EMLSAG00000003563, EMLSAG00000003563-686329 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003563
Unique NameEMLSAG00000003563-686329
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003563 vs. GO
Match: - (symbol:AT2G16040 species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0008150 "biological_process" evidence=ND] InterPro:IPR008906 InterPro:IPR012337 Pfam:PF05699 EMBL:CP002685 GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC007134 InterPro:IPR025398 Pfam:PF14291 HOGENOM:HOG000239492 PIR:A84536 RefSeq:NP_179202.1 UniGene:At.52760 EnsemblPlants:AT2G16040.1 GeneID:816101 KEGG:ath:AT2G16040 TAIR:At2g16040 eggNOG:NOG321403 InParanoid:Q9XII3 OMA:HIRRANK Genevestigator:Q9XII3 Uniprot:Q9XII3)

HSP 1 Score: 43.1282 bits (100), Expect = 2.023e-4
Identity = 21/53 (39.62%), Postives = 33/53 (62.26%), Query Frame = 0 
Query:    2 SSPSQNEMTDILGTELQRMIINEINAAGMLRISGDTTLDLSRYDQMTFVARYV 54
            S  SQNE+T++L  + + MI+ +I  A    +  D+  D+SR +QMTF+ R V
Sbjct:   27 SHKSQNELTELLANDTKMMILKKIKDAKYFSVILDSIPDVSRKEQMTFLIRCV 79
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BLAST of EMLSAG00000003563 vs. L. salmonis peptides
Match: EMLSAP00000003563 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1958:7804:8282:1 gene:EMLSAG00000003563 transcript:EMLSAT00000003563 description:"maker-LSalAtl2s1958-snap-gene-0.3")

HSP 1 Score: 266.929 bits (681), Expect = 7.882e-93
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 
Query:    1 MSSPSQNEMTDILGTELQRMIINEINAAGMLRISGDTTLDLSRYDQMTFVARYVKNMTPMEHTNKIVSQLYNIPAPMPGQYNRVKQKLKEFIERNGLYIPSQSHQRNTVVGYGYNASKLINSMFKILNS 129
            MSSPSQNEMTDILGTELQRMIINEINAAGMLRISGDTTLDLSRYDQMTFVARYVKNMTPMEHTNKIVSQLYNIPAPMPGQYNRVKQKLKEFIERNGLYIPSQSHQRNTVVGYGYNASKLINSMFKILNS
Sbjct:    1 MSSPSQNEMTDILGTELQRMIINEINAAGMLRISGDTTLDLSRYDQMTFVARYVKNMTPMEHTNKIVSQLYNIPAPMPGQYNRVKQKLKEFIERNGLYIPSQSHQRNTVVGYGYNASKLINSMFKILNS 129
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BLAST of EMLSAG00000003563 vs. L. salmonis peptides
Match: EMLSAP00000003467 (pep:novel supercontig:LSalAtl2s:LSalAtl2s18:1283183:1284677:1 gene:EMLSAG00000003467 transcript:EMLSAT00000003467 description:"snap_masked-LSalAtl2s18-processed-gene-12.2")

HSP 1 Score: 56.225 bits (134), Expect = 4.385e-11
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 0 
Query:   20 MIINEINAAGMLRISGDTTLDLSRYDQMTFVARYVKNMTPME 61
            MI NEINA GML+I   TT DLS Y+QMT VARY K+MTP E
Sbjct:    1 MIANEINAFGMLKIYPYTTPDLSCYNQMTVVARYEKDMTPYE 42
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BLAST of EMLSAG00000003563 vs. nr
Match: gi|449681612|ref|XP_004209871.1| (PREDICTED: uncharacterized protein LOC101240176 [Hydra vulgaris])

HSP 1 Score: 79.7221 bits (195), Expect = 6.578e-16
Identity = 49/155 (31.61%), Postives = 74/155 (47.74%), Query Frame = 0 
Query:    5 SQNEMTDILGTELQRMIINEINAAGMLRISGDTTLDLSRYDQMTFVARYVKN-------------------MTPMEHTNKIVS-----------QLYNIPAPMPGQYNRVKQKLKEFIERNGLYIPSQSHQRNTVVGYGYNASKLINSMFKILNS 129
            SQNE+ +ILG+E+++ II EI  A +  +  DTT D+S  DQ     RYV N                   +   EH  K+++           Q Y+  + M G  N  + +L + +    LYIP Q+H+ NT + +G NAS ++ SM   L S
Sbjct:   13 SQNELIEILGSEVKKFIIKEIEEASLFSLMADTTPDVSHKDQSAVCVRYVNNKRKAVERLLELKEEVDKTGLGTTEHIFKVLNKNVINTENLAFQSYDFASNMSGVVNGAQAQLSQLVGHKDLYIPCQAHRINTFLEHGCNASIVVLSMIDNLES 167
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BLAST of EMLSAG00000003563 vs. nr
Match: gi|449667456|ref|XP_004206567.1| (PREDICTED: zinc finger MYM-type protein 1-like [Hydra vulgaris])

HSP 1 Score: 76.6406 bits (187), Expect = 7.238e-14
Identity = 45/157 (28.66%), Postives = 74/157 (47.13%), Query Frame = 0 
Query:    1 MSSPSQNEMTDILGTELQRMIINEINAAGMLRISGDTTLDLSRYDQMTFVARYVKNMTPMEH------------------------------TNKIVSQLYNIPAPMPGQYNRVKQKLKEFIERNGLYIPSQSHQRNTVVGYGYNASKLINSMFKIL 127
            MS+ SQN+   +LG ++Q  I++E+N A M  I  DTT D+S  D++ F  RYV N   ++                                N +V Q Y+  + M      V  K+ E ++R   YIP Q+H+ NT V +    +K+ +++F++L
Sbjct:  207 MSAKSQNDFIHLLGQDVQSKIVSEVNQASMFSIMADTTPDVSHSDKLAFAVRYVDNYCNIKERIVQICEVADKTGDGIADLIISIINNLQLDVNSVVFQGYDYASSMSSNIKGVHAKISEKLKRVVPYIPCQAHRTNTFVEHAVKRNKMASNVFEVL 363
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BLAST of EMLSAG00000003563 vs. nr
Match: gi|828204895|ref|XP_012556432.1| (PREDICTED: zinc finger MYM-type protein 1-like [Hydra vulgaris])

HSP 1 Score: 70.8626 bits (172), Expect = 7.435e-12
Identity = 44/157 (28.03%), Postives = 73/157 (46.50%), Query Frame = 0 
Query:    1 MSSPSQNEMTDILGTELQRMIINEINAAGMLRISGDTTLDLSRYDQMTFVARYVKNMTPMEH------------------------------TNKIVSQLYNIPAPMPGQYNRVKQKLKEFIERNGLYIPSQSHQRNTVVGYGYNASKLINSMFKIL 127
            MS+ SQN+   +LG ++Q  I++E+N A M  I  DTT D+S  D++    RYV N   ++                                N +V Q Y+  + M      V  K+ E ++R   YIP Q+H+ NT V +    +K+ +++F++L
Sbjct:  207 MSAKSQNDFIHLLGQDVQSKIVSEVNQASMFLIMADTTPDVSHSDKLAIAVRYVNNKCNIKERIVQICEVANKTGDGIADLIISTINNLQLDVNSVVLQGYDYASSMSSNIKGVHAKISEKLKRVLPYIPCQAHRTNTFVEHAVKRNKMASNVFEVL 363
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BLAST of EMLSAG00000003563 vs. nr
Match: gi|1028671958|ref|XP_016655742.1| (PREDICTED: zinc finger MYM-type protein 1-like [Acyrthosiphon pisum])

HSP 1 Score: 70.8626 bits (172), Expect = 8.312e-12
Identity = 47/157 (29.94%), Postives = 74/157 (47.13%), Query Frame = 0 
Query:    1 MSSPSQNEMTDILGTELQRMIINEINAAGMLRISGDTTLDLSRYDQMTFVARYVKNMTPMEH-------------------------TN-----KIVSQLYNIPAPMPGQYNRVKQKLKEFIERNGLYIPSQSHQRNTVVGYGYNASKLINSMFKIL 127
            MS  SQNE  +ILG+ ++  I  ++N A    +  DTT DLS  D ++ V R+V +    E                          TN      +V Q Y+    M GQ+N  +QK+ E I R   YIP ++H+ NT + +  ++S +I+ +F I+
Sbjct:  439 MSPKSQNEFINILGSSIKSNISKKVNDARQFAVMADTTPDLSHKDILSVVVRFVNDKGKPEERLLEVREIVDKTGKGMANEILETLRTNNLDLQNLVFQSYDFANNMSGQFNGAQQKISEAIGRKIPYIPCKAHRINTFIEHACDSSLIISDLFSII 595
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BLAST of EMLSAG00000003563 vs. nr
Match: gi|828233265|ref|XP_012565725.1| (PREDICTED: 52 kDa repressor of the inhibitor of the protein kinase-like [Hydra vulgaris])

HSP 1 Score: 70.0922 bits (170), Expect = 1.422e-11
Identity = 46/157 (29.30%), Postives = 72/157 (45.86%), Query Frame = 0 
Query:    1 MSSPSQNEMTDILGTELQRMIINEINAAGMLRISGDTTLDLSRYDQMTFVARYV-KNMTPMEH-----------------------------TNKIVSQLYNIPAPMPGQYNRVKQKLKEFIERNGLYIPSQSHQRNTVVGYGYNASKLINSMFKIL 127
            MS+ SQN+   +LG ++Q  I++E+N A M  I  DTT D+S  D++    RYV KN    E                               N  V Q Y+  + M      V  K+ E ++R   YIP Q+H+ NT V +    +K+ +++F++L
Sbjct:  124 MSAKSQNDFIHLLGQDVQSKIVSEVNQASMFSIMADTTPDVSHSDKLAIAVRYVDKNCNIKERIVQICEVADKTGDGIANLIISTINNLQLDVNSDVFQGYDYASSMSSNIKGVHAKISEKLKRVVPYIPCQAHRTNTFVEHAVKRNKMASNVFEVL 280
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BLAST of EMLSAG00000003563 vs. nr
Match: gi|1028670013|ref|XP_016664723.1| (PREDICTED: zinc finger MYM-type protein 1-like [Acyrthosiphon pisum])

HSP 1 Score: 67.3958 bits (163), Expect = 6.432e-11
Identity = 38/114 (33.33%), Postives = 64/114 (56.14%), Query Frame = 0 
Query:    7 NEMTDILGTELQRMIINEINAAGMLRISGDTTLDLSRYDQMTFVARYV--KNMTPMEHTNKIVSQLYNIPAPMPGQYNRVKQKLKEFIERN-GLYIPSQSHQRNTVVGYGYNAS 117
            N++ D +   + + I+ E+N A +  IS DTT D+SR++Q++FV RY      T ++  N +  Q Y+  A M G+YN ++ K+K   E N  +YI   +H+ N +V  G  + 
Sbjct:  108 NQLIDSISNSILKSIVQEVNTARIFSISIDTTFDISRHEQVSFVIRYTYEAKKTNIDWKNNLKGQSYDGAANMRGKYNGLQAKIKS--ENNQAIYIWCWAHRLNLIVEQGVKSC 219
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BLAST of EMLSAG00000003563 vs. nr
Match: gi|985419476|ref|XP_015375253.1| (PREDICTED: uncharacterized protein LOC107169842 [Diuraphis noxia])

HSP 1 Score: 66.6254 bits (161), Expect = 2.777e-10
Identity = 42/159 (26.42%), Postives = 72/159 (45.28%), Query Frame = 0 
Query:    1 MSSPSQNEMTDILGTELQRMIINEINAAGMLRISGDTTLDLSRYDQMTFVARYVKNMTPMEH------------------------------TNKIVSQLYNIPAPMPGQYNRVKQKLKEFIERNGLYIPSQSHQRNTVVGYGYNASKLINSMFKILNS 129
            +S  SQNE   +L  ++++ II ++  AG+  +  DTT D+SR DQ++   RY+ ++  +                                 + I  Q Y+  + M G+ N  +QKL E       +IP Q+H+ NT + +  +AS LI  +F  L +
Sbjct:  343 LSHDSQNEFIKLLADDVKKTIIKDVTHAGIYSVMADTTPDISRSDQLSVCVRYIDSLGDVSERLLDVCQAKDKTGLGVAEKIYEVLVENSLPVDNIAFQSYDYASSMSGRINGTQQKLSELAGHMIPFIPCQAHRLNTFLEHSCDASILICDLFSTLEN 501
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BLAST of EMLSAG00000003563 vs. nr
Match: gi|641680537|ref|XP_008189066.1| (PREDICTED: uncharacterized protein LOC103311262 [Acyrthosiphon pisum])

HSP 1 Score: 66.2402 bits (160), Expect = 3.776e-10
Identity = 42/150 (28.00%), Postives = 70/150 (46.67%), Query Frame = 0 
Query:    1 MSSPSQNEMTDILGTELQRMIINEINAAGMLRISGDTTLDLSRYDQMTFVARYVKN--------MTPMEHTNK----------------------IVSQLYNIPAPMPGQYNRVKQKLKEFIERNGLYIPSQSHQRNTVVGYGYNASKLI 120
            + S SQNE  ++L +E +  +I E+  A +  +  DTT D++  D++    RYV N        +   E TNK                      I  Q Y+  + M GQ++  +++L +    +  YIP Q+H+ NT + +G NAS +I
Sbjct:  379 LGSRSQNEFIELLSSETRNRVIEEVKNAEIYSVLADTTPDITHQDRLAICVRYVNNNGNVKERLLEINECTNKTGFGIANNIYDTLVRNELNPDFIAFQSYDFASSMSGQFHGAQKELSKLANHHIPYIPCQAHRINTFLEHGCNASVII 528
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BLAST of EMLSAG00000003563 vs. nr
Match: gi|641651939|ref|XP_008178186.1| (PREDICTED: uncharacterized protein LOC103307722 [Acyrthosiphon pisum])

HSP 1 Score: 60.8474 bits (146), Expect = 2.777e-8
Identity = 41/157 (26.11%), Postives = 68/157 (43.31%), Query Frame = 0 
Query:    1 MSSPSQNEMTDILGTELQRMIINEINAAGMLRISGDTTLDLSRYDQMTFVARYVKN--------MTPMEHTNK----------------------IVSQLYNIPAPMPGQYNRVKQKLKEFIERNGLYIPSQSHQRNTVVGYGYNASKLINSMFKIL 127
            + S SQNE  ++L  E ++ II EI  + +  +  DTT D+S  DQ+    RYV          +  +E T+K                      +  Q Y+  + M G     +    EF+  +  YIP Q+H+ NT + +  +AS +I  +  +L
Sbjct:  127 LGSKSQNEFIELLAAENRQTIIQEIQNSELFAVMADTTPDISMKDQLAVCLRYVDQKGITNERLLDVVESTDKTGYGTAKSIYNCLIKYEINTDNVAFQSYDYASNMSGINKGAQHFFTEFVSHSVPYIPCQAHRMNTFLEHSCDASPIIGDLICVL 283
[Close]
BLAST of EMLSAG00000003563 vs. nr
Match: gi|985425547|ref|XP_015378242.1| (PREDICTED: zinc finger MYM-type protein 1-like, partial [Diuraphis noxia])

HSP 1 Score: 59.6918 bits (143), Expect = 5.574e-8
Identity = 41/159 (25.79%), Postives = 70/159 (44.03%), Query Frame = 0 
Query:    1 MSSPSQNEMTDILGTELQRMIINEINAAGMLRISGDTTLDLSRYDQMTFVARYVKN--------MTPMEHTNK----------------------IVSQLYNIPAPMPGQYNRVKQKLKEFIERNGLYIPSQSHQRNTVVGYGYNASKLINSMFKILNS 129
            +S  SQNE  ++L  E  + I+ E++ + +  +  DTT D++  DQ++   RYV          +  +E T+K                      +  Q Y+  + M G    V++   EF+     YIP Q+H+ N  + +G  AS +I +   IL S
Sbjct:  300 LSMKSQNEFIELLAAETLKNIVEEVSTSDIFSVLADTTPDVALKDQLSVCLRYVDQGGSPNERLLDVIEVTDKTGYGLAKSIYDILIKHGLNTGNVSFQSYDYASSMIGVNKGVQRYFSEFVGHTVPYIPCQAHRINYFLEHGCKASHIIENFIDILES 458
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003563 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-2.023e-439.62symbol:AT2G16040 species:3702 "Arabidopsis thalian... [more]
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BLAST of EMLSAG00000003563 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003563 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000035637.882e-93100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1958:7804... [more]
EMLSAP000000034674.385e-1169.05pep:novel supercontig:LSalAtl2s:LSalAtl2s18:128318... [more]
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BLAST of EMLSAG00000003563 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003563 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003563 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 12
Match NameE-valueIdentityDescription
gi|449681612|ref|XP_004209871.1|6.578e-1631.61PREDICTED: uncharacterized protein LOC101240176 [H... [more]
gi|449667456|ref|XP_004206567.1|7.238e-1428.66PREDICTED: zinc finger MYM-type protein 1-like [Hy... [more]
gi|828204895|ref|XP_012556432.1|7.435e-1228.03PREDICTED: zinc finger MYM-type protein 1-like [Hy... [more]
gi|1028671958|ref|XP_016655742.1|8.312e-1229.94PREDICTED: zinc finger MYM-type protein 1-like [Ac... [more]
gi|828233265|ref|XP_012565725.1|1.422e-1129.30PREDICTED: 52 kDa repressor of the inhibitor of th... [more]
gi|1028670013|ref|XP_016664723.1|6.432e-1133.33PREDICTED: zinc finger MYM-type protein 1-like [Ac... [more]
gi|985419476|ref|XP_015375253.1|2.777e-1026.42PREDICTED: uncharacterized protein LOC107169842 [D... [more]
gi|641680537|ref|XP_008189066.1|3.776e-1028.00PREDICTED: uncharacterized protein LOC103311262 [A... [more]
gi|641651939|ref|XP_008178186.1|2.777e-826.11PREDICTED: uncharacterized protein LOC103307722 [A... [more]
gi|985425547|ref|XP_015378242.1|5.574e-825.79PREDICTED: zinc finger MYM-type protein 1-like, pa... [more]

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BLAST of EMLSAG00000003563 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1958supercontigLSalAtl2s1958:7804..8282 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1958-snap-gene-0.3
Biotypeprotein_coding
EvidenceIEA
NotePREDICTED: uncharacterized protein LOC101240176 [Hydra vulgaris]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003563 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003563EMLSAT00000003563-699410Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1958:7804..8282+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003563-686329 ID=EMLSAG00000003563-686329|Name=EMLSAG00000003563|organism=Lepeophtheirus salmonis|type=gene|length=479bp|location=Sequence derived from alignment at LSalAtl2s1958:7804..8282+ (Lepeophtheirus salmonis)
ATGTCAAGTCCATCCCAGAACGAGATGACAGACATCTTGGGTACTGAACT
ACAAAGGATGATTATAAACGAGATTAATGCAGCAGGAATGCTAAGAATAT
CTGGTGACACAACACTTGATCTATCTCGTTATGATCAGATGACTTTTGTG
GCGAGATACGTGAAAAATATGACACCTATGGAACGTTTGTTGGTTGTAAA
ATATGTGAAGATTTAAACTTGAGGAAGAATNCAGCCAAGGATGTTATTTC
AGWAATATCGAACAACCAACTAGATACAAACAAGATAGTTTCACAATTAT
ACAATATTCCTGCTCCCATGCCTGGCCAGTACAACAGAGTAAAGCAAAAA
CTGAAAGAATTTATAGAACGAAATGGGCTATACATCCCTAGTCAGAGTCA
CCAGAGGAACACTGTAGTTGGATATGGGTATAATGCTAGTAAACTAATAA
ATTCCATGTTTAAAATATTAAATTCTTAA
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