EMLSAG00000003903, EMLSAG00000003903-686669 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003903
Unique NameEMLSAG00000003903-686669
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000003903 vs. GO
Match: - (symbol:si:ch73-382f3.1 "si:ch73-382f3.1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006612 Pfam:PF05485 PROSITE:PS50950 SMART:SM00692 SMART:SM00980 ZFIN:ZDB-GENE-030131-9513 GO:GO:0003676 TreeFam:TF330127 EMBL:CU571172 Ensembl:ENSDART00000134976 GeneTree:ENSGT00510000053848 OMA:KQLFRFP OrthoDB:EOG7SN8BV Bgee:E9QCV3 InterPro:IPR021896 Pfam:PF12017 Uniprot:E9QCV3)

HSP 1 Score: 44.669 bits (104), Expect = 2.053e-5
Identity = 18/37 (48.65%), Postives = 27/37 (72.97%), Query Frame = 0 
Query:   24 RCPKNPVLLKRWIVNCRWQDWKQTKWSRVCFKHFNDS 60
            R PK+PV +++W+VNCR +D+  T  SR+C  HF +S
Sbjct:   21 RFPKDPVRMRKWLVNCR-RDFVPTPCSRLCQDHFEES 56
[Close]
BLAST of EMLSAG00000003903 vs. GO
Match: - (symbol:zgc:163143 "zgc:163143" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008150 "biological_process" evidence=ND] [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR006612 InterPro:IPR012337 Pfam:PF05485 PROSITE:PS50950 SMART:SM00692 SMART:SM00980 ZFIN:ZDB-GENE-070410-143 GO:GO:0003676 SUPFAM:SSF53098 GeneTree:ENSGT00740000115568 TreeFam:TF330127 EMBL:CR339049 EMBL:CR387987 Ensembl:ENSDART00000113036 OMA:FFHGDYC OrthoDB:EOG7FXZZQ Bgee:F1QD19 Uniprot:F1QD19)

HSP 1 Score: 43.1282 bits (100), Expect = 9.666e-5
Identity = 16/33 (48.48%), Postives = 23/33 (69.70%), Query Frame = 0 
Query:   27 KNPVLLKRWIVNCRWQDWKQTKWSRVCFKHFND 59
            K+P LLK+W+ N RW+DWK    S++C  HF +
Sbjct:   27 KDPSLLKKWLKNLRWKDWKPNPNSKICSAHFEE 59
[Close]
BLAST of EMLSAG00000003903 vs. C. finmarchicus
Match: gi|592813348|gb|GAXK01141220.1| (TSA: Calanus finmarchicus comp5778707_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 8.040e-1
Identity = 13/34 (38.24%), Postives = 18/34 (52.94%), Query Frame = 0 
Query:   40 RWQDWKQTKWSRVCFKHFNDSDIIKHKVKGTLVS 73
            R  D  +  +S +C KHFN  D+I H     +VS
Sbjct:  312 RVPDKNRETYSLICEKHFNPEDVIDHGDGRRIVS 413
[Close]
BLAST of EMLSAG00000003903 vs. C. finmarchicus
Match: gi|592908801|gb|GAXK01049574.1| (TSA: Calanus finmarchicus comp5869326_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 1.809e+0
Identity = 8/16 (50.00%), Postives = 15/16 (93.75%), Query Frame = 0 
Query:   26 PKNPVLLKRWIVNCRW 41
            P+ PV+L++W+V+CR+
Sbjct:  318 PEMPVVLEKWLVHCRY 365
[Close]
BLAST of EMLSAG00000003903 vs. C. finmarchicus
Match: gi|592829252|gb|GAXK01128292.1| (TSA: Calanus finmarchicus comp405836_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.604e+0
Identity = 13/22 (59.09%), Postives = 13/22 (59.09%), Query Frame = 0 
Query:   53 CFKHFNDSDIIKHKVKGTLVSF 74
            CFK F   D I HKV G L SF
Sbjct:  568 CFKGFRVGDQISHKVPGRLGSF 633
[Close]
BLAST of EMLSAG00000003903 vs. C. finmarchicus
Match: gi|592807590|gb|GAXK01146978.1| (TSA: Calanus finmarchicus comp2781160_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.634e+0
Identity = 11/25 (44.00%), Postives = 14/25 (56.00%), Query Frame = 0 
Query:   39 CR--WQDWKQTKWSRVCFKHFNDSD 61
            CR  +Q+W Q KW  +C     DSD
Sbjct:  445 CRRPYQNWTQAKWQNMCIDRIYDSD 519
[Close]
BLAST of EMLSAG00000003903 vs. C. finmarchicus
Match: gi|592807591|gb|GAXK01146977.1| (TSA: Calanus finmarchicus comp2781160_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.710e+0
Identity = 11/25 (44.00%), Postives = 14/25 (56.00%), Query Frame = 0 
Query:   39 CR--WQDWKQTKWSRVCFKHFNDSD 61
            CR  +Q+W Q KW  +C     DSD
Sbjct:  445 CRRPYQNWTQAKWQNMCIDRIYDSD 519
[Close]
BLAST of EMLSAG00000003903 vs. C. finmarchicus
Match: gi|592852522|gb|GAXK01105022.1| (TSA: Calanus finmarchicus comp157664_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.258e+0
Identity = 13/35 (37.14%), Postives = 18/35 (51.43%), Query Frame = 0 
Query:   25 CPKNPVLLKRWIVNCRWQDWKQTKWSRVCFKHFND 59
            C   PV L+  +   RW +   T+  R CF HFN+
Sbjct:   40 CQPTPVSLRTLLSPARW-NLSLTRCLRTCFTHFNN 141
[Close]
BLAST of EMLSAG00000003903 vs. C. finmarchicus
Match: gi|592945696|gb|GAXK01012857.1| (TSA: Calanus finmarchicus comp2991107_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.588e+0
Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = 0 
Query:   44 WKQTKWSRVCFKHFNDSDII 63
            W+ T+WSRVC K   D+D++
Sbjct:   75 WRMTRWSRVCLK---DADLV 125
[Close]
BLAST of EMLSAG00000003903 vs. L. salmonis peptides
Match: EMLSAP00000003903 (pep:novel supercontig:LSalAtl2s:LSalAtl2s210:70887:73106:1 gene:EMLSAG00000003903 transcript:EMLSAT00000003903 description:"snap-LSalAtl2s210-processed-gene-0.38")

HSP 1 Score: 153.295 bits (386), Expect = 9.217e-50
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 
Query:    1 MDVLMRMSSDKIAFSFLQKEFGIRCPKNPVLLKRWIVNCRWQDWKQTKWSRVCFKHFNDSDIIKHKVKGTLVSF 74
            MDVLMRMSSDKIAFSFLQKEFGIRCPKNPVLLKRWIVNCRWQDWKQTKWSRVCFKHFNDSDIIKHKVKGTLVSF
Sbjct:    1 MDVLMRMSSDKIAFSFLQKEFGIRCPKNPVLLKRWIVNCRWQDWKQTKWSRVCFKHFNDSDIIKHKVKGTLVSF 74
[Close]
BLAST of EMLSAG00000003903 vs. L. salmonis peptides
Match: EMLSAP00000007454 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4278:2558:3098:-1 gene:EMLSAG00000007454 transcript:EMLSAT00000007454 description:"augustus-LSalAtl2s4278-processed-gene-0.1")

HSP 1 Score: 87.0409 bits (214), Expect = 4.212e-23
Identity = 44/66 (66.67%), Postives = 48/66 (72.73%), Query Frame = 0 
Query:    7 MSSDKIAFSFLQKEFGIRCPKNPVLLKRWIVNCRWQDWKQTKWSRVCFKHFNDSDIIKHKVKGTLV 72
            +S +K+  SF         PKNP LLKRWIVNCR QDWK TKWSR+C KHF DSDIIKHKVK TLV
Sbjct:   34 LSRNKVKISFFP------FPKNPALLKRWIVNCRRQDWKPTKWSRICSKHFKDSDIIKHKVKCTLV 93
[Close]
BLAST of EMLSAG00000003903 vs. L. salmonis peptides
Match: EMLSAP00000001020 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:1964032:1966964:1 gene:EMLSAG00000001020 transcript:EMLSAT00000001020 description:"augustus-LSalAtl2s116-processed-gene-19.24")

HSP 1 Score: 65.855 bits (159), Expect = 6.202e-15
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 0 
Query:   26 PKNPVLLKRWIVNCRWQDWKQTKWSRVCFKHFNDSDIIKHKVKGTLV 72
            PK P L KRW++NCR ++W  +KWS++C KHF +SDIIKHKV+  LV
Sbjct:   74 PKRPELRKRWLLNCRRKNWTPSKWSKLCSKHFKESDIIKHKVRYHLV 120
[Close]
BLAST of EMLSAG00000003903 vs. L. salmonis peptides
Match: EMLSAP00000006575 (pep:novel supercontig:LSalAtl2s:LSalAtl2s35:814397:816004:1 gene:EMLSAG00000006575 transcript:EMLSAT00000006575 description:"snap-LSalAtl2s35-processed-gene-8.21")

HSP 1 Score: 55.8398 bits (133), Expect = 1.405e-11
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 0 
Query:   26 PKNPVLLKRWIVNCRWQDWKQTKWSRVCFKHFNDSDIIKHKVKGTLV 72
            PKNP L  RW++N R ++W  +KWSR+C K+F    II+HKVK +LV
Sbjct:    4 PKNPELHNRWLINWRRENWNPSKWSRICSKNFKKDLIIRHKVKCSLV 50
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003903 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 2
Match NameE-valueIdentityDescription
-2.053e-548.65symbol:si:ch73-382f3.1 "si:ch73-382f3.1" species:7... [more]
-9.666e-548.48symbol:zgc:163143 "zgc:163143" species:7955 "Danio... [more]
back to top
BLAST of EMLSAG00000003903 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 7
Match NameE-valueIdentityDescription
gi|592813348|gb|GAXK01141220.1|8.040e-138.24TSA: Calanus finmarchicus comp5778707_c0_seq1 tran... [more]
gi|592908801|gb|GAXK01049574.1|1.809e+050.00TSA: Calanus finmarchicus comp5869326_c0_seq1 tran... [more]
gi|592829252|gb|GAXK01128292.1|4.604e+059.09TSA: Calanus finmarchicus comp405836_c0_seq1 trans... [more]
gi|592807590|gb|GAXK01146978.1|5.634e+044.00TSA: Calanus finmarchicus comp2781160_c0_seq2 tran... [more]
gi|592807591|gb|GAXK01146977.1|5.710e+044.00TSA: Calanus finmarchicus comp2781160_c0_seq1 tran... [more]
gi|592852522|gb|GAXK01105022.1|6.258e+037.14TSA: Calanus finmarchicus comp157664_c1_seq1 trans... [more]
gi|592945696|gb|GAXK01012857.1|7.588e+050.00TSA: Calanus finmarchicus comp2991107_c0_seq1 tran... [more]
back to top
BLAST of EMLSAG00000003903 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000039039.217e-50100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s210:70887... [more]
EMLSAP000000074544.212e-2366.67pep:novel supercontig:LSalAtl2s:LSalAtl2s4278:2558... [more]
EMLSAP000000010206.202e-1559.57pep:novel supercontig:LSalAtl2s:LSalAtl2s116:19640... [more]
EMLSAP000000065751.405e-1153.19pep:novel supercontig:LSalAtl2s:LSalAtl2s35:814397... [more]
back to top
BLAST of EMLSAG00000003903 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003903 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003903 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003903 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s210supercontigLSalAtl2s210:70887..73106 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s210-processed-gene-0.38
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003903 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003903EMLSAT00000003903-699750Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s210:70887..73106+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003903-686669 ID=EMLSAG00000003903-686669|Name=EMLSAG00000003903|organism=Lepeophtheirus salmonis|type=gene|length=2220bp|location=Sequence derived from alignment at LSalAtl2s210:70887..73106+ (Lepeophtheirus salmonis)
ATGGACGTTCTGATGCGAATGTCAAGGTAAAACCTCTGATGCTTCAGAAG
AGGCCGAGAAAATCCAGAGTACTTGTCTTTATCACAGAGCGCTGTCTTCC
TGCTTAGATTGATATTATTGCCTGCTGATGGGGAGGATGGAGACATCAGG
CTGATGGGAACCTGAAAATCAACTGTCCAATGTTGTATGTAGACATGGAC
ATGCTTCGGTTTTCACCTATTCAATATTCATAAGTAGGTAATAACTAATA
AAAACGTAAATTAGAAAAGTGAAGAGTTGTCTACGTACTCCTAGTTGTTA
CTGTAGGTCTCTAGCTGGCTAGAAAGAAAAGGGGAGGGAAAAAAGGAGGA
AAGAAAGAAAGAAGCAGAGAGAAAGAAAGTGGAGGTGTACGTCAGCTGCC
TAGGATGCTGCAGGGAGTAGTAGTACTGATAGCCAGCATAGTCGTCCTCA
TACAACACCTCGCAACCTTTTCTTCAAAAAAAGAAAGAAAACAATACAAT
AATATGTAGTAGGGGAGACAGAGAACGGTTAGAATCATCCCTTTTCCTCA
ACATCAACATCAAAAAACTATAACCATTTAATTTACATCACAATTGTCTA
TTGTGGAAAAAAAACAATAATTCTTCTCAGTTGTTCTTCAAATATTGGAT
ACAAACAGATTTTGAGGCGTAAAAGTATTTTTTTTTTTCAAGAAATTTAT
TTTTTTAATAAAAGGGGCGTCCGGGGCTGTAGCTCCCCCCCCCCAAATTA
AGGATTTTTTTTTTTAAGAATTTGTTTTTCAAACTTTTTGTGAATAGACA
TGAATTTTGGAATTTTTTTTTACAAAATATTTAATATTTGAATTTTTTTG
GGAATAGCTGTGGATTTTTTAATTTAAAAAAAAAATTGATAATTTTATTT
TCTATGCATAGTCTTTGGCTACGGGAACAGTTGCAACATTTGGAAGGTTG
GTATTCAAATGCAATTTTTGAAAAGTTATTTCCTAATATAACCTACAAAT
AGATTAAAACAATAGCAGACATATTTAGGTATGATGTGATAAAATTTGGA
GAGTTTTAGTCAAACCAACCTGAGCAAAAAAAAAAAAATGTAACTGTTCC
CGGTCTTACCTACGACCCTCCTATTTGTTACTCTTTTACTATAGAGAATA
CAGGGAGCGCTCTAGAGAAGGAGTATGCACTCTTTTTAATATTTTACAAG
TTGTCATCATAGAGATATAAATTATAATGTATAGTGTTTACTCTCTAAAA
TGACGAGGACAATTTATTAAAGCGGTCAGCTGATGAAAAATAAAGAAACA
TAAGGATCAAATCATTTAGTTATTATGTCAACATTAGCCTTTCAGTTATC
AGTAGCATTTCTTAAAATCTTAATAAATTAATAATTAGTGATAAAATAGC
CTTCTCATTTTTACAAAAGGAGTTTGGTATTAGGTAAGTTTATCATAGTG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAT
TATAACCTTATATTTTCAGATGTCCTAAAAATCCAGTGCTTCTAAAGCGA
TGGATAGTAAACTGCCGTTGGCAAGATTGGAAACAAACCAAATGGTCAAG
GGTATGTTTTAAGCACTTCAACGACTCTGACATCATCAAGCACAAAGTTA
AAGGCACTCTTGTTAGTTTTTGATTGAGCAGTGCCCCCCATTATTGACTT
TCCAATACACTTTAAAAAAGTGGAGTCCCATTGACGAATCTTAAAGCGAA
GAACTTATGAAGAAGACAGTACTAAAAAAAGGAATTCTGATGACATGGAA
AAAAGGCCAACTGTAAATATAGTCATTACTCATACATATGCCCTACCTAG
TACTATGGAATCCTTGGTGGCGGTGAAAAAATAGAGTAAAAAAGACATCC
TGAAATCAAGATAGGAGTTATCTTTGATAGTTGCCATATCTTATTCAGTT
TAAGAATCAATAATTTGAAAAATATCAATGATATGTTGAAAAACTTAATA
TTATTAGTATTTAATATTTT
back to top
Add to Basket