EMLSAG00000003270, EMLSAG00000003270-686036 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003270
Unique NameEMLSAG00000003270-686036
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003270 vs. GO
Match: - (symbol:PGBD1 "Uncharacterized protein" species:9913 "Bos taurus" [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003309 Pfam:PF02023 PROSITE:PS50804 SMART:SM00431 GO:GO:0005634 GO:GO:0003700 InterPro:IPR008916 SUPFAM:SSF47353 OMA:EDPTWEQ OrthoDB:EOG78WKR6 TreeFam:TF328011 EMBL:DAAA02055456 GeneTree:ENSGT00530000063278 Ensembl:ENSBTAT00000065782 Uniprot:G3N1T1)

HSP 1 Score: 44.2838 bits (103), Expect = 4.874e-4
Identity = 26/89 (29.21%), Postives = 44/89 (49.44%), Query Frame = 0 
Query:   37 IKYLRDFFDDTFLTYMVEQSNIYSRQINIYKPLQLTQAELQQCIATLLIMSLQKLCRIRNYWRSEFSAGKEIRGTFSRDRWGKIERYLH 125
            +++   FFDD     +V ++N Y+ Q N+   L++T  E++     LL+  L +  R   YW +  +    +R    RDR+  I  YLH
Sbjct:  410 VEFFELFFDDETFNLIVSETNNYASQKNVN--LEVTVQEVRCVFGVLLLSGLVRRPRRGMYWETSDADQNLVRDAIRRDRFELIFSYLH 496
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BLAST of EMLSAG00000003270 vs. C. finmarchicus
Match: gi|592869523|gb|GAXK01088039.1| (TSA: Calanus finmarchicus comp158331_c2_seq12 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 7.746e+0
Identity = 14/31 (45.16%), Postives = 18/31 (58.06%), Query Frame = 0 
Query:   48 FLTYMVEQSNIYSRQINIYKPLQLTQAELQQ 78
            F TYM+E+S I+   I  Y P+Q     LQQ
Sbjct:   57 FFTYMLERSRIHLVPIESYNPVQNISGFLQQ 149
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BLAST of EMLSAG00000003270 vs. L. salmonis peptides
Match: EMLSAP00000003270 (pep:novel supercontig:LSalAtl2s:LSalAtl2s179:550661:551832:1 gene:EMLSAG00000003270 transcript:EMLSAT00000003270 description:"maker-LSalAtl2s179-snap-gene-5.3")

HSP 1 Score: 442.58 bits (1137), Expect = 2.559e-159
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0 
Query:    1 SDEEFVEIDNANTELYVLCEDDNKGQLGDVVDVRTLIKYLRDFFDDTFLTYMVEQSNIYSRQINIYKPLQLTQAELQQCIATLLIMSLQKLCRIRNYWRSEFSAGKEIRGTFSRDRWGKIERYLHPQKKKIYSLGTVRINRVPGANEEKRGSYVELSSFSGKTELRRVKWFANRHVNIISTFASAEPISEVKRYIRKHKEFATGPCPSIMKT 212
            SDEEFVEIDNANTELYVLCEDDNKGQLGDVVDVRTLIKYLRDFFDDTFLTYMVEQSNIYSRQINIYKPLQLTQAELQQCIATLLIMSLQKLCRIRNYWRSEFSAGKEIRGTFSRDRWGKIERYLHPQKKKIYSLGTVRINRVPGANEEKRGSYVELSSFSGKTELRRVKWFANRHVNIISTFASAEPISEVKRYIRKHKEFATGPCPSIMKT
Sbjct:    1 SDEEFVEIDNANTELYVLCEDDNKGQLGDVVDVRTLIKYLRDFFDDTFLTYMVEQSNIYSRQINIYKPLQLTQAELQQCIATLLIMSLQKLCRIRNYWRSEFSAGKEIRGTFSRDRWGKIERYLHPQKKKIYSLGTVRINRVPGANEEKRGSYVELSSFSGKTELRRVKWFANRHVNIISTFASAEPISEVKRYIRKHKEFATGPCPSIMKT 212
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BLAST of EMLSAG00000003270 vs. L. salmonis peptides
Match: EMLSAP00000005218 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2767:5240:6197:-1 gene:EMLSAG00000005218 transcript:EMLSAT00000005218 description:"augustus_masked-LSalAtl2s2767-processed-gene-0.0")

HSP 1 Score: 77.411 bits (189), Expect = 1.877e-17
Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 0 
Query:   25 GQLGDVVDVRTLIKYLRDFFDDTFLTYMVEQSNIYSRQINIYKPLQLTQAELQQCIATLLIMSLQKLCRIRNYWRSEFSAGKEIRGTFSRDRWGKIERYLH 125
            G+L    +V+  I+Y  DFF    L ++V+Q+N+Y+   N  KPL+L   EL+Q I TLL MS+ KL   R YW +     + +   FSRD WG+I+  LH
Sbjct:  116 GELELSENVKRPIEYFEDFFSSDILLHIVDQTNLYALXENPNKPLKLNVNELEQFIGTLLAMSMVKLSNSRLYWSNNLQC-EMVTEAFSRDLWGQIKSNLH 215
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BLAST of EMLSAG00000003270 vs. L. salmonis peptides
Match: EMLSAP00000009599 (pep:novel supercontig:LSalAtl2s:LSalAtl2s617:19231:19536:-1 gene:EMLSAG00000009599 transcript:EMLSAT00000009599 description:"augustus_masked-LSalAtl2s617-processed-gene-0.1")

HSP 1 Score: 54.299 bits (129), Expect = 3.605e-10
Identity = 24/63 (38.10%), Postives = 40/63 (63.49%), Query Frame = 0 
Query:  150 RGSYVELSSFSGKTELRRVKWFANRHVNIISTFASAEPISEVKRYIRKHKEFATGPCPSIMKT 212
            RG++ +     G+TE+R VKW   + V ++STFAS +P    +R+ +K+K+    PC +I+KT
Sbjct:   15 RGAFNDARLIDGETEIRLVKWVDKKCVTLVSTFASTQPTQLCRRFDKKNKKNDEIPCLNIVKT 77
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BLAST of EMLSAG00000003270 vs. Select Arthropod Genomes
Match: gb|EEC01677.1| (conserved hypothetical protein, partial [Ixodes scapularis])

HSP 1 Score: 80.4925 bits (197), Expect = 3.212e-18
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 0 
Query:   19 CEDDNK-----GQLGDVVDVRTLIKYLRDFFDDTFLTYMVEQSNIYSRQINIYKPLQLTQAELQQCIATLLIMSLQKLCRIRNYWRSEFSAGKEIRGTFSRD 115
            C+++++     G L     VRT I+Y ++FFDD    Y+VEQSN+++ Q N  KPL LT+AEL+Q + T+  MS   L R R YW +E S    I  T SRD
Sbjct:   65 CQEEHQIPSWNGSLPQSESVRTPIEYFKEFFDDALFEYIVEQSNLFAIQKNPNKPLGLTRAELEQFLGTVTFMSFCSLPRTRLYWAAE-SRIPTIADTMSRD 165
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BLAST of EMLSAG00000003270 vs. Select Arthropod Genomes
Match: gb|KFM60110.1| (PiggyBac transposable element-derived protein 2, partial [Stegodyphus mimosarum])

HSP 1 Score: 60.8474 bits (146), Expect = 4.187e-10
Identity = 36/104 (34.62%), Postives = 52/104 (50.00%), Query Frame = 0 
Query:  117 WGKIERYLHPQKKKIYSLGTVRINRVPGANE--------EKRGSYVELSSFSGKTELRRVKWFANRHVNIISTFASAEPISEVKRYIRKHKEFATGPCPSIMKT 212
            +  I   ++ +KK I SLGT+R NR+P            + RG   E  +     EL  V W  N+ V ++STFA   P+SEV+R+ RK K      CP ++ T
Sbjct:   95 YNSIPLQVYLKKKGILSLGTIRRNRIPDCKLPTERELKLQVRGFITEFVAEYDGCELSNVLWKDNKSVTMLSTFAGTNPVSEVQRFDRKQKCHVKVNCPYVITT 198
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BLAST of EMLSAG00000003270 vs. nr
Match: gi|241034633|ref|XP_002406701.1| (conserved hypothetical protein [Ixodes scapularis] >gi|215492036|gb|EEC01677.1| conserved hypothetical protein, partial [Ixodes scapularis])

HSP 1 Score: 80.4925 bits (197), Expect = 1.572e-15
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 0 
Query:   19 CEDDNK-----GQLGDVVDVRTLIKYLRDFFDDTFLTYMVEQSNIYSRQINIYKPLQLTQAELQQCIATLLIMSLQKLCRIRNYWRSEFSAGKEIRGTFSRD 115
            C+++++     G L     VRT I+Y ++FFDD    Y+VEQSN+++ Q N  KPL LT+AEL+Q + T+  MS   L R R YW +E S    I  T SRD
Sbjct:   65 CQEEHQIPSWNGSLPQSESVRTPIEYFKEFFDDALFEYIVEQSNLFAIQKNPNKPLGLTRAELEQFLGTVTFMSFCSLPRTRLYWAAE-SRIPTIADTMSRD 165
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BLAST of EMLSAG00000003270 vs. nr
Match: gi|831539649|ref|XP_012724093.1| (PREDICTED: piggyBac transposable element-derived protein 2-like [Fundulus heteroclitus])

HSP 1 Score: 82.0333 bits (201), Expect = 1.209e-14
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 0 
Query:   24 KGQLGDVVDVRTLIKYLRDFFDDTFLTYMVEQSNIYSRQINIYKPLQLTQAELQQCIATLLIMSLQKLCRIRNYWRSEFSAGKEIRGTFSRDRWGKIERYLH 125
            +G L D  + R  ++Y RDFFD   L  + +QSN+Y  Q N    L+L Q EL+Q I T+L MS+  L R+R YW SE     ++    SRDR+ +I ++LH
Sbjct:   94 QGALSDADEPREPVQYFRDFFDADLLETVAQQSNLYCAQENANSALKLDQGELEQFIGTVLYMSVVHLPRLRMYWSSECRV-PQVADVMSRDRFEEITKFLH 194
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BLAST of EMLSAG00000003270 vs. nr
Match: gi|974088571|ref|XP_015242424.1| (PREDICTED: piggyBac transposable element-derived protein 2-like [Cyprinodon variegatus] >gi|974088573|ref|XP_015242425.1| PREDICTED: piggyBac transposable element-derived protein 2-like [Cyprinodon variegatus])

HSP 1 Score: 77.7962 bits (190), Expect = 3.202e-13
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 0 
Query:   24 KGQLGDVVDVRTLIKYLRDFFDDTFLTYMVEQSNIYSRQINIYKPLQLTQAELQQCIATLLIMSLQKLCRIRNYWRSEFSAGKEIRGTFSRDRWGKIERYLH 125
            +G L D  + R  ++Y RDFFD   L  + +QSN+Y  Q N    L+L Q+EL+Q I +++ MS+ +L R+R YW +E     ++    SRDR+ +I ++LH
Sbjct:   89 QGTLPDADETREPVQYFRDFFDAGLLETIAQQSNLYCAQENPNCALRLDQSELEQFIGSVIYMSVVRLPRLRMYWATECRV-PQVADVLSRDRFEEISKFLH 189
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BLAST of EMLSAG00000003270 vs. nr
Match: gi|432943322|ref|XP_004083158.1| (PREDICTED: piggyBac transposable element-derived protein 3-like [Oryzias latipes])

HSP 1 Score: 77.7962 bits (190), Expect = 3.934e-13
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 0 
Query:   27 LGDVVDVRTLIKYLRDFFDDTFLTYMVEQSNIYSRQINIYKPLQLTQAELQQCIATLLIMSLQKLCRIRNYWRSEFSAGKEIRGTFSRDRWGKIERYLH 125
            L D   VR+ I+Y R FFD+  L  +VEQSN+Y RQ N    L+L Q  L+Q I T + MS   L + R YW S     +++    SRDRW +I++++H
Sbjct:  107 LPDGESVRSPIEYFRHFFDEQLLDSIVEQSNVYCRQQNPNHDLRLDQTSLEQFIGTAVYMSFFHLPQSRMYWSSACRV-QQVADVLSRDRWEEIKQFIH 204
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BLAST of EMLSAG00000003270 vs. nr
Match: gi|992222525|ref|XP_015463543.1| (PREDICTED: piggyBac transposable element-derived protein 2-like [Astyanax mexicanus])

HSP 1 Score: 77.0258 bits (188), Expect = 6.672e-13
Identity = 42/102 (41.18%), Postives = 58/102 (56.86%), Query Frame = 0 
Query:   24 KGQLGDVVDVRTLIKYLRDFFDDTFLTYMVEQSNIYSRQINIYKPLQLTQAELQQCIATLLIMSLQKLCRIRNYWRSEFSAGKEIRGTFSRDRWGKIERYLH 125
            +G L D   +R  ++Y R FFD   LT +V QSN+YS Q N    L+L Q EL+Q I T+L MS+ +L R R YW S      ++     RDRW +I+  +H
Sbjct:    3 QGALPDNDSIRLPVEYFRQFFDTELLTLIVNQSNLYSTQENPNHALKLDQKELEQFIGTVLYMSVIRLPRSRIYW-SNACCVDQVADVMPRDRWEEIKHCIH 103

HSP 2 Score: 67.3958 bits (163), Expect = 1.167e-9
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 0 
Query:  115 DRW-GKIERYLHPQKKKIYSLGTVRINRVPGANEEK--------RGSYVELSSFSGKTELRRVKWFANRHVNIISTFASAEPISEVKRYIRKHKEFATGPCPSIM 210
            D W   +  ++   K+ I +LGTVR NR+   +  K        RG++ E  +     E+R VKWF NR V + STFASA+P+S  +R+ RK K   +  CPSI+
Sbjct:  223 DNWFSSLNLFVALAKRGIPALGTVRQNRLQDCSFSKDDTLKKKGRGTFEEQQAVIDSVEVRAVKWFDNRGVIVASTFASAQPVSFTERWDRKQKRKVSVQCPSII 327
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BLAST of EMLSAG00000003270 vs. nr
Match: gi|831563557|ref|XP_012732402.1| (PREDICTED: piggyBac transposable element-derived protein 2-like [Fundulus heteroclitus])

HSP 1 Score: 73.9442 bits (180), Expect = 2.831e-12
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0 
Query:  131 IYSLGTVRINRVPGAN--------EEKRGSYVELSSFSGKTELRRVKWFANRHVNIISTFASAEPISEVKRYIRKHKEFATGPCPSIMK 211
            I+S GTVR NR+PG N           RGS+ + +S  G+T L  VKW+ NR V+++S +  A P++EV R+  K K+    PCP++++
Sbjct:   33 IHSTGTVRSNRLPGVNLMCDAELKRAGRGSFEQKTSMVGETTLHAVKWYDNRSVSLLSNYIGAHPVTEVDRWDGKQKKIIKVPCPAVVR 121
[Close]
BLAST of EMLSAG00000003270 vs. nr
Match: gi|551491855|ref|XP_005797497.1| (PREDICTED: piggyBac transposable element-derived protein 2-like [Xiphophorus maculatus])

HSP 1 Score: 74.7146 bits (182), Expect = 3.639e-12
Identity = 37/102 (36.27%), Postives = 62/102 (60.78%), Query Frame = 0 
Query:   24 KGQLGDVVDVRTLIKYLRDFFDDTFLTYMVEQSNIYSRQINIYKPLQLTQAELQQCIATLLIMSLQKLCRIRNYWRSEFSAGKEIRGTFSRDRWGKIERYLH 125
            +G L D  ++R  ++Y RDFFD   L  + +QSN+Y  Q N    L+L  +EL+Q I T++ +S+  L R+R YW ++    +++    SRDR+ +I ++LH
Sbjct:   91 QGTLPDADEIREPVQYFRDFFDAELLETISQQSNLYCAQENPNSALKLDPSELEQFIGTVMYISVVHLPRLRMYWSNDCRI-RQVADVISRDRFDEITKFLH 191
[Close]
BLAST of EMLSAG00000003270 vs. nr
Match: gi|831544348|ref|XP_012725844.1| (PREDICTED: piggyBac transposable element-derived protein 3-like [Fundulus heteroclitus])

HSP 1 Score: 74.7146 bits (182), Expect = 3.695e-12
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 0 
Query:   25 GQLGDVVDVRTLIKYLRDFFDDTFLTYMVEQSNIYSRQ---INIYKPLQLTQAELQQCIATLLIMSLQKLCRIRNYWRSEFSAGKEIRGTFSRDRWGKIERYLH 125
            G L    + R  I+Y RDFFD   +  +V+QSN+Y  Q    N Y  L+L + EL+Q I TL+ MS+  L + R YW SE    +++    +R+RW KI+ ++H
Sbjct:  273 GSLPSAAETREPIQYFRDFFDADLMNTIVQQSNLYYTQESTHNRYSGLKLDRNELEQFIGTLVYMSVVHLPKSRMYWSSECRV-EQVADVMTRERWKKIKEFIH 375
[Close]
BLAST of EMLSAG00000003270 vs. nr
Match: gi|914554920|gb|KOB65098.1| (putative piggybac transposable element-derived, partial [Operophtera brumata])

HSP 1 Score: 73.559 bits (179), Expect = 7.049e-12
Identity = 43/183 (23.50%), Postives = 83/183 (45.36%), Query Frame = 0 
Query:   30 VVDVRTLIKYLRDFFDDTFLTYMVEQSNIYSRQINIYKPLQLTQAELQQCIATLLIMSLQKLCRIRNYWRSEFSAGKEIRGTFSRDRWGKIERYLHPQKKKIYSLGTVRINRVPGANEEKRGSYVELSSFSGKTELRRVKWFANRHVNIISTFASAEPISEVKRYIRKHKEFATGPCPSIMKT 212
            ++++ T +++ +  F D    ++ +++  Y+ +    KP+ LT+ E++Q +   L+MS+ +L   R+YW +                        HP+KK                    RG+ VE       T++    W+  R VN+ ST+  ++P+ EV+RY  K K++ + PCP  + T
Sbjct:   88 IMELETPLQFFKYLFTDEMFQHITQETLRYATEKRPEKPMNLTEKEIEQFVGICLMMSIIQLPTTRDYWSTVLG---------------------HPKKKG-------------------RGASVEKLITIDNTDISVTTWYDTRIVNVSSTYVGSKPMMEVRRYNNKEKDYQSVPCPKAVTT 230
[Close]
BLAST of EMLSAG00000003270 vs. nr
Match: gi|1110878581|ref|XP_005455800.3| (PREDICTED: piggyBac transposable element-derived protein 3 [Oreochromis niloticus])

HSP 1 Score: 73.9442 bits (180), Expect = 7.786e-12
Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 0 
Query:   22 DNKGQLGDVVDVRTLIKYLRDFFDDTFLTYMVEQSNIYSRQINIYKPLQLTQAELQQCIATLLIMSLQKLCRIRNYWRSEFSAGKEIRGTFSRDRWGKIERYLH 125
            D +GQL    D+ + ++Y R FF +  L  +VE+SN+Y+ Q +  KPL LT  EL+Q + T++ MSL  L   R +W ++ +   E+  T + +RW  I+R LH
Sbjct:   76 DWQGQLPKADDILSPLQYFRKFFSEDILQVIVEESNLYAIQCDPNKPLNLTTNELEQFLGTVVYMSLFGLPATRMFW-NKATRVSEVAETMTLNRWEAIKRSLH 178
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003270 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-4.874e-429.21symbol:PGBD1 "Uncharacterized protein" species:991... [more]
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BLAST of EMLSAG00000003270 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592869523|gb|GAXK01088039.1|7.746e+045.16TSA: Calanus finmarchicus comp158331_c2_seq12 tran... [more]
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BLAST of EMLSAG00000003270 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000032702.559e-159100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s179:55066... [more]
EMLSAP000000052181.877e-1740.59pep:novel supercontig:LSalAtl2s:LSalAtl2s2767:5240... [more]
EMLSAP000000095993.605e-1038.10pep:novel supercontig:LSalAtl2s:LSalAtl2s617:19231... [more]
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BLAST of EMLSAG00000003270 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003270 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 2
Match NameE-valueIdentityDescription
gb|EEC01677.1|3.212e-1843.14conserved hypothetical protein, partial [Ixodes sc... [more]
gb|KFM60110.1|4.187e-1034.62PiggyBac transposable element-derived protein 2, p... [more]
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BLAST of EMLSAG00000003270 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25
Match NameE-valueIdentityDescription
gi|241034633|ref|XP_002406701.1|1.572e-1543.14conserved hypothetical protein [Ixodes scapularis]... [more]
gi|831539649|ref|XP_012724093.1|1.209e-1441.18PREDICTED: piggyBac transposable element-derived p... [more]
gi|974088571|ref|XP_015242424.1|3.202e-1338.24PREDICTED: piggyBac transposable element-derived p... [more]
gi|432943322|ref|XP_004083158.1|3.934e-1341.41PREDICTED: piggyBac transposable element-derived p... [more]
gi|992222525|ref|XP_015463543.1|6.672e-1341.18PREDICTED: piggyBac transposable element-derived p... [more]
gi|831563557|ref|XP_012732402.1|2.831e-1239.33PREDICTED: piggyBac transposable element-derived p... [more]
gi|551491855|ref|XP_005797497.1|3.639e-1236.27PREDICTED: piggyBac transposable element-derived p... [more]
gi|831544348|ref|XP_012725844.1|3.695e-1238.46PREDICTED: piggyBac transposable element-derived p... [more]
gi|914554920|gb|KOB65098.1|7.049e-1223.50putative piggybac transposable element-derived, pa... [more]
gi|1110878581|ref|XP_005455800.3|7.786e-1237.50PREDICTED: piggyBac transposable element-derived p... [more]

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BLAST of EMLSAG00000003270 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s179supercontigLSalAtl2s179:550661..551832 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s179-snap-gene-5.3
Biotypeprotein_coding
EvidenceIEA
NotePREDICTED: piggyBac transposable element-derived protein 2-like [Fundulus heteroclitus]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003270 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003270EMLSAT00000003270-699117Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s179:550661..551832+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003270-686036 ID=EMLSAG00000003270-686036|Name=EMLSAG00000003270|organism=Lepeophtheirus salmonis|type=gene|length=1172bp|location=Sequence derived from alignment at LSalAtl2s179:550661..551832+ (Lepeophtheirus salmonis)
AGTGACGAGGAATTTGTGGAAATAGATAACGCGAACACTGAATTGTATGT
ACTATGCGAAGACGACAACGTTGATGAAGAAGAGTTCAAAATCCACTAAA
AAGAAGGATAGATCTACAATTCCATGGAAACTCATCAAAGATTACTCTGG
AAGATACATTCCAGAATAGAAAGGACAACTTGGAGATGTGGTCGATGTTC
GCACTCTGATCAAATACCTTCGAGATTTTTTTGATGATACTTTTCTCACT
TATATGGTGGAGCAAAGTAATATATATTCTAGACAAATCAACATATATAA
ACCATTACAGCTGACACAAGCAGAACTCCAGCAATGCATTGCAACACTCC
TGATCATGAGTCTTCAAAAGCTATGTAGAATAAGAAACTATTGGAGATCA
GAGTTTTCAGCTGGAAAGGAGATACGAGGAACTTTTTCTAGAGATAGATG
GGGGAAAATAGAAAGATATCTCCATCCAGTGAATAATGAAGAAATACCAT
CAAAGAATCAACCAGATTACGACAAGATTTTTAAAATTAGACCATTTGTT
TCTCATCTCCATATAAAGTTTCGAAATTTTGAGAAGGATCAAATGCTTTG
TGAGGATGAATAAATGGTTCCGTTCAAAGGACGACATGCCATGAAGCAGT
ACATTCCAAGTAAGCTGCATATATGAGGATTTAAATTATTTGCCTTGCTT
GGAACTCATGGTATCCAATATGATTTTGAAATTTATGATGAATCCATTCC
ACCAGTAAAGAGAGTACTTGACTTAGGAGTAAGCTCCAACATTGTCTAAA
GGTTTGCCAAGTCTTTACCAAGGGGACTAAATCATCTCTTGTATTTCGAT
AATTAGTTTAAATGTCTCCCTCATTTTAGAACTAGCAAAAGAAGAAAATA
TATTCTCTTGGAACTGTGAGAATCAATCGAGTTCCAGGTGTAGCATATAT
TCTACCATCTGACAAGGAGCTAATGAAGAAAAAAGAGGATCATATGTGGA
ATTATCTTCATTTTCAGGCAAAACAGAACTAAGGCGTGTAAAATGGTTTG
CCAATAGACATGTGAACATAATTTCCACCTTTGCTTCAGCTGAACCAATT
AGTGAAGTCAAGCGGTACATCAGAAAACACAAGGAGTTCGCAACTGGGCC
ATGCCCCTCCATCATGAAGACT
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