71 LSATSTVLSALRSSSVPPSAPTIS---------FSCETPFLGMKQCVNFDLALLRNWVKTCKRKDKLDPKKSRICSNHFSQACYERDISNELLGQSSR 159
            L    +V  AL     PP +  I          F C++P   +      ++   R W   CKRKD    + +++CS HF+   Y RD+ +ELL  + R
Sbjct:  122 LGGVESVAIALSGKVEPPESNLIRKNRHKICAIFGCKSPDGVIYHNFPKNMVRQRIWKNLCKRKDTFKAENAQVCSMHFNDGSYRRDLEHELLNLTPR 219
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BLAST of EMLSAG00000002916 vs. L. salmonis peptides
Match: EMLSAP00000003578 (pep:novel supercontig:LSalAtl2s:LSalAtl2s19698:24:447:-1 gene:EMLSAG00000003578 transcript:EMLSAT00000003578 description:"maker-LSalAtl2s19698-snap-gene-0.3")

HSP 1 Score: 46.2098 bits (108), Expect = 1.540e-7
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 0 
Query:  118 WVKTCKRKDKLDPKKSRICSNHFSQACYERDISNELLG 155
            WV++C R DK++PK +RIC +HF +  + RD+ NELLG
Sbjct:   70 WVQSCGR-DKVNPKTARICGSHFLKDDFLRDLKNELLG 106
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BLAST of EMLSAG00000002916 vs. L. salmonis peptides
Match: EMLSAP00000007000 (pep:novel supercontig:LSalAtl2s:LSalAtl2s397:1189083:1189928:1 gene:EMLSAG00000007000 transcript:EMLSAT00000007000 description:"augustus-LSalAtl2s397-processed-gene-12.7")

HSP 1 Score: 47.3654 bits (111), Expect = 3.172e-7
Identity = 21/38 (55.26%), Postives = 25/38 (65.79%), Query Frame = 0 
Query:  118 WVKTCKRKDKLDPKKSRICSNHFSQACYERDISNELLG 155
            W + C RK +L  K  RIC NHF +  YERD+ NELLG
Sbjct:   36 WERACHRKGRLG-KTPRICENHFEENNYERDLRNELLG 72
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BLAST of EMLSAG00000002916 vs. Select Arthropod Genomes
Match: gb|KFM65710.1| (hypothetical protein X975_24424, partial [Stegodyphus mimosarum])

HSP 1 Score: 51.6026 bits (122), Expect = 2.477e-8
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 0 
Query:  116 RNWVKTCKRKDKLDPKKSRICSNHFSQACYERDISNELLGQSSR 159
            + W+  C R DK +P  S ICS+HF    +ERD+ NELLG S R
Sbjct:    3 KKWITLCHRADKFNPNTSYICSDHFLVTDFERDMRNELLGLSVR 46
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BLAST of EMLSAG00000002916 vs. Select Arthropod Genomes
Match: gb|EFA11760.1| (Transposable element P transposase-like Protein [Tribolium castaneum])

HSP 1 Score: 54.299 bits (129), Expect = 2.773e-8
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 0 
Query:  113 ALLRNWVKTCKRKDKLDPKKSRICSNHFSQACYERDISNELLGQSSR 159
             + + WV+ C+R DK +PK S+ICS H+    YERD+ +ELLG   R
Sbjct:   95 TIFQEWVRRCRRGDKWNPKTSQICSEHYRVNDYERDLQHELLGSPLR 141
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BLAST of EMLSAG00000002916 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold745_size103310-snap-gene-0.15 (protein:Tk02581 transcript:maker-scaffold745_size103310-snap-gene-0.15-mRNA-1 annotation:"hypothetical protein L798_13354")

HSP 1 Score: 49.2914 bits (116), Expect = 8.936e-8
Identity = 18/45 (40.00%), Postives = 31/45 (68.89%), Query Frame = 0 
Query:  111 DLALLRNWVKTCKRKDKLDPKKSRICSNHFSQACYERDISNELLG 155
            D  L++ W+ +C+   + + + +R+C NHF+  C+ERD+ NELLG
Sbjct:   61 DPLLIQEWLLSCQWDVRFNIETARVCGNHFAPECFERDLRNELLG 105
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002916 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002916 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592759828|gb|GAXK01194585.1|1.657e+045.16TSA: Calanus finmarchicus comp8362633_c0_seq1 tran... [more]
gi|592874449|gb|GAXK01083113.1|2.421e+042.50TSA: Calanus finmarchicus comp389685_c1_seq2 trans... [more]
gi|592874450|gb|GAXK01083112.1|2.503e+042.50TSA: Calanus finmarchicus comp389685_c1_seq1 trans... [more]
gi|592949463|gb|GAXK01009090.1|6.260e+034.29TSA: Calanus finmarchicus comp1412537_c0_seq1 tran... [more]
gi|592896237|gb|GAXK01062138.1|8.001e+038.10TSA: Calanus finmarchicus comp3490036_c0_seq2 tran... [more]
gi|592896238|gb|GAXK01062137.1|9.226e+038.10TSA: Calanus finmarchicus comp3490036_c0_seq1 tran... [more]
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BLAST of EMLSAG00000002916 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 7
Match NameE-valueIdentityDescription
EMLSAP000000029161.356e-121100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s167:96112... [more]
EMLSAP000000059422.012e-2060.87pep:novel supercontig:LSalAtl2s:LSalAtl2s3212:2947... [more]
EMLSAP000000039024.839e-1964.91pep:novel supercontig:LSalAtl2s:LSalAtl2s210:66128... [more]
EMLSAP000000040129.681e-1667.35pep:novel supercontig:LSalAtl2s:LSalAtl2s214:18558... [more]
EMLSAP000000089261.026e-728.57pep:novel supercontig:LSalAtl2s:LSalAtl2s555:15805... [more]
EMLSAP000000035781.540e-752.63pep:novel supercontig:LSalAtl2s:LSalAtl2s19698:24:... [more]
EMLSAP000000070003.172e-755.26pep:novel supercontig:LSalAtl2s:LSalAtl2s397:11890... [more]
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BLAST of EMLSAG00000002916 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002916 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 2
Match NameE-valueIdentityDescription
gb|KFM65710.1|2.477e-850.00hypothetical protein X975_24424, partial [Stegodyp... [more]
gb|EFA11760.1|2.773e-846.81Transposable element P transposase-like Protein [T... [more]
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BLAST of EMLSAG00000002916 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002916 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold745_size103310-snap-gene-0.158.936e-840.00protein:Tk02581 transcript:maker-scaffold745_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s167supercontigLSalAtl2s167:96112..98024 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s167-processed-gene-1.50
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002916 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002916EMLSAT00000002916-698763Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s167:96112..98024+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002916-685682 ID=EMLSAG00000002916-685682|Name=EMLSAG00000002916|organism=Lepeophtheirus salmonis|type=gene|length=1913bp|location=Sequence derived from alignment at LSalAtl2s167:96112..98024+ (Lepeophtheirus salmonis)
ATGATGCAAAAAGAAACCGAAAATCAACAACAGAGTAATTTTAAGAATGT
TTTGGAGAAATTAGCCAGAATCAGCTGTGACAAAGGAGTTGGTGGAAAAG
GATATAAACAATTACATTTGCTAGTATTACTCCAATGTCGATCACCAATT
CTACTCTGAGTCCAACAAGGGCTTATAATTCTAACTCTGCAATAAATCCT
CAAGGTTACACTCTGTCTTTTATGAGCATACACGGATGTTCAATCAATGT
AGTAGAAAAGGAAGTTAACTCATCAGGAATTAAATAATAATGACAACTTT
GCTAAGAAAAAAAAATTATTCTTCAAATTACCAATTCAAAAATAAAAAAT
CGGTTCAGCTAAAAAATGCACACAATTTATTAATATGATGCATTAAGGAA
GTTATATAAATTAAAATAACTATGAGTAAGAAACTGTTCTTTATTTAAAA
AAAAAAGATTTAATATCGTTAAATCAAGGTACATATTCATCCCTTACGGG
GAATTACATAAAAGTTTGTAAATCCACATTAAATTAAAGACATTAAAGAA
ATGTCTTGTACAAAATCTTGAACAAGATTGAAATGGATGTAAGCAGTTTT
GGATTTAGAGTTTATTTACAAGTGTAGTAGAAGTTCTAAGGCGGCTATTA
AATGCCCTTATTTGAATGAATGCTTTTTATTTTTATGAGGTTTTTTTTAA
AGTGAGGGCTTTCTCAGAAATGGGAGGCTGTTCAGGCGGCCCCCAAAAAG
TAATACTTGGAGACTGTTATAGCACATACTATACTGTAATACAGAATTTA
CGACGACTCTAGGGTATATGGATAAGGGAAAACACCATTTATTTCATTAT
TGAATAATTATCTCCGCCAACGATGTTAAATGGAGGTAATGTTTTTGCCT
CTGTTTGTTAGTCGCCAGGATTACTGCAAAAGTTACAGATCGATTTTGAT
TAAACTTGGTACGAACCTTATATATAGTTGCAGCTAGAGGCCATTAAATT
TTGAGAGGTCAAGGTAGCACAAAACATTAAGAATGCATAATCGATCTTAA
CTTTGAAGCAAATTGAGATACATAGCTCCATTTGATTTTAGATGGAGGTT
TTGGCCTCTACCGATATTCCATTCTAGCCAAGGTAGCTAATATTATTGGT
ATGTCGCTTAGCATCTGCCTTCTGATTGGCTGAGCTGAGTGACGTCACAA
ATGGTGTATTCACTCAAAAATTAAAGCAATAAGTGAGTTGAAAATTTATA
GACTTCTTTCACTGAACAAAATCAGAACTTAAATAGCGCCTCAAGCATGG
AAAAGTCATCAATGTATTCATCAGCACCCGAATCTCCAGTGTCTTCTGTA
TCTACTTTTGTGACCCCATTACTCTTTCTGCTACTTCCACAGTCTTGTCT
GCATTGAGGTCCTCATCTGTGCCGCCATCTGCTCCTACAATATCCTTCTC
GTGTGAAACTCCATTTTTGGGCATGAAGCAATGTGTTAATTTTGTAGGTT
AATTAATGCCAAAAAAATGGTATTTCAAATATTATTGATCAGAAAAATAG
GCAGACGGGCTTAGACTTTTTCATAAGACTTGATGAATGATATATATTAC
TGTAAGTTATTTTTTACCCGAAATCGAATTTCAACAACCACCAAAACCAC
TACAGTCAAAGAAACGACGTCATATTATTCCTACGTGTGCCGTGGCATCT
TGCCCATAACCAGCTGATACATCCTATCATAATTTTCCAAAGGACCTTGC
ATTGCTCCGAAATTGGGTGAAGACCTGCAAAAGAAAAGACAAGTTGGATC
CAAAAAAATCTCGCATCTGTAGCAATCATTTCAGCCAAGCCTGTTATGAA
AGAGATATCAGTAATGAGTTACTGGGACAATCATCACGATTTTGCTCAAG
AAAGAATCTGTAA
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