EMLSAG00000003170, EMLSAG00000003170-685936 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003170
Unique NameEMLSAG00000003170-685936
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000003170 vs. GO
Match: - (symbol:ddx26b "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B" species:7955 "Danio rerio" [GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus" evidence=IEA] ZFIN:ZDB-GENE-040426-1150 GO:GO:0005634 Gene3D:3.40.50.410 InterPro:IPR002035 SMART:SM00327 PROSITE:PS50234 CTD:203522 eggNOG:NOG276796 HOGENOM:HOG000015308 HOVERGEN:HBG081468 EMBL:BC054905 RefSeq:NP_956728.1 UniGene:Dr.82458 ProteinModelPortal:Q7SYD9 STRING:7955.ENSDARP00000026435 PRIDE:Q7SYD9 GeneID:393406 KEGG:dre:393406 InParanoid:Q7SYD9 KO:K13143 NextBio:20814450 PRO:PR:Q7SYD9 Uniprot:Q7SYD9)

HSP 1 Score: 46.2098 bits (108), Expect = 8.013e-6
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHN-PIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ++LK MP PLRE++ + P R H  GNPFK +K  ++ +   EFV
Sbjct:  591 MGNYQEYLKMMPSPLREIDPDQPKRLHTFGNPFKQDKKGMMIDEADEFV 639          
BLAST of EMLSAG00000003170 vs. GO
Match: - (symbol:INTS6 "Integrator complex subunit 6" species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] GO:GO:0005634 GO:GO:0015629 KO:K13143 EMBL:AL354820 EMBL:AL137780 UniGene:Hs.439440 GeneID:26512 KEGG:hsa:26512 CTD:26512 HGNC:HGNC:14879 ChiTaRS:INTS6 RefSeq:XP_005266398.1 Ensembl:ENST00000425000 HOGENOM:HOG000008189 NextBio:35484438 ArrayExpress:C9J0C6 Bgee:C9J0C6 Uniprot:C9J0C6)

HSP 1 Score: 45.8246 bits (107), Expect = 8.085e-6
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVE-HNPIRQHKSGNPFKINKTIILDEVFHEFVPN 50
            M NYQ++LK++P PLRE++   P R H  GNPFK++K  ++ +   EFV  
Sbjct:  155 MGNYQEYLKQVPSPLRELDPDQPRRLHTFGNPFKLDKKGMMIDEADEFVAG 205          
BLAST of EMLSAG00000003170 vs. GO
Match: - (symbol:INTS6 "Uncharacterized protein" species:9913 "Bos taurus" [GO:0015629 "actin cytoskeleton" evidence=IEA] [GO:0016180 "snRNA processing" evidence=IEA] [GO:0032039 "integrator complex" evidence=IEA] GO:GO:0015629 GO:GO:0032039 GeneTree:ENSGT00390000016655 OrthoDB:EOG7ZGX2C TreeFam:TF323386 GO:GO:0016180 OMA:EQCAEEN EMBL:DAAA02032953 EMBL:DAAA02032954 EMBL:DAAA02032955 Ensembl:ENSBTAT00000003868 Uniprot:E1BF57)

HSP 1 Score: 46.2098 bits (108), Expect = 8.289e-6
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHN-PIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ++LK++P PLRE++ + P R H  GNPFK++K  ++ +   EFV
Sbjct:  579 MGNYQEYLKQVPSPLRELDPDQPRRLHTFGNPFKLDKKGMMIDEADEFV 627          
BLAST of EMLSAG00000003170 vs. GO
Match: - (symbol:INTS6 "Uncharacterized protein" species:9823 "Sus scrofa" [GO:0015629 "actin cytoskeleton" evidence=IEA] [GO:0016180 "snRNA processing" evidence=IEA] [GO:0032039 "integrator complex" evidence=IEA] GO:GO:0015629 GO:GO:0032039 GeneTree:ENSGT00390000016655 OrthoDB:EOG7ZGX2C TreeFam:TF323386 GO:GO:0016180 OMA:EQCAEEN EMBL:CU041247 Ensembl:ENSSSCT00000010282 Uniprot:F1RK31)

HSP 1 Score: 45.8246 bits (107), Expect = 8.604e-6
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHN-PIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ++LK++P PLRE++ + P R H  GNPFK++K  ++ +   EFV
Sbjct:  579 MGNYQEYLKQVPSPLRELDPDQPRRLHTFGNPFKLDKKGMMIDEADEFV 627          
BLAST of EMLSAG00000003170 vs. GO
Match: - (symbol:INTS6 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0015629 "actin cytoskeleton" evidence=IEA] [GO:0016180 "snRNA processing" evidence=IEA] [GO:0032039 "integrator complex" evidence=IEA] GO:GO:0032039 GeneTree:ENSGT00390000016655 OrthoDB:EOG7ZGX2C TreeFam:TF323386 GO:GO:0016180 EMBL:AADN03001259 Ensembl:ENSGALT00000027488 NextBio:20822009 PRO:PR:E1BV07 Uniprot:E1BV07)

HSP 1 Score: 45.8246 bits (107), Expect = 8.678e-6
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHN-PIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ++LK++P PLRE++ + P R H  GNPFK++K  ++ +   EFV
Sbjct:  514 MGNYQEYLKQIPSPLRELDPDQPRRLHTFGNPFKLDKKGMMIDEADEFV 562          
BLAST of EMLSAG00000003170 vs. GO
Match: - (symbol:INTS6 "Integrator complex subunit 6" species:9606 "Homo sapiens" [GO:0004888 "transmembrane signaling receptor activity" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0007165 "signal transduction" evidence=TAS] [GO:0015629 "actin cytoskeleton" evidence=IDA] [GO:0016180 "snRNA processing" evidence=IDA] [GO:0032039 "integrator complex" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] GO:GO:0015629 GO:GO:0004888 Gene3D:3.40.50.410 InterPro:IPR002035 SMART:SM00327 PROSITE:PS50234 GO:GO:0032039 eggNOG:NOG276796 HOGENOM:HOG000015308 HOVERGEN:HBG081468 OrthoDB:EOG7ZGX2C TreeFam:TF323386 GO:GO:0016180 KO:K13143 EMBL:AF097645 EMBL:AL833524 EMBL:AL354820 EMBL:AL137780 EMBL:BC013358 EMBL:BC018725 EMBL:BC032386 EMBL:BC039829 EMBL:AF141326 EMBL:AL117626 EMBL:BK005730 PIR:T17330 RefSeq:NP_001035026.1 RefSeq:NP_001035027.1 RefSeq:NP_036273.1 RefSeq:XP_005266396.1 UniGene:Hs.439440 ProteinModelPortal:Q9UL03 SMR:Q9UL03 BioGrid:117717 DIP:DIP-38627N IntAct:Q9UL03 MINT:MINT-4541530 STRING:9606.ENSP00000310260 PhosphoSite:Q9UL03 DMDM:74753376 PaxDb:Q9UL03 PRIDE:Q9UL03 Ensembl:ENST00000311234 Ensembl:ENST00000398119 Ensembl:ENST00000442263 GeneID:26512 KEGG:hsa:26512 UCSC:uc001vfi.3 UCSC:uc001vfm.2 CTD:26512 GeneCards:GC13M051928 HGNC:HGNC:14879 HPA:HPA001552 HPA:HPA001846 MIM:604331 neXtProt:NX_Q9UL03 PharmGKB:PA27212 InParanoid:Q9UL03 OMA:EQCAEEN PhylomeDB:Q9UL03 ChiTaRS:INTS6 GeneWiki:INTS6 GenomeRNAi:26512 NextBio:48812 PRO:PR:Q9UL03 ArrayExpress:Q9UL03 Bgee:Q9UL03 CleanEx:HS_INTS6 Genevestigator:Q9UL03 Uniprot:Q9UL03)

HSP 1 Score: 45.8246 bits (107), Expect = 8.786e-6
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHN-PIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ++LK++P PLRE++ + P R H  GNPFK++K  ++ +   EFV
Sbjct:  587 MGNYQEYLKQVPSPLRELDPDQPRRLHTFGNPFKLDKKGMMIDEADEFV 635          
BLAST of EMLSAG00000003170 vs. GO
Match: - (symbol:INTS6 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0015629 "actin cytoskeleton" evidence=IEA] [GO:0016180 "snRNA processing" evidence=IEA] [GO:0032039 "integrator complex" evidence=IEA] GO:GO:0015629 GO:GO:0032039 GeneTree:ENSGT00390000016655 TreeFam:TF323386 GO:GO:0016180 OMA:EQCAEEN EMBL:AAEX03013062 EMBL:AAEX03013063 EMBL:AAEX03013064 EMBL:AAEX03013065 Ensembl:ENSCAFT00000030029 Uniprot:F1PKG3)

HSP 1 Score: 45.8246 bits (107), Expect = 8.939e-6
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHN-PIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ++LK++P PLRE++ + P R H  GNPFK++K  ++ +   EFV
Sbjct:  521 MGNYQEYLKQVPSPLRELDPDQPRRLHTFGNPFKLDKKGMMIDEADEFV 569          
BLAST of EMLSAG00000003170 vs. GO
Match: - (symbol:Ints6 "integrator complex subunit 6" species:10090 "Mus musculus" [GO:0005634 "nucleus" evidence=ISO] [GO:0015629 "actin cytoskeleton" evidence=ISO] [GO:0016180 "snRNA processing" evidence=ISO] [GO:0032039 "integrator complex" evidence=ISO] MGI:MGI:1202397 GO:GO:0015629 Gene3D:3.40.50.410 InterPro:IPR002035 SMART:SM00327 PROSITE:PS50234 GO:GO:0032039 eggNOG:NOG276796 GeneTree:ENSGT00390000016655 HOGENOM:HOG000015308 HOVERGEN:HBG081468 OrthoDB:EOG7ZGX2C TreeFam:TF323386 GO:GO:0016180 KO:K13143 CTD:26512 OMA:EQCAEEN ChiTaRS:INTS6 EMBL:AK046055 EMBL:AK172178 EMBL:BC058637 EMBL:BC059263 EMBL:U57368 PIR:T30176 RefSeq:NP_032741.2 RefSeq:XP_006518745.1 UniGene:Mm.319684 UniGene:Mm.441110 ProteinModelPortal:Q6PCM2 SMR:Q6PCM2 BioGrid:201810 IntAct:Q6PCM2 MINT:MINT-4109478 STRING:10090.ENSMUSP00000086788 PhosphoSite:Q6PCM2 PaxDb:Q6PCM2 PRIDE:Q6PCM2 Ensembl:ENSMUST00000053959 GeneID:18130 KEGG:mmu:18130 UCSC:uc007ugp.2 UCSC:uc007ugr.1 UCSC:uc007ugu.1 InParanoid:Q6PCM2 NextBio:293364 PRO:PR:Q6PCM2 Bgee:Q6PCM2 CleanEx:MM_INTS6 Genevestigator:Q6PCM2 Uniprot:Q6PCM2)

HSP 1 Score: 45.8246 bits (107), Expect = 8.942e-6
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHN-PIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ++LK++P PLRE++ + P R H  GNPFK++K  ++ +   EFV
Sbjct:  586 MGNYQEYLKQVPSPLRELDPDQPRRLHTFGNPFKLDKKGMMIDEADEFV 634          
BLAST of EMLSAG00000003170 vs. GO
Match: - (symbol:INTS6 "cDNA FLJ45485 fis, clone BRTHA2002661, highly similar to Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26 (DDX26), mRNA" species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] GO:GO:0005634 GO:GO:0015629 EMBL:CH471075 HOGENOM:HOG000015308 HOVERGEN:HBG081468 KO:K13143 EMBL:AL354820 EMBL:AL137780 UniGene:Hs.439440 GeneID:26512 KEGG:hsa:26512 CTD:26512 HGNC:HGNC:14879 ChiTaRS:INTS6 EMBL:AK074946 EMBL:AK096696 EMBL:AK128795 RefSeq:XP_005266397.1 Ensembl:ENST00000497989 NextBio:35469368 Uniprot:B3KQH5)

HSP 1 Score: 45.8246 bits (107), Expect = 9.405e-6
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHN-PIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ++LK++P PLRE++ + P R H  GNPFK++K  ++ +   EFV
Sbjct:  409 MGNYQEYLKQVPSPLRELDPDQPRRLHTFGNPFKLDKKGMMIDEADEFV 457          
BLAST of EMLSAG00000003170 vs. GO
Match: - (symbol:INTS6 "Integrator complex subunit 6" species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] GO:GO:0005634 GO:GO:0015629 EMBL:CH471075 EMBL:AL354820 EMBL:AL137780 UniGene:Hs.439440 HGNC:HGNC:14879 ChiTaRS:INTS6 ProteinModelPortal:G5E9X1 Ensembl:ENST00000490542 NextBio:35518258 ArrayExpress:G5E9X1 Uniprot:G5E9X1)

HSP 1 Score: 45.8246 bits (107), Expect = 9.438e-6
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVE-HNPIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ++LK++P PLRE++   P R H  GNPFK++K  ++ +   EFV
Sbjct:  271 MGNYQEYLKQVPSPLRELDPDQPRRLHTFGNPFKLDKKGMMIDEADEFV 319          
BLAST of EMLSAG00000003170 vs. C. finmarchicus
Match: gi|592776723|gb|GAXK01177845.1| (TSA: Calanus finmarchicus comp14041_c7_seq5 transcribed RNA sequence)

HSP 1 Score: 62.3882 bits (150), Expect = 3.084e-12
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIIL-DEV 43
            M NYQD+LK+ P+PLRE+E  P+RQH  GNPFKINK +++ DEV
Sbjct:   49 MGNYQDYLKKQPLPLRELESQPVRQHMFGNPFKINKNLMMTDEV 180          
BLAST of EMLSAG00000003170 vs. C. finmarchicus
Match: gi|592776726|gb|GAXK01177842.1| (TSA: Calanus finmarchicus comp14041_c7_seq2 transcribed RNA sequence)

HSP 1 Score: 62.3882 bits (150), Expect = 4.587e-12
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIIL-DEV 43
            M NYQD+LK+ P+PLRE+E  P+RQH  GNPFKINK +++ DEV
Sbjct:   49 MGNYQDYLKKQPLPLRELESQPVRQHMFGNPFKINKNLMMTDEV 180          
BLAST of EMLSAG00000003170 vs. C. finmarchicus
Match: gi|592776717|gb|GAXK01177851.1| (TSA: Calanus finmarchicus comp14041_c7_seq11 transcribed RNA sequence)

HSP 1 Score: 36.1946 bits (82), Expect = 7.603e-4
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNP 22
            M NYQD+LK+ P+PLRE+E  P
Sbjct:    3 MGNYQDYLKKQPLPLRELESQP 68          
BLAST of EMLSAG00000003170 vs. C. finmarchicus
Match: gi|592776706|gb|GAXK01177862.1| (TSA: Calanus finmarchicus comp14041_c9_seq11 transcribed RNA sequence)

HSP 1 Score: 36.5798 bits (83), Expect = 1.006e-3
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNP 22
            M NYQD+LK+ P+PLRE+E  P
Sbjct:  352 MGNYQDYLKKQPLPLRELESQP 417          
BLAST of EMLSAG00000003170 vs. C. finmarchicus
Match: gi|592776722|gb|GAXK01177846.1| (TSA: Calanus finmarchicus comp14041_c7_seq6 transcribed RNA sequence)

HSP 1 Score: 36.1946 bits (82), Expect = 3.498e-3
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNP 22
            M NYQD+LK+ P+PLRE+E  P
Sbjct:    3 MGNYQDYLKKQPLPLRELESQP 68          
BLAST of EMLSAG00000003170 vs. C. finmarchicus
Match: gi|592776725|gb|GAXK01177843.1| (TSA: Calanus finmarchicus comp14041_c7_seq3 transcribed RNA sequence)

HSP 1 Score: 36.1946 bits (82), Expect = 4.026e-3
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNP 22
            M NYQD+LK+ P+PLRE+E  P
Sbjct:    3 MGNYQDYLKKQPLPLRELESQP 68          
BLAST of EMLSAG00000003170 vs. C. finmarchicus
Match: gi|592814388|gb|GAXK01140180.1| (TSA: Calanus finmarchicus comp5574747_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 1.731e+0
Identity = 21/56 (37.50%), Postives = 26/56 (46.43%), Query Frame = 0
Query:    3 NYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEVFHEFVPNRMELLFIQ 58
            N + FL   P     V  N I++ KSG P KIN   I  E + E   N  E+L  Q
Sbjct:   70 NLKQFLSDNPDVNEGVLRNIIKKVKSGMPKKINSESIYYERYKESWKNNKEILDGQ 237          
BLAST of EMLSAG00000003170 vs. C. finmarchicus
Match: gi|592784777|gb|GAXK01169791.1| (TSA: Calanus finmarchicus comp1184_c6_seq6 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.213e+0
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 0
Query:    2 ENYQDFLKRMPIPLREVEHNPIR 24
            + +QDFL  + +  REV H P R
Sbjct:  123 KTFQDFLSCLHVAAREVNHQPSR 191          
BLAST of EMLSAG00000003170 vs. L. salmonis peptides
Match: EMLSAP00000003170 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1769:18781:18963:1 gene:EMLSAG00000003170 transcript:EMLSAT00000003170 description:"snap_masked-LSalAtl2s1769-processed-gene-0.4")

HSP 1 Score: 122.094 bits (305), Expect = 5.388e-38
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEVFHEFVPNRMELLFIQEE 60
            MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEVFHEFVPNRMELLFIQEE
Sbjct:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEVFHEFVPNRMELLFIQEE 60          
BLAST of EMLSAG00000003170 vs. L. salmonis peptides
Match: EMLSAP00000001053 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1173:43730:64482:1 gene:EMLSAG00000001053 transcript:EMLSAT00000001053 description:"snap_masked-LSalAtl2s1173-processed-gene-0.12")

HSP 1 Score: 73.1738 bits (178), Expect = 9.762e-17
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQD+LKRMP PL+E+E+ P+RQH  GNPFKINK I+LDEV  E  
Sbjct:  513 MGNYQDYLKRMPTPLKEIENTPVRQHMFGNPFKINKNIMLDEVVDEIA 560          
BLAST of EMLSAG00000003170 vs. L. salmonis peptides
Match: EMLSAP00000008481 (pep:novel supercontig:LSalAtl2s:LSalAtl2s51:917098:919923:1 gene:EMLSAG00000008481 transcript:EMLSAT00000008481 description:"augustus_masked-LSalAtl2s51-processed-gene-9.2")

HSP 1 Score: 70.0922 bits (170), Expect = 1.413e-15
Identity = 34/48 (70.83%), Postives = 36/48 (75.00%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQDFLK MP PLRE+E  PIRQH  GNPFKINK I+LDEV  E  
Sbjct:  605 MGNYQDFLKHMPPPLREIEDIPIRQHMFGNPFKINKNIMLDEVVDEIA 652          
BLAST of EMLSAG00000003170 vs. SwissProt
Match: gi|126258172|sp|Q2TAF4.1|INT6A_XENLA (RecName: Full=Integrator complex subunit 6-A; Short=Int6-A)

HSP 1 Score: 48.1358 bits (113), Expect = 2.676e-7
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHN-PIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ+FLK +P PLRE++++ P R H  GNPFK++K  ++ +   EFV
Sbjct:  587 MGNYQEFLKHIPSPLRELDYDQPRRLHTFGNPFKLDKKGMMIDEADEFV 635          
BLAST of EMLSAG00000003170 vs. SwissProt
Match: gi|82180065|sp|Q5U4W6.1|INT6B_XENLA (RecName: Full=Integrator complex subunit 6-B; Short=Int6-B)

HSP 1 Score: 47.3654 bits (111), Expect = 5.530e-7
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHN-PIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ++LK +P PLRE++++ P R H  GNPFK++K  ++ +   EFV
Sbjct:  587 MGNYQEYLKHIPSPLRELDYDQPRRLHTFGNPFKLDKKGMMIDEADEFV 635          
BLAST of EMLSAG00000003170 vs. Select Arthropod Genomes
Match: XP_006564516.1 (PREDICTED: integrator complex subunit 6 isoform X1 [Apis mellifera])

HSP 1 Score: 60.077 bits (144), Expect = 7.006e-12
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEV 43
            M NYQ++LKRM  PLRE+E  P+RQH  GNPFKI+K +++DE 
Sbjct:  633 MGNYQEYLKRMTPPLREIESAPVRQHMFGNPFKIDKRMMVDEA 675          
BLAST of EMLSAG00000003170 vs. Select Arthropod Genomes
Match: XP_395179.2 (PREDICTED: integrator complex subunit 6 isoform X2 [Apis mellifera])

HSP 1 Score: 60.077 bits (144), Expect = 7.356e-12
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEV 43
            M NYQ++LKRM  PLRE+E  P+RQH  GNPFKI+K +++DE 
Sbjct:  623 MGNYQEYLKRMTPPLREIESAPVRQHMFGNPFKIDKRMMVDEA 665          
BLAST of EMLSAG00000003170 vs. Select Arthropod Genomes
Match: EFX73352.1 (hypothetical protein DAPPUDRAFT_188894 [Daphnia pulex])

HSP 1 Score: 59.6918 bits (143), Expect = 1.141e-11
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ++LKR+  PLRE+E  P+RQH  GNPFKI+K +++DE   + V
Sbjct:  584 MGNYQEYLKRIAPPLREIESTPVRQHMFGNPFKIDKRMMVDEADIDLV 631          
BLAST of EMLSAG00000003170 vs. Select Arthropod Genomes
Match: EEB20415.1 (dice1/dead/H box polypeptide, putative [Pediculus humanus corporis])

HSP 1 Score: 57.3806 bits (137), Expect = 6.769e-11
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEV 43
            M NYQ+ LKR+P PL+E+E  P+RQH  GNPFKI+K +++DE 
Sbjct:  602 MGNYQEHLKRLPPPLKEIETPPVRQHMFGNPFKIDKRMMVDEA 644          
BLAST of EMLSAG00000003170 vs. Select Arthropod Genomes
Match: gb|EFA02055.1| (Integrator complex subunit 6-A-like Protein [Tribolium castaneum])

HSP 1 Score: 54.299 bits (129), Expect = 8.442e-10
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ++LKR    LRE+E  P+RQH  GNPFKI+K +++DE   + V
Sbjct:  600 MGNYQEYLKRQTPQLREIESAPVRQHMFGNPFKIDKRMMVDEADIDLV 647          
BLAST of EMLSAG00000003170 vs. Select Arthropod Genomes
Match: gb|KPM05515.1| (integrator complex subunit 6-A-like protein [Sarcoptes scabiei])

HSP 1 Score: 48.9062 bits (115), Expect = 6.350e-8
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINK-TIILDEV 43
            M NYQ++LKR   PLRE+E  P R    GNPFKINK  +++DE 
Sbjct:  598 MGNYQEYLKRKQNPLREIEAQPTRTQLFGNPFKINKGNVMIDEA 641          
BLAST of EMLSAG00000003170 vs. Select Arthropod Genomes
Match: EAU77196.3 (AGAP000631-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 45.8246 bits (107), Expect = 8.744e-7
Identity = 19/40 (47.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIIL 40
            M NYQ++LK    PLRE+E   +RQH  GNP+K +K +++
Sbjct:  588 MGNYQEYLKNKETPLRELEPTNVRQHMFGNPYKKDKNMVM 627          
BLAST of EMLSAG00000003170 vs. Select Arthropod Genomes
Match: AGB95107.1 (integrator 6, isoform E [Drosophila melanogaster])

HSP 1 Score: 45.8246 bits (107), Expect = 8.829e-7
Identity = 19/40 (47.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIIL 40
            M NYQ++LK    PLRE+E   +RQH  GNP+K +K +++
Sbjct:  606 MGNYQEYLKNKDNPLREIEPTNVRQHMFGNPYKKDKHMVM 645          
BLAST of EMLSAG00000003170 vs. Select Arthropod Genomes
Match: AGB95106.1 (integrator 6, isoform D [Drosophila melanogaster])

HSP 1 Score: 45.8246 bits (107), Expect = 8.829e-7
Identity = 19/40 (47.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIIL 40
            M NYQ++LK    PLRE+E   +RQH  GNP+K +K +++
Sbjct:  606 MGNYQEYLKNKDNPLREIEPTNVRQHMFGNPYKKDKHMVM 645          
BLAST of EMLSAG00000003170 vs. Select Arthropod Genomes
Match: AGB95105.1 (integrator 6, isoform C [Drosophila melanogaster])

HSP 1 Score: 45.8246 bits (107), Expect = 8.829e-7
Identity = 19/40 (47.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIIL 40
            M NYQ++LK    PLRE+E   +RQH  GNP+K +K +++
Sbjct:  606 MGNYQEYLKNKDNPLREIEPTNVRQHMFGNPYKKDKHMVM 645          
BLAST of EMLSAG00000003170 vs. nr
Match: gi|1061488730|gb|ODN05774.1| (Integrator complex subunit 6-A [Orchesella cincta])

HSP 1 Score: 65.855 bits (159), Expect = 3.150e-11
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEV 43
            M NYQ++LKRMP PLRE+E  P+RQH  GNPFKI+K +I+DE 
Sbjct:  543 MGNYQEYLKRMPTPLREIESAPVRQHMFGNPFKIDKRMIIDEA 585          
BLAST of EMLSAG00000003170 vs. nr
Match: gi|1058138492|gb|JAS72894.1| (hypothetical protein g.28196 [Homalodisca liturata])

HSP 1 Score: 65.0846 bits (157), Expect = 7.297e-11
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ++LKRMP PLREVE  P+RQH  GNPFKI+K +++DE   + V
Sbjct:  650 MGNYQEYLKRMPSPLREVESTPVRQHMFGNPFKIDKRMMVDEADIDLV 697          
BLAST of EMLSAG00000003170 vs. nr
Match: gi|1058219836|gb|JAT13434.1| (hypothetical protein g.7125, partial [Graphocephala atropunctata])

HSP 1 Score: 64.6994 bits (156), Expect = 9.553e-11
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ++LKRMP PLREVE  P+RQH  GNPFKI+K +++DE   + V
Sbjct:  404 MGNYQEYLKRMPSPLREVESTPVRQHMFGNPFKIDKRMMVDEADIDLV 451          
BLAST of EMLSAG00000003170 vs. nr
Match: gi|1058080058|gb|JAS43690.1| (hypothetical protein g.8924, partial [Cuerna arida])

HSP 1 Score: 64.3142 bits (155), Expect = 1.094e-10
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ++LKRMP PLREVE  P+RQH  GNPFKI+K +++DE   + V
Sbjct:  383 MGNYQEYLKRMPSPLREVESTPVRQHMFGNPFKIDKRMMVDEADIDLV 430          
BLAST of EMLSAG00000003170 vs. nr
Match: gi|926613333|ref|XP_013771674.1| (PREDICTED: integrator complex subunit 6-like [Limulus polyphemus])

HSP 1 Score: 64.3142 bits (155), Expect = 1.154e-10
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ++LKRMP PLRE+E  P+RQH  GNPFKI K +++DE   + V
Sbjct:  617 MGNYQEYLKRMPTPLREIESTPVRQHMFGNPFKIEKRMMVDEADIDLV 664          
BLAST of EMLSAG00000003170 vs. nr
Match: gi|1073708711|gb|JAT97412.1| (putative dead box rna helicase, partial [Amblyomma aureolatum])

HSP 1 Score: 63.929 bits (154), Expect = 1.410e-10
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDE 42
            M NYQ++LKRMP PLRE+E  P+RQH  GNPFKI K +++DE
Sbjct:  453 MGNYQEYLKRMPTPLREIESTPVRQHMFGNPFKIEKRMMVDE 494          
BLAST of EMLSAG00000003170 vs. nr
Match: gi|443728925|gb|ELU15043.1| (hypothetical protein CAPTEDRAFT_170208 [Capitella teleta])

HSP 1 Score: 63.929 bits (154), Expect = 1.674e-10
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEV 43
            M NYQ++LK+MP PLRE+E  P RQH  GNPFK+NK +++DE 
Sbjct:  304 MGNYQEYLKKMPAPLREIETAPARQHTFGNPFKVNKNLMIDET 346          
BLAST of EMLSAG00000003170 vs. nr
Match: gi|926626601|ref|XP_013778844.1| (PREDICTED: integrator complex subunit 6-A-like [Limulus polyphemus])

HSP 1 Score: 63.929 bits (154), Expect = 1.738e-10
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEVFHEFV 48
            M NYQ++LKRMP PLRE+E  P+RQH  GNPFKI K +++DE   + V
Sbjct:  592 MGNYQEYLKRMPTPLREIESAPVRQHMFGNPFKIEKRMMVDEADIDLV 639          
BLAST of EMLSAG00000003170 vs. nr
Match: gi|957841054|ref|XP_014670851.1| (PREDICTED: integrator complex subunit 6-B-like [Priapulus caudatus])

HSP 1 Score: 63.5438 bits (153), Expect = 2.244e-10
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDE 42
            M NYQD+LK MP PLREVE  P+R H  GNPFK+NK +++DE
Sbjct:  674 MGNYQDYLKHMPAPLREVEAVPVRTHMFGNPFKVNKAMMVDE 715          
BLAST of EMLSAG00000003170 vs. nr
Match: gi|662220602|ref|XP_008484445.1| (PREDICTED: integrator complex subunit 6-like, partial [Diaphorina citri])

HSP 1 Score: 62.7734 bits (151), Expect = 4.338e-10
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINKTIILDEV 43
            M NYQ++LKRM  PLREVE  P+RQH  GNPFKI+K +++DE 
Sbjct:  105 MGNYQEYLKRMAAPLREVESTPVRQHMFGNPFKIDKRMMVDEA 147          

HSP 2 Score: 56.9954 bits (136), Expect = 4.166e-8
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 0
Query:    1 MENYQDFLKRMPIPLREVEHNPIRQHKSGNPFKINK 36
            M NYQ++LKRM  PLREVE  P+RQH  GNPFKI+K
Sbjct:  321 MGNYQEYLKRMAAPLREVESTPVRQHMFGNPFKIDK 356          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003170 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 12
Match NameE-valueIdentityDescription
-8.013e-648.98symbol:ddx26b "DEAD/H (Asp-Glu-Ala-Asp/His) box po... [more]
-8.085e-645.10symbol:INTS6 "Integrator complex subunit 6" specie... [more]
-8.289e-646.94symbol:INTS6 "Uncharacterized protein" species:991... [more]
-8.604e-646.94symbol:INTS6 "Uncharacterized protein" species:982... [more]
-8.678e-646.94symbol:INTS6 "Uncharacterized protein" species:903... [more]
-8.786e-646.94symbol:INTS6 "Integrator complex subunit 6" specie... [more]
-8.939e-646.94symbol:INTS6 "Uncharacterized protein" species:961... [more]
-8.942e-646.94symbol:Ints6 "integrator complex subunit 6" specie... [more]
-9.405e-646.94symbol:INTS6 "cDNA FLJ45485 fis, clone BRTHA200266... [more]
-9.438e-646.94symbol:INTS6 "Integrator complex subunit 6" specie... [more]

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BLAST of EMLSAG00000003170 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 8
Match NameE-valueIdentityDescription
gi|592776723|gb|GAXK01177845.1|3.084e-1263.64TSA: Calanus finmarchicus comp14041_c7_seq5 transc... [more]
gi|592776726|gb|GAXK01177842.1|4.587e-1263.64TSA: Calanus finmarchicus comp14041_c7_seq2 transc... [more]
gi|592776717|gb|GAXK01177851.1|7.603e-463.64TSA: Calanus finmarchicus comp14041_c7_seq11 trans... [more]
gi|592776706|gb|GAXK01177862.1|1.006e-363.64TSA: Calanus finmarchicus comp14041_c9_seq11 trans... [more]
gi|592776722|gb|GAXK01177846.1|3.498e-363.64TSA: Calanus finmarchicus comp14041_c7_seq6 transc... [more]
gi|592776725|gb|GAXK01177843.1|4.026e-363.64TSA: Calanus finmarchicus comp14041_c7_seq3 transc... [more]
gi|592814388|gb|GAXK01140180.1|1.731e+037.50TSA: Calanus finmarchicus comp5574747_c0_seq1 tran... [more]
gi|592784777|gb|GAXK01169791.1|2.213e+043.48TSA: Calanus finmarchicus comp1184_c6_seq6 transcr... [more]
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BLAST of EMLSAG00000003170 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000031705.388e-38100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1769:1878... [more]
EMLSAP000000010539.762e-1766.67pep:novel supercontig:LSalAtl2s:LSalAtl2s1173:4373... [more]
EMLSAP000000084811.413e-1570.83pep:novel supercontig:LSalAtl2s:LSalAtl2s51:917098... [more]
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BLAST of EMLSAG00000003170 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
gi|126258172|sp|Q2TAF4.1|INT6A_XENLA2.676e-748.98RecName: Full=Integrator complex subunit 6-A; Shor... [more]
gi|82180065|sp|Q5U4W6.1|INT6B_XENLA5.530e-746.94RecName: Full=Integrator complex subunit 6-B; Shor... [more]
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BLAST of EMLSAG00000003170 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 12
Match NameE-valueIdentityDescription
XP_006564516.17.006e-1260.47PREDICTED: integrator complex subunit 6 isoform X1... [more]
XP_395179.27.356e-1260.47PREDICTED: integrator complex subunit 6 isoform X2... [more]
EFX73352.11.141e-1154.17hypothetical protein DAPPUDRAFT_188894 [Daphnia pu... [more]
EEB20415.16.769e-1158.14dice1/dead/H box polypeptide, putative [Pediculus ... [more]
gb|EFA02055.1|8.442e-1052.08Integrator complex subunit 6-A-like Protein [Tribo... [more]
gb|KPM05515.1|6.350e-854.55integrator complex subunit 6-A-like protein [Sarco... [more]
EAU77196.38.744e-747.50AGAP000631-PA [Anopheles gambiae str. PEST][more]
AGB95107.18.829e-747.50integrator 6, isoform E [Drosophila melanogaster][more]
AGB95106.18.829e-747.50integrator 6, isoform D [Drosophila melanogaster][more]
AGB95105.18.829e-747.50integrator 6, isoform C [Drosophila melanogaster][more]

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BLAST of EMLSAG00000003170 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25
Match NameE-valueIdentityDescription
gi|1061488730|gb|ODN05774.1|3.150e-1165.12Integrator complex subunit 6-A [Orchesella cincta][more]
gi|1058138492|gb|JAS72894.1|7.297e-1160.42hypothetical protein g.28196 [Homalodisca liturata... [more]
gi|1058219836|gb|JAT13434.1|9.553e-1160.42hypothetical protein g.7125, partial [Graphocephal... [more]
gi|1058080058|gb|JAS43690.1|1.094e-1060.42hypothetical protein g.8924, partial [Cuerna arida... [more]
gi|926613333|ref|XP_013771674.1|1.154e-1058.33PREDICTED: integrator complex subunit 6-like [Limu... [more]
gi|1073708711|gb|JAT97412.1|1.410e-1064.29putative dead box rna helicase, partial [Amblyomma... [more]
gi|443728925|gb|ELU15043.1|1.674e-1060.47hypothetical protein CAPTEDRAFT_170208 [Capitella ... [more]
gi|926626601|ref|XP_013778844.1|1.738e-1058.33PREDICTED: integrator complex subunit 6-A-like [Li... [more]
gi|957841054|ref|XP_014670851.1|2.244e-1064.29PREDICTED: integrator complex subunit 6-B-like [Pr... [more]
gi|662220602|ref|XP_008484445.1|4.338e-1062.79PREDICTED: integrator complex subunit 6-like, part... [more]

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BLAST of EMLSAG00000003170 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1769supercontigLSalAtl2s1769:18781..18963 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1769-processed-gene-0.4
Biotypeprotein_coding
EvidenceIEA
NoteIntegrator complex subunit 6-A
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003170 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003170EMLSAT00000003170-699017Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1769:18781..18963+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003170-685936 ID=EMLSAG00000003170-685936|Name=EMLSAG00000003170|organism=Lepeophtheirus salmonis|type=gene|length=183bp|location=Sequence derived from alignment at LSalAtl2s1769:18781..18963+ (Lepeophtheirus salmonis)
ATGGAAAATTATCAAGACTTTCTAAAACGTATGCCTATTCCACTTAGAGA AGTCGAACATAATCCAATTCGGCAACACAAGTCTGGAAATCCTTTTAAAA TAAACAAAACTATTATTTTAGATGAGGTATTTCATGAATTTGTTCCGAAC AGAATGGAACTTCTGTTCATTCAGGAAGAATAA
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