EMLSAG00000004261, EMLSAG00000004261-687027 (gene) Lepeophtheirus salmonis

Overview


Name	EMLSAG00000004261
Unique Name	EMLSAG00000004261-687027
Type	gene
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of EMLSAG00000004261 vs. GO
Match: - (symbol:G3N3W9 "Uncharacterized protein" species:9913 "Bos taurus" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 Pfam:PF00237 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 OrthoDB:EOG70GMHF TreeFam:TF300042 EMBL:DAAA02026141 Ensembl:ENSBTAT00000009737 OMA:RAYGRIN Uniprot:G3N3W9)

HSP 1 Score: 45.0542 bits (105), Expect = 5.124e-5
Identity = 25/59 (42.37%), Postives = 30/59 (50.85%), Query Frame = 0

Query:   15 LHCMNVLISIGVFKVLAEDHLVIDHIQVNRAPHMRCRTQRVQVVLVEKRQSFSQVPCGT 73
            LH +    S    K L  D LVI+HIQVN+AP MRCRT R    +      +   PC T
Sbjct:   50 LHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRCRTYRAHSRI----NPYMSSPCHT 104

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BLAST of EMLSAG00000004261 vs. GO
Match: - (symbol:LOC607592 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 OrthoDB:EOG70GMHF TreeFam:TF300042 EMBL:AAEX03011013 OMA:NTCETAL Ensembl:ENSCAFT00000015649 Uniprot:J9P4F7)

HSP 1 Score: 45.4394 bits (106), Expect = 6.775e-5
Identity = 30/92 (32.61%), Postives = 46/92 (50.00%), Query Frame = 0

Query:   15 LHCMNVLISIGVFKVLAEDHLVIDHIQVNRAPHMRCRTQR--------------VQVVLVEKRQSFSQVPCGTPKKKKVYQLEVEEAEASSR 92
            LH +    S    K L  D LVI+HIQVN+AP MRCRT R              ++++L EK     +      +KKK+ Q ++++ +  +R
Sbjct:   92 LHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRCRTYRAHGRINPYMSSPCHIEMILTEKEPIVPKPEEEVAQKKKISQRKLKKQKLMAR 183

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BLAST of EMLSAG00000004261 vs. GO
Match: - (symbol:RPL17 "60S ribosomal protein L17" species:9606 "Homo sapiens" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 HAMAP:MF_01331_A EMBL:AC100778 HGNC:HGNC:10307 ProteinModelPortal:J3KRX5 Ensembl:ENST00000583637 NextBio:35535710 ArrayExpress:J3KRX5 Uniprot:J3KRX5)

HSP 1 Score: 41.9726 bits (97), Expect = 9.846e-4
Identity = 29/81 (35.80%), Postives = 39/81 (48.15%), Query Frame = 0

Query:   15 LHCMNVLISIGVFKVLAEDHLVIDHIQVNRAPHMRCRTQR--------------VQVVLVEKRQSFSQVPCGTPKKKKVYQ 81
            LH +    S    K L  D LVI+HIQVN+AP MR RT R              ++++L EK Q   +      +KKK+ Q
Sbjct:   92 LHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQ 172

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BLAST of EMLSAG00000004261 vs. C. finmarchicus
Match: gi|592785796|gb|GAXK01168772.1| (TSA: Calanus finmarchicus comp52_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 52.373 bits (124), Expect = 8.243e-8
Identity = 29/68 (42.65%), Postives = 38/68 (55.88%), Query Frame = 0

Query:   15 LHCMNVLISIGVFKVLAEDHLVIDHIQVNRAPHMRCRTQR--------------VQVVLVEKRQSFSQ 68
            LH +    S   +K L  DHLVI+HIQVNRAP MR RT R              +++ LVEK Q+F++
Sbjct:  150 LHMLKNAESNAEYKGLDADHLVIEHIQVNRAPKMRRRTYRAHGRINPYMSSPCHIEICLVEKEQAFAR 353

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BLAST of EMLSAG00000004261 vs. C. finmarchicus
Match: gi|592851707|gb|GAXK01105837.1| (TSA: Calanus finmarchicus comp3760062_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 46.2098 bits (108), Expect = 1.289e-5
Identity = 28/62 (45.16%), Postives = 33/62 (53.23%), Query Frame = 0

Query:   27 FKVLAEDHLVIDHIQVNRAPHMRCRTQR--------------VQVVLVEKRQSFSQVPCGTP 74
             K L  DHLVIDHIQVNRAP+MR RT R              ++V+L EK    S+V    P
Sbjct:  100 LKGLDVDHLVIDHIQVNRAPYMRRRTYRAHGRINPYMSTPCHLEVILSEKEDVVSKVKDDEP 285

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BLAST of EMLSAG00000004261 vs. C. finmarchicus
Match: gi|592945695|gb|GAXK01012858.1| (TSA: Calanus finmarchicus comp2990350_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 1.390e-1
Identity = 16/28 (57.14%), Postives = 18/28 (64.29%), Query Frame = 0

Query:   28 KVLAEDHLVIDHIQVNRAPHMRCRTQRV 55
            K L  D L I H+Q NRAP+MR RT R 
Sbjct:  349 KGLKTDALRITHVQCNRAPYMRRRTYRA 432

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BLAST of EMLSAG00000004261 vs. C. finmarchicus
Match: gi|592757143|gb|GAXK01197270.1| (TSA: Calanus finmarchicus comp1356628_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 1.411e+0
Identity = 21/69 (30.43%), Postives = 35/69 (50.72%), Query Frame = 0

Query:  127 LPQLE-DLDIPRIHALWTGVTF------TVLSNCLTLNSIYSHKEVNTLLPAQSVFISGAGVSARFYFG 188
            LP L   + + R++ LW    F      +VLS CL  ++I +  +V T  P+ S+F S +  ++   FG
Sbjct:  108 LPWLTIGISVTRVYGLWPVFIFNPFLFNSVLSMCLVSSTILNGSQVTTS*PSLSIFHSTSSAASALNFG 314

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BLAST of EMLSAG00000004261 vs. C. finmarchicus
Match: gi|592814455|gb|GAXK01140113.1| (TSA: Calanus finmarchicus comp8780814_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 2.895e+0
Identity = 22/63 (34.92%), Postives = 32/63 (50.79%), Query Frame = 0

Query:   35 LVIDHIQVNRAPHMRCRTQR--------------VQVVLVEKRQSFSQVPCGTPKKKKVYQLE 83
            L I HIQVNRAP +R RT R              V+++L +K+    +   G  +K +V +LE
Sbjct:   82 LHISHIQVNRAPCLRRRTYRAHGRINPYMSSPCHVELILSQKQVGVKKAAGG--RKNRVSKLE 264

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BLAST of EMLSAG00000004261 vs. C. finmarchicus
Match: gi|592923935|gb|GAXK01034480.1| (TSA: Calanus finmarchicus comp358670_c0_seq12 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 4.759e+0
Identity = 18/61 (29.51%), Postives = 31/61 (50.82%), Query Frame = 0

Query:   10 GFVIYLHCMNVLISIG------VFKVLAEDHLVIDHIQVNRAPHMRCRTQRVQVVLVEKRQ 64
             F  +L   N+L+++       V  +L   HL+IDH+     P + C  + V+ V+VE+ Q
Sbjct:  183 SFKYFLSPANILVAMPKSFCCPVCNILCPVHLLIDHLHKPGLPDLHCALKSVE-VMVERIQ 362

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BLAST of EMLSAG00000004261 vs. C. finmarchicus
Match: gi|592935984|gb|GAXK01022569.1| (TSA: Calanus finmarchicus comp7731594_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 4.803e+0
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 0

Query:   33 DHLVIDHIQVNRAPHMRCRTQRV 55
            D L++ HIQV RAP +R RT R 
Sbjct:  210 DTLIVRHIQVQRAPKIRRRTYRA 278

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BLAST of EMLSAG00000004261 vs. C. finmarchicus
Match: gi|592873162|gb|GAXK01084400.1| (TSA: Calanus finmarchicus comp5236245_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 5.588e+0
Identity = 14/21 (66.67%), Postives = 15/21 (71.43%), Query Frame = 0

Query:   35 LVIDHIQVNRAPHMRCRTQRV 55
            L I HIQVNRAP +R RT R 
Sbjct:  203 LHISHIQVNRAPCLRRRTYRA 265

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BLAST of EMLSAG00000004261 vs. C. finmarchicus
Match: gi|592842588|gb|GAXK01114956.1| (TSA: Calanus finmarchicus comp1382689_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 5.924e+0
Identity = 14/38 (36.84%), Postives = 21/38 (55.26%), Query Frame = 0

Query:  132 DLDIPRIHALWTGVTFTVLSNCLTLNSIYSHKEVNTLL 169
            D D P    L   V     S+C++ N++YS K V+T+L
Sbjct:   97 DSDEPSTRLLTVDVNIISNSDCMSKNNVYSTKVVDTML 210

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BLAST of EMLSAG00000004261 vs. C. finmarchicus
Match: gi|592860424|gb|GAXK01097138.1| (TSA: Calanus finmarchicus comp602452_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 6.375e+0
Identity = 18/84 (21.43%), Postives = 41/84 (48.81%), Query Frame = 0

Query:   20 VLISIGVFKVLAEDHLVIDHIQVNRAPHMR-CRTQRVQVVLVEKRQSFSQVPCGTPKKKKVYQLEVEEAEASSRCIQRCHNTSH 102
            V+  I + + L ED ++++ +   R   +    T+ ++V++   R   + +  G   + ++ +L+ E  E S   +  CH T+H
Sbjct:  253 VVKDINIMRGLGEDSVMLEPVDDCRMMDIGLAGTENMEVIVPGNRDMVNIITLGVEARPEIIKLQ-EHLETSGLTLDACHQTNH 501

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BLAST of EMLSAG00000004261 vs. L. salmonis peptides
Match: EMLSAP00000004261 (pep:novel supercontig:LSalAtl2s:LSalAtl2s222:430588:439695:1 gene:EMLSAG00000004261 transcript:EMLSAT00000004261 description:"snap-LSalAtl2s222-processed-gene-5.14")

HSP 1 Score: 394.815 bits (1013), Expect = 2.899e-141
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0

Query:    1 MHEVVNITVGFVIYLHCMNVLISIGVFKVLAEDHLVIDHIQVNRAPHMRCRTQRVQVVLVEKRQSFSQVPCGTPKKKKVYQLEVEEAEASSRCIQRCHNTSHSVKYTTKTITINISSGVEEQTSKVLPQLEDLDIPRIHALWTGVTFTVLSNCLTLNSIYSHKEVNTLLPAQSVFISGAGVSARFYFGGKA 191
            MHEVVNITVGFVIYLHCMNVLISIGVFKVLAEDHLVIDHIQVNRAPHMRCRTQRVQVVLVEKRQSFSQVPCGTPKKKKVYQLEVEEAEASSRCIQRCHNTSHSVKYTTKTITINISSGVEEQTSKVLPQLEDLDIPRIHALWTGVTFTVLSNCLTLNSIYSHKEVNTLLPAQSVFISGAGVSARFYFGGKA
Sbjct:    1 MHEVVNITVGFVIYLHCMNVLISIGVFKVLAEDHLVIDHIQVNRAPHMRCRTQRVQVVLVEKRQSFSQVPCGTPKKKKVYQLEVEEAEASSRCIQRCHNTSHSVKYTTKTITINISSGVEEQTSKVLPQLEDLDIPRIHALWTGVTFTVLSNCLTLNSIYSHKEVNTLLPAQSVFISGAGVSARFYFGGKA 191

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BLAST of EMLSAG00000004261 vs. L. salmonis peptides
Match: EMLSAP00000006484 (pep:novel supercontig:LSalAtl2s:LSalAtl2s354:78083:78928:-1 gene:EMLSAG00000006484 transcript:EMLSAT00000006484 description:"augustus_masked-LSalAtl2s354-processed-gene-0.5")

HSP 1 Score: 70.8626 bits (172), Expect = 1.224e-15
Identity = 39/75 (52.00%), Postives = 45/75 (60.00%), Query Frame = 0

Query:   15 LHCMNVLISIGVFKVLAEDHLVIDHIQVNRAPHMRCRTQR--------------VQVVLVEKRQSFSQVPCGTPK 75
            LH +    S   FK L  DHLVIDHIQVNRAPHMR RT R              ++VVLVEK Q+FS+VP  TP+
Sbjct:   92 LHLLKNAESNAEFKGLDVDHLVIDHIQVNRAPHMRRRTYRAHGRINPYMSSPCHIEVVLVEKEQAFSKVPSDTPE 166

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BLAST of EMLSAG00000004261 vs. nr
Match: gi|225714586|gb|ACO13139.1| (60S ribosomal protein L17 [Lepeophtheirus salmonis])

HSP 1 Score: 70.8626 bits (172), Expect = 6.182e-12
Identity = 39/75 (52.00%), Postives = 45/75 (60.00%), Query Frame = 0

Query:   15 LHCMNVLISIGVFKVLAEDHLVIDHIQVNRAPHMRCRTQR--------------VQVVLVEKRQSFSQVPCGTPK 75
            LH +    S   FK L  DHLVIDHIQVNRAPHMR RT R              ++VVLVEK Q+FS+VP  TP+
Sbjct:   92 LHLLKNAESNAEFKGLDVDHLVIDHIQVNRAPHMRRRTYRAHGRINPYMSSPCHIEVVLVEKEQAFSKVPSDTPE 166

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BLAST of EMLSAG00000004261 vs. nr
Match: gi|225711442|gb|ACO11567.1| (60S ribosomal protein L17 [Caligus rogercresseyi])

HSP 1 Score: 70.4774 bits (171), Expect = 8.622e-12
Identity = 39/75 (52.00%), Postives = 45/75 (60.00%), Query Frame = 0

Query:   15 LHCMNVLISIGVFKVLAEDHLVIDHIQVNRAPHMRCRTQR--------------VQVVLVEKRQSFSQVPCGTPK 75
            LH +    S   FK L  DHLVIDHIQVNRAPHMR RT R              ++VVL+EK QSFS+VP  TP+
Sbjct:   92 LHLLKNAESNAEFKGLDVDHLVIDHIQVNRAPHMRRRTYRAHGRINPYMSSPCHIEVVLLEKEQSFSKVPTETPE 166

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BLAST of EMLSAG00000004261 vs. nr
Match: gi|225718404|gb|ACO15048.1| (60S ribosomal protein L17 [Caligus clemensi])

HSP 1 Score: 64.6994 bits (156), Expect = 1.247e-9
Identity = 37/75 (49.33%), Postives = 43/75 (57.33%), Query Frame = 0

Query:   15 LHCMNVLISIGVFKVLAEDHLVIDHIQVNRAPHMRCRTQR--------------VQVVLVEKRQSFSQVPCGTPK 75
            LH +    S   FK L  DHLVIDHIQVNRAPHMR RT R              ++VVLVEK Q+FS+V    P+
Sbjct:   92 LHLLKNAESNAEFKGLDVDHLVIDHIQVNRAPHMRRRTYRAHGRINPYMSSPCHIEVVLVEKEQAFSKVAPEAPE 166

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BLAST of EMLSAG00000004261 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold505_size153196-snap-gene-0.21 (protein:Tk06001 transcript:maker-scaffold505_size153196-snap-gene-0.21-mRNA-1 annotation:"60s ribosomal protein l17")

HSP 1 Score: 57.3806 bits (137), Expect = 2.602e-10
Identity = 32/73 (43.84%), Postives = 40/73 (54.79%), Query Frame = 0

Query:   15 LHCMNVLISIGVFKVLAEDHLVIDHIQVNRAPHMRCRTQR--------------VQVVLVEKRQSFSQVPCGT 73
            LH +    S   +K L  DH+VIDHIQVNRAP+MR RT R              ++V LVEK Q+F +   GT
Sbjct:  209 LHLLKNAESNAEYKGLDVDHMVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEVCLVEKEQTFQKNAAGT 281

The following BLAST results are available for this feature:

BLAST of EMLSAG00000004261 vs. GO
BLAST of EMLSAG00000004261 vs. C. finmarchicus
BLAST of EMLSAG00000004261 vs. L. salmonis peptides
BLAST of EMLSAG00000004261 vs. SwissProt
BLAST of EMLSAG00000004261 vs. Select Arthropod Genomes
BLAST of EMLSAG00000004261 vs. nr
BLAST of EMLSAG00000004261 vs. Tigriopus kingsejongenis genes

BLAST of EMLSAG00000004261 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 3


Match Name	E-value	Identity	Description
-	5.124e-5	42.37	symbol:G3N3W9 "Uncharacterized protein" species:99...	[more]
-	6.775e-5	32.61	symbol:LOC607592 "Uncharacterized protein" species...	[more]
-	9.846e-4	35.80	symbol:RPL17 "60S ribosomal protein L17" species:9...	[more]

BLAST of EMLSAG00000004261 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11


Match Name	E-value	Identity	Description
gi\|592785796\|gb\|GAXK01168772.1\|	8.243e-8	42.65	TSA: Calanus finmarchicus comp52_c0_seq1 transcrib...	[more]
gi\|592851707\|gb\|GAXK01105837.1\|	1.289e-5	45.16	TSA: Calanus finmarchicus comp3760062_c0_seq1 tran...	[more]
gi\|592945695\|gb\|GAXK01012858.1\|	1.390e-1	57.14	TSA: Calanus finmarchicus comp2990350_c0_seq1 tran...	[more]
gi\|592757143\|gb\|GAXK01197270.1\|	1.411e+0	30.43	TSA: Calanus finmarchicus comp1356628_c0_seq1 tran...	[more]
gi\|592814455\|gb\|GAXK01140113.1\|	2.895e+0	34.92	TSA: Calanus finmarchicus comp8780814_c0_seq1 tran...	[more]
gi\|592923935\|gb\|GAXK01034480.1\|	4.759e+0	29.51	TSA: Calanus finmarchicus comp358670_c0_seq12 tran...	[more]
gi\|592935984\|gb\|GAXK01022569.1\|	4.803e+0	56.52	TSA: Calanus finmarchicus comp7731594_c0_seq1 tran...	[more]
gi\|592873162\|gb\|GAXK01084400.1\|	5.588e+0	66.67	TSA: Calanus finmarchicus comp5236245_c0_seq1 tran...	[more]
gi\|592842588\|gb\|GAXK01114956.1\|	5.924e+0	36.84	TSA: Calanus finmarchicus comp1382689_c0_seq2 tran...	[more]
gi\|592860424\|gb\|GAXK01097138.1\|	6.375e+0	21.43	TSA: Calanus finmarchicus comp602452_c0_seq1 trans...	[more]

Pages

BLAST of EMLSAG00000004261 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2


Match Name	E-value	Identity	Description
EMLSAP00000004261	2.899e-141	100.00	pep:novel supercontig:LSalAtl2s:LSalAtl2s222:43058...	[more]
EMLSAP00000006484	1.224e-15	52.00	pep:novel supercontig:LSalAtl2s:LSalAtl2s354:78083...	[more]

BLAST of EMLSAG00000004261 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000004261 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000004261 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 3


Match Name	E-value	Identity	Description
gi\|225714586\|gb\|ACO13139.1\|	6.182e-12	52.00	60S ribosomal protein L17 [Lepeophtheirus salmonis...	[more]
gi\|225711442\|gb\|ACO11567.1\|	8.622e-12	52.00	60S ribosomal protein L17 [Caligus rogercresseyi]	[more]
gi\|225718404\|gb\|ACO15048.1\|	1.247e-9	49.33	60S ribosomal protein L17 [Caligus clemensi]	[more]

BLAST of EMLSAG00000004261 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1


Match Name	E-value	Identity	Description
maker-scaffold505_size153196-snap-gene-0.21	2.602e-10	43.84	protein:Tk06001 transcript:maker-scaffold505_size1...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s222	supercontig	LSalAtl2s222:430588..439695 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016
Blast vs. GO	2014-04-02
TblastN vs C. finmarchicus TSA	2014-05-09
Blastp vs. self	2014-05-10
Blastp vs. SwissProt	2017-02-10
Blastp vs. Selected Arthropods	2017-02-20
Blastp vs. NR (2/2017)	2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins	2018-04-18

Properties


Property Name	Value
Logic name	ensemblgenomes
Description	snap-LSalAtl2s222-processed-gene-5.14
Biotype	protein_coding
Evidence	IEA
Note	60S ribosomal protein L17 [Lepeophtheirus salmonis]

Cross References

External references for this gene


Database	Accession
Ensembl Metazoa (gene)	EMLSAG00000004261 (primary cross-reference)

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
EMLSAT00000004261	EMLSAT00000004261-700108	Lepeophtheirus salmonis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at LSalAtl2s222:430588..439695+

gene from alignment at LSalAtl2s222:430588..439695+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAG00000004261-687027 ID=EMLSAG00000004261-687027|Name=EMLSAG00000004261|organism=Lepeophtheirus salmonis|type=gene|length=9108bp|location=Sequence derived from alignment at LSalAtl2s222:430588..439695+ (Lepeophtheirus salmonis)
ATGCATGAGTATATTACACCTTTCCAACTTCAAATTTTGTGAATATAATT
TCAGTCACATTTAGATCAATGACAATTCTCATCTAGTTGATGTGAGATTA
GTAGTTTTGTTTCGGTTTTTTTTTGTTTTTTTTTTGCTGTTGAAGATTTA
GGCAATATGTTTGAGAGCTATTTCGGTTTTGCATTTAAATATTAGGGGTT
GGGCTTCTGTATGAGTGAGTAATAAAAAGTTTTTTTTAAAAAATTATTTT
GTTTTTTAGAGTTGTGAATATTACTGTTGGTTTTTCTCAAAAAAAAAAAA
AAGGAAAACTTACACATATTAAAAATAATAAAATATGGTGTACTATATAT
TATATTTATAGTCATAAATAAATGGAAAAAAATTCACATAAATTACAAAA
AAACATTCCTCATTAAAATACATACTTATAAACACGAAGGTTCTTATGCA
AAATAATGCATAAATAACTTCATGAAATACACAAAACAAAAACACAGCGA
GTAATGAGGTTTTTATTTCACAAAATATATAACAAGGGGAGATCAAACAT
AGTTGTCAGACGGTACATTTTGAACAGGGAGTTCCATCTASCAGCCACAA
ATAATCACTCTTGGGGTATTGTCCTTCAACCAGTTTAATATATGGTKCCT
AAGCACTCGGATGTGAGCCTCTGTGTCGACAGACTATCCATGTTCGGAAA
GTAGAACGGCATCCTCTTACCGTCACTGAAAATGACTTGATAGACCATAA
TGGAGGCAGGATGATTTGTGTGGTCAATTCCTCGGACCTCTCACGGTTGT
GAAGCTTGTCTAGGTGAAGGTCTTCTTGAAGGAGAGTGTAATGATTTTAT
TATTTTGATCTTTTGAATTCATTTTTCTAGATATCTGAACGAAACTTGGA
GTGAAGAAATAAAAATAAAATACTTCCTTTGTATACTTTAGTTCAACGTA
AAAAAGGGTTGTGAGATCTGGTAAATTAACATCAAATTCATTTAAGTTTA
TTTTCAGCTATCCTGTAATCTTTTGGAGGAATGATATTTGTTTTCTTTAA
GGGGCCATGTTCAATGTGTAAGTGCAGGCTTTTGCATTTTTTGCAAATCC
CTTCCCATTTGGCACATGATTTATTATTATCATCTCTCCTGCAACTTACA
TACATATATACTTTGTATATACCCTCTAATGCAAACAGTTTTTCATTGTT
TATGCTGTAAATTATATCAATTGAATGATTGATTATTTTACTATCAATTA
ATACAATTATATCAAAATTCAAAAATCATTCAGTGAGAAGAAATTTGAGA
TATATGAACACTGACGACAAAGGGGACTTTAGCAACAAGTGTTCCCATTT
TCCTTCTCATTGTTTATTTTTAAAGGATATATTGAGTGCCCCATCAGTTG
CCTCTTTCCAGTAGGCAATAAAACACGCTTCATAAATCAGAAAAGTTTTA
TTTTCTTTTCATAATGATAATATACATTTAAAGTTTTCTTTTAAAGAGTT
TTGAAAATCATATTGGATAGATAACATCCTTTATTGTTGAATAAACCAAA
CTTCGATATTTTAATACAAACGATTTTCCATTTTTTTTAAAAACTTATTT
AGTAAGAGGTCTTAAAAAGATGTTTATTTTATTAAAAAAAAGTAAAAATT
AAATTTGTAAAATGTGTTACTTTATAATTGTTAATAAATAGTTAATCATT
TTCCATTTCGGAAAGCTCTTAAAAATGTTGGTATTTCAGGAGAAAATCCG
GTCTCAATAATTCAATTTACAAACTTCCCCAATTTAAAATTTTTGCATGA
CACCAAATCTGTTGGTATCCATTTAGCTCCCTATCACCCCTATCCTTGGG
GTTGCTTGCGTTCAAAGAATTTTTAATTAATTTCAAATCAAAAAAAAATT
TATTAACAAAATATTTTTTTGGTAATTTAGAAATTGAAGCAATCAACCTA
TTTTTGACATAACGCACAAATAANNNNNNNNNNNNNNNNTGCTTGCGTTC
AAAGAATTTTAATTAATTTCAAATCAAAAAAAAATTTATTAACAAATATT
TTTTGGTAATTTAGAAATTGAAGCAATCAACCTATTTTTATATAACGCAC
AAATAAAAACTCAAGAACTCAATTACAAATAAAAGAACAGTACTCTACCT
ATTATTGAAGTTAAATAATCTAACTAATCTATTATATTATATTCATTATA
TGTGAACCAATATATATTTTTATCTTAATGTTATATAATAAATGAAAATT
AATAGTTGAATTCATTGAAATATCTTTTTATTTATAAATCAAATAATATT
CTAAAGACTGTTTTTCTTCATTTATAACTGAAATTCCATTGTTTTTAGTT
GTTGTACCCGTCTCTGACTGCAAAAAACAGTTGCAACATTTAAGGGATCG
TACTCAAATGCAATTTGTGTAAAAAAAAAAATTCTAATTGAACTCAATAT
ACAAATTTTTAAATTGGAGTAAAAATTACTTTGAACTTTTTTTCCATTTT
CTTCAACTAATGACTCTATTTATATTCCTTCATGAGGGAATTAAAATTTT
GAGCGATTATTCAAATTCTCTATAATTCCATGATTCCCACAATATTTGAA
TTTATTTAAAAAAATAAAAGAATGACCTTTTTTAAAAAAAATTCTGAAAT
GCAAGTAGCAAATATTTGACCAAATCTTGAATCACCACCCTAAAGCAAAA
AAGAATAATTTCATGCCTGTCTTCCCTGCACATATTGGAATTACATGCAT
AGAATATGCTTATGAAAGTTATCTTTTATACCTTTTTATATTACAAACAT
ACTTCTACCTACCAGACATTTATTAACTCCTCATAATATACCATTAAACT
CAACATAAATAATTCCGTAAGAGGTTGTAAGTCATTTTTTGACGCATTCT
ATTCATACAAAAATTAGATTCCCAGTGTGAGCATAAAATAACGGTTTCTT
ACATACTAGATCAAACTTAGTACTATGTTGTACATTAGAGTGGTCACTAT
TTTTTAATCAAAATACATAGTATAGGTATGTTACAAAAGAGGGAGTCCTG
TAATCTTTTTTCTCACCCATGTATTAAGTTGGTCGAATAAGCAGTTTTAT
GACGCATAAAGCGCTATATATATGCACATACTTTAAATCATAAATTTGAT
GACTTTTTCTTAAAGACATGACAAAAAAATTACTCTAAAAATGTTCTAGA
GGGTTTAAACTATGATGGCATTTCAAAAATTCCAGAAAAAGTTGCAATAT
ATAGCTTCATTTAATAACTTAAAATAACTTCCGAATTGCCTTCGACGTTT
TGCGTCAAAAATGGCCCTTCTAATTAATAGAAAAATATTTTTTTAAGCCT
TAGAACCTAAACTATGAACAATTTTCTATTCATTAGTGAAAAACATATAT
AAATTGATAGACAGAATCAGTTTTTATGAGATGWATAAKTTRGTAGGCGC
TAATYTATGCTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTGAGGTATTTATGGGAAGATACAC
TCCATAGACAACGTAAGAGTCCCTTTTCAAGTTCATATTTTGACTTTTTT
TAGGCTTTGTGATATACTTACATTGTATGAATGTTCTTATTGTAAGTTGG
AATGTAGCATGTTCCAGGATTACAATAATAGTTGTTGTTTTTTACTTGCC
TCTTAGTGTCTCCGAAATAGCACAGGGCTATTAACTCCCCGAATAAATGC
CAAGCCAAGTGGCTCCMACTTGACAATCCATTTTAAGCCCACAAAGGAGT
CCGCTCAAGCCATTTAGAAAATMCCACTGCACCGTGCCACCACCTACTGC
TATAATGTAATCAACCAAAAAGAAATAATCCCATCCTCTCGCTTAAAGAG
AGGCATTATTCGCCCTGCACACGCCAAGGTTCACGGAAAGAGCCAAGTTC
CTTGGCACACAAAGTCTGCAGTTTTTATTTTTTCATTTGTGGAAAAATGC
TAAGAGTATTGGAGTTTTCAAGGTACTTGCAGAGGATCACTTGGTCATTG
ATCATATCCAAGTGAATCGTGCTCCTCATATGAGATGTCGTACACAGCGT
GTTCAAGGTAGAATCAATCTCTAGATAAGCTCTCCTTGACATATTAAAGT
TGTTTTGGTTGAGAAGAGACAATCCTTCTCTCAAGTTCCCTGTGGTACTC
CCAAAAAGAAGAAGGTTTATCAATTAGAAGTTGAAGAAGCAGAAGCTTCA
AGTAGATGCATCCAAAGGTGTCATAATACATCTCATTCTGTTAAATATAC
AACTAAAACCATAACTATAAATATATCATCAGGTGTCGAAGAACAAACTA
GTAAAGTCTTGCCGCAAGTATATAATGAATATTTTAAAATAATCAAAAAG
CCTCCCTCTTCAAATAAACTCCTAGTAACGGACCTAAATTTAAATTAAGT
TTAAATGAAAACTGTCTACTATTTCATTTCGAAAATAGTGAACACTCTAA
TAATATACATATGTTTTTACGTAATTTCTTGATATTCCCTGCAATGTGCT
TGTATGTCTGTAATATATCTTGTCTGCTTGTTTATATTGCAGTAATATAT
GTTGTGTAGTTTATCGAAATATATGTATGTACATATTTTTATGCTTCTAC
TTTTATGGTATGTACTTATTTTCTGTAACTCGTTAGACCATGAACTACCC
CCATAACATGTGTTTAACTAACTTTATTGAAATAAATAATAAGGATAGGT
TGAAAGTTTGTACATACAAACTGTTGAAAGAAATAATATATGTTGGTAAT
CAGTGTTATWTCTGTAGAGTTGTATAAAATNATTTTCTGTAACTCGTTAG
ACCATGAACTACCCCATAACATGTGTTTAACTAACTTTATTGAAATAAAT
AATAAGGATAGGTTGAAAGTTTGTACATACAAAACTGTTGAAAGAAATAA
TATATGTTGGTAATCAGTGTTATATCTGTAGAGTTGTATAAAATTGGACC
TGCCAGTATTTGAAAATAAAAGAAACCGAAAAATGACGTGCAAATCCTGA
CAATTTGAAGAGTAATTCGTAGAAAAACACCTTAGCTGTTGTGACGTGTT
GGAGATATGATGTGAGCAGATATGAGAGTACATAAATAAACTCAAATCTC
ACTGCTTATCTATCAGGCATAGACTGGAATTAACAAATAGGCTGAAAAAT
CCAGGGCTTAAAAGAAAACACGTTTTTTCGTAAAAAAAGTGTGTTTTATT
AATTATTATTATTTAGTTTTTATTGATTCTCTTTATGTAGTAAAGTCCCC
ATAACAGGTTATAAGCCATTGCTCAGCCTACACGGTATTTTTCCCCATCA
ACAAGGAGCAGAAAAATTAAAATACAATTTTTTTCTCCCATTGCTTTGGA
ATAACAAAAGTAATTTCACAATTAGCACACTGACTCACAAACTAAATAAC
TGTAGTCTTTTGAAATTTGGCAGTAACTGAAAATGAAGATAATTTAAAAA
AGTAGTGCCATCTATATGTGAAACCTGTGACTTTTCAGCCCATGTGTTAC
TCTGATTTTGAACCTCGATTATACTCTAATTGGAAAAACAACTTACAAAT
ATAACTCCACAATCAATACTCAGAATTAATTTGTCTTATATGATCACAAC
AGTTTATATTTTGATGTTTTCTCTAAACTTTTTCGCACTCCGAGGAAAAA
TAGTGTCCCATAAATTTAATATTGTCTTAGTGCTGTTTTGTTTAAAGGGA
TCTTTCTTTTTATTTTTTTGTTTGATAGCCAAGATGTCAAACTTTGTTTC
ATGTTTGATAATAATACATTAGGAGTGAGTTTTAAATATTTTGTATGCTA
CTGAAAATCATCATCCTTTTTCCATATTTGAATACAAAAAACCTTCTTTT
TATTTTTGAAAGAAACGATTTGTATATCAAATATATGTTTGTTTTTATAT
TGATACATACATGTTTAAAATTATGTTTAGTTCTAATGAATATACAAGAA
ATTATTGGTTTCGCATTATAAAAGGATAAAGATCAAAACATAATTAATTT
TCAAATTCGGATCAATCTTAATTAACCTTCTAAATACTCATATATGAATA
ATAATAAACATTTAGTCTGCAAATAATCTATGTTTTTTTATTTACATCCA
TATAATATTTATTAAACATGATACAAATTGAAAAGATTAAAAAACCTTAC
TTATGTAATATAAATTTACATAACGCTATCTTTTATTAAAATACTATTCT
TTATATCCACGGAAAGAAAGATAAGTTATCGAACTTTTACTCTCTAAGAA
TATACAAATTTTTATATTCCGTTCTTTAAATGAGATTGTCACGTATTTTT
TTTGGTGAAAAACATGTTTTTGTTATTACAACTATATAAGTAGATTATTT
TTGTCTTTCCGAATAATTATTCAACTACGTGCCACTTACATAGGTACTAG
TGCTTAGGTTCGGTTTGGAAATCCTAGGCCGAATTTTGGTCTGGCCAGAT
CTCATAATGAAATTTGGTCTTCCAAAAAAAAAAAAAAATCAGGTTTGATC
TGATCAAACGTTATTATTTTTTTCTTGGCAAAGTAAAATGACCGAAGTAG
AAAAATAAAACTCGGTATCAAACCGAGTCTTAACCCTATTAGATTTGGGA
GTTCTTGAGGTCTTACGCCTAACTGAAGTTCCATGGAAATCTTGATTTGA
ACCCAGAGTCTCTTTTTTTTTCTTTTTTTGCCCAAAAATGGCTCAAAGGC
AATTGTCTTCTGAGTAAATGAGTGCCTGGCTAAGCATGATGATCTCGGAG
GGCCTCCAAAAGTGGTTTTCCAAGAAAATTGACTACTGTAGTTGTAGGTA
AAGTAAAGGAAACGAACTCTTGATCTCCCCCATGACCAGATCTGAATCCC
CTAGATTATAGTATCTGGTGGCAAGTGAATTAAATCAAATCTCAAATGTT
GAAGCCAKGAAGGMCTCTGTCAANGAGCAGTGGCTGCCATGTCAGAGGCC
TACAACAAAAACACCGGCAGCAAATCCCGCTGCCACCTAAAATCCGTTAT
TGCTGCCTACAGGAATTATATTTAATAAGATGTGTTTGACACTCATTTTA
ATTTAAAATTATACATACTTGTTTAATTTGTTTATTTTCTTGTCAAAACT
TTTGCACGATTCCGTATGGCTAAGACTAGCATAAAATTAATTATTTCTTA
TTAAAATATGTAAGGAAATATTTTAATTTAAAAATATTAGTTAGAGGATC
TTGATATTCCTAGGATCCAGTAAGTTAAATTTGTTCTCCGTGATCCAACT
CTATCACAAGTTGCAGAGAAACGAGAAATCCTAGTATATAGGTATTTTTT
ATTATATGTTTATATTTATTTATTGCATAGAGGACCATTTATCATCACTG
CAGCATTCATTATTTATATCTATCATTATACAAATGATGAGTGTATACCT
CTTAAAAATAGTTAAAACTAATCATATTTTGAAAGTGTATATAAACATAC
TTTATTCTATATTTGCATATGAAGGTCCTCACTTTATAACATGCTTTGAG
ATCAAAAGATATTAATTATTAACAAATCAATAACTAATTTGAATAAAATA
TATACTTCTTGAAAATGAAGATTAAAAATAATTTGTCTACGTGGTATTGG
TATAAGTATGTATTTTTAGAAATAAGTTACATTATAAAATTGATTCATAC
ATTAGAAAAGGTCTGTGATATTCATGATTAATGAACAAGAAATTTAATTT
AGAGATATTAGTGGATTTTCTTAGTATAAGTAGTATTTTCCCCATCAAGA
AGCAATGTGTAATTAAAACATGAAATTGTTTTGGAAATAACAAAAGTGGC
GTCACATTTAACTCAATAACTCACGAACTAAAGAACAAAATTTCATTAAA
TTTTAAAAGCGGTCCTTTTCTTTGGTAATGACTGAAAATGAGGTGTGTGT
TTTTTAAGTAGCCAAACTATGTGTGAAATTCAGAACTTTTCAAACCATTT
GTTATTTAATGTTCACAGTTTAATGTTTAGTATATAGTTAGTAGTTTTTT
TCTCAGCATTTGAACACTTCATTTAGTTTTTATGGCTGTTTTTTTACAAA
AGTATATACAACCTTTTCAAAATTGGTCAGACTTTATCTAGTTATATGGG
AACTTTGAGCATTGAAATGATTTTGTGTAGTATAGAGCAGATTCAATTGC
CTAGGCACGTATCCAAAAAATTGGCTGAATAATATTTGTTTAAAAGTCAT
TTTTGACAAAAAAATACAAAATCCACCGATGCATTGAACATTTTTCGTAA
TAATTCGTTTTGGTGCTGGCCCTTTGGGCCCAAGTTTCCACAAAAAAAAC
AAAAAAACTGAACAACTCCATAAGACATGTTTTCACTTTATGAACAATTT
TTTTAAATATAGTTCCAATGGTTGAATACTACAGTTTTAACCATATATTC
ATTGAAATAGAAATAAATAATCGTCTGAAAAGCATCCTGCTTAAAAAAGA
AAGCATGTTTCTTTTCTTTTTTTTTTGTTCAAAATTGGGTCTTTTAAAAA
TTATTATTATAATTTATTTATTTAAGCGCTTTATGGACCGGAGTCACATT
CACAGTTTTGAGTAATTGCTTAACTTTGAATAGTATTTATTCCCATAAAG
AAGTGAAGTAAAATTAAAACACAAAATTATATTGATCCATTCCTTTGTAA
ATAACAAAAGAAGCCTTACAAACTAAAAAAAAAACCCCAGATTGTCATGG
AATTTTTGATAGTTGTCTTTTAAAAATTAAGTACCAACTAAAAATGAGGT
AAATTTAAAAAAAAACCATTTATTTGTAAAGCAAGGGACTTTTCAGCCCA
TGTGTTGAGACGTTCTTCAACCAGACAAATTATCATCCAAAATATGTTTT
TTATTCAAACTATATATCAGGTATTCGCATCCTTTTTTTTTAGTGATGTA
CAACTTGTAAAATTATTATTTTACCAAAGCACCCTTTTACCAGCACAAAG
TGTTTTTATCTCAGGGGCAGGGGTGTCTGCAAGATTCTATTTTGGAGGAA
AGGCTTAG

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