EMLSAG00000005873, EMLSAG00000005873-688639 (gene) Lepeophtheirus salmonis

Overview


Name	EMLSAG00000005873
Unique Name	EMLSAG00000005873-688639
Type	gene
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of EMLSAG00000005873 vs. GO
Match: - (symbol:Dcr-1 "Dicer-1" species:7227 "Drosophila melanogaster" [GO:0003725 "double-stranded RNA binding" evidence=ISS] [GO:0016443 "bidentate ribonuclease III activity" evidence=IDA] [GO:0030422 "production of siRNA involved in RNA interference" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IDA;IMP;TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA] [GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=IMP;TAS] [GO:0035087 "siRNA loading onto RISC involved in RNA interference" evidence=IMP] [GO:0016442 "RISC complex" evidence=IDA] [GO:0031054 "pre-miRNA processing" evidence=IDA;IMP;TAS] [GO:0035195 "gene silencing by miRNA" evidence=TAS] [GO:0042078 "germ-line stem cell division" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0045448 "mitotic cell cycle, embryonic" evidence=IMP] [GO:0007279 "pole cell formation" evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP] [GO:0007367 "segment polarity determination" evidence=IGI] [GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0070883 "pre-miRNA binding" evidence=IDA] [GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0030727 "germarium-derived female germ-line cyst formation" evidence=IMP] [GO:0007294 "germarium-derived oocyte fate determination" evidence=IMP] InterPro:IPR000999 InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720 InterPro:IPR027417 SUPFAM:SSF52540 EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0007294 GO:GO:0045448 GO:GO:0046872 GO:GO:0003725 GO:GO:0003727 GO:GO:0048813 SMART:SM00358 PROSITE:PS50137 GO:GO:0004386 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0033227 GO:GO:0007279 GO:GO:0030422 GO:GO:0007367 GO:GO:0035087 GO:GO:0030727 GO:GO:0042078 KO:K11592 Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:42693 GeneTree:ENSGT00510000046789 OrthoDB:EOG78PV82 EMBL:AY050230 RefSeq:NP_524453.1 UniGene:Dm.1283 ProteinModelPortal:Q9VCU9 SMR:Q9VCU9 BioGrid:67642 DIP:DIP-23028N IntAct:Q9VCU9 MINT:MINT-923321 PaxDb:Q9VCU9 PRIDE:Q9VCU9 EnsemblMetazoa:FBtr0084324 GeneID:42693 KEGG:dme:Dmel_CG4792 UCSC:CG4792-RA FlyBase:FBgn0039016 eggNOG:COG0571 InParanoid:Q9VCU9 OMA:AKCALRQ PhylomeDB:Q9VCU9 GenomeRNAi:42693 NextBio:830091 PRO:PR:Q9VCU9 Bgee:Q9VCU9 GO:GO:0016443 GO:GO:0070883 Uniprot:Q9VCU9)

HSP 1 Score: 104.76 bits (260), Expect = 3.049e-25
Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 0

Query:   33 FDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            FD QP+LV H  PS SIILQ LTM N  D INLERLETIGDSFLKYAIT+YL+  Y+  HEG+LSHLRS
Sbjct: 1709 FDRQPDLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRS 1777

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BLAST of EMLSAG00000005873 vs. GO
Match: - (symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR000999 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50142 SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0003723 GO:GO:0006396 SMART:SM00358 PROSITE:PS50137 GO:GO:0090502 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017 EMBL:AL390254 UniGene:Hs.87889 HGNC:HGNC:17098 ChiTaRS:DICER1 EMBL:AK091513 Ensembl:ENST00000556045 UCSC:uc001ydy.1 HOVERGEN:HBG092134 NextBio:35469529 Uniprot:B3KRG4)

HSP 1 Score: 75.8702 bits (185), Expect = 2.054e-15
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0

Query:   45 PSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            P+  +ILQ LT+ N  D  NLERLE +GDSFLK+AIT+YLF  Y   HEGRLS++RS
Sbjct:  190 PNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRS 246

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BLAST of EMLSAG00000005873 vs. GO
Match: - (symbol:DICER1 "Endoribonuclease Dicer" species:10029 "Cricetulus griseus" [GO:0016442 "RISC complex" evidence=ISS] [GO:0030422 "production of siRNA involved in RNA interference" evidence=ISS] [GO:0030423 "targeting of mRNA for destruction involved in RNA interference" evidence=ISS] [GO:0031054 "pre-miRNA processing" evidence=ISS] InterPro:IPR000999 InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720 InterPro:IPR027417 SUPFAM:SSF52540 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872 GO:GO:0006200 Gene3D:3.30.160.20 GO:GO:0003723 SMART:SM00358 PROSITE:PS50137 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 GO:GO:0090502 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:23405 EMBL:EF031271 RefSeq:NP_001231198.1 ProteinModelPortal:A0MQH0 SMR:A0MQH0 GeneID:100689239 KEGG:cge:100689239 Uniprot:A0MQH0)

HSP 1 Score: 75.8702 bits (185), Expect = 2.639e-15
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0

Query:   45 PSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            P+  +ILQ LT+ N  D  NLERLE +GDSFLK+AIT+YLF  Y   HEGRLS++RS
Sbjct: 1292 PNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRS 1348

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BLAST of EMLSAG00000005873 vs. GO
Match: - (symbol:Dicer1 "dicer 1, ribonuclease type III" species:10090 "Mus musculus" [GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000212 "meiotic spindle organization" evidence=IMP] [GO:0001525 "angiogenesis" evidence=IMP] [GO:0001932 "regulation of protein phosphorylation" evidence=IMP] [GO:0001942 "hair follicle development" evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding" evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=ISO;ISA;IDA] [GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO] [GO:0006396 "RNA processing" evidence=IMP;IDA] [GO:0008283 "cell proliferation" evidence=IMP] [GO:0008593 "regulation of Notch signaling pathway" evidence=IC] [GO:0009791 "post-embryonic development" evidence=IMP] [GO:0010070 "zygote asymmetric cell division" evidence=IMP] [GO:0010468 "regulation of gene expression" evidence=IMP] [GO:0010626 "negative regulation of Schwann cell proliferation" evidence=IMP] [GO:0010628 "positive regulation of gene expression" evidence=IMP] [GO:0014040 "positive regulation of Schwann cell differentiation" evidence=IMP] [GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0016442 "RISC complex" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016891 "endoribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IMP] [GO:0021522 "spinal cord motor neuron differentiation" evidence=IMP] [GO:0021675 "nerve development" evidence=IMP] [GO:0021889 "olfactory bulb interneuron differentiation" evidence=IMP] [GO:0021987 "cerebral cortex development" evidence=IMP] [GO:0030324 "lung development" evidence=IMP] [GO:0030326 "embryonic limb morphogenesis" evidence=IMP] [GO:0030422 "production of siRNA involved in RNA interference" evidence=ISO;IMP;IDA] [GO:0030423 "targeting of mRNA for destruction involved in RNA interference" evidence=ISO] [GO:0030424 "axon" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030426 "growth cone" evidence=ISO] [GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=ISO;IDA] [GO:0031069 "hair follicle morphogenesis" evidence=IMP] [GO:0031641 "regulation of myelination" evidence=IMP] [GO:0031643 "positive regulation of myelination" evidence=IMP] [GO:0032290 "peripheral nervous system myelin formation" evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis" evidence=IMP] [GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=IMP] [GO:0035198 "miRNA binding" evidence=IDA] [GO:0035264 "multicellular organism growth" evidence=IMP] [GO:0042487 "regulation of odontogenesis of dentin-containing tooth" evidence=IMP] [GO:0045069 "regulation of viral genome replication" evidence=IMP] [GO:0045595 "regulation of cell differentiation" evidence=IMP] [GO:0045664 "regulation of neuron differentiation" evidence=IMP] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IMP] [GO:0048536 "spleen development" evidence=IMP] [GO:0048565 "digestive tract development" evidence=IMP] [GO:0048713 "regulation of oligodendrocyte differentiation" evidence=IMP] [GO:0048730 "epidermis morphogenesis" evidence=IMP] [GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IMP] [GO:0048812 "neuron projection morphogenesis" evidence=IMP] [GO:0048856 "anatomical structure development" evidence=IMP] [GO:0050767 "regulation of neurogenesis" evidence=IMP] [GO:0051225 "spindle assembly" evidence=IMP] [GO:0051252 "regulation of RNA metabolic process" evidence=IMP] [GO:0051607 "defense response to virus" evidence=IMP] [GO:0051726 "regulation of cell cycle" evidence=IMP] [GO:0055013 "cardiac muscle cell development" evidence=IMP] [GO:0060119 "inner ear receptor cell development" evidence=IMP] [GO:0060253 "negative regulation of glial cell proliferation" evidence=IMP] [GO:0060576 "intestinal epithelial cell development" evidence=IGI] [GO:0070173 "regulation of enamel mineralization" evidence=IMP] [GO:0071335 "hair follicle cell proliferation" evidence=IMP] [GO:0090501 "RNA phosphodiester bond hydrolysis" evidence=ISO] [GO:0090502 "RNA phosphodiester bond hydrolysis, endonucleolytic" evidence=ISO;ISA] [GO:2000628 "regulation of miRNA metabolic process" evidence=IMP] [GO:2000630 "positive regulation of miRNA metabolic process" evidence=IMP] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720 MGI:MGI:2177178 InterPro:IPR027417 SUPFAM:SSF52540 GO:GO:0005524 GO:GO:0010070 GO:GO:0005737 GO:GO:0021987 GO:GO:0045664 GO:GO:0051225 GO:GO:0046872 GO:GO:0030324 GO:GO:0006200 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812 GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 SMART:SM00358 PROSITE:PS50137 GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 GO:GO:0001932 GO:GO:0016075 GO:GO:0060119 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 GO:GO:0010626 GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0060576 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 GO:GO:0035196 HOGENOM:HOG000001567 HOVERGEN:HBG107811 GO:GO:0071335 GO:GO:0021889 GO:GO:0032290 GO:GO:2000630 GO:GO:0031643 GO:GO:0014040 GO:GO:0070173 GO:GO:0048713 EMBL:AF484523 EMBL:AF484524 EMBL:AB081470 EMBL:AF430845 UniGene:Mm.21135 PDB:3C4B PDB:3C4T PDBsum:3C4B PDBsum:3C4T ProteinModelPortal:Q8R418 SMR:Q8R418 DIP:DIP-29721N IntAct:Q8R418 PhosphoSite:Q8R418 PaxDb:Q8R418 PRIDE:Q8R418 InParanoid:Q8R419 EvolutionaryTrace:Q8R418 PRO:PR:Q8R418 CleanEx:MM_DICER1 Genevestigator:Q8R418 GO:GO:0000212 GO:GO:0008593 Uniprot:Q8R418)

HSP 1 Score: 75.8702 bits (185), Expect = 2.689e-15
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0

Query:   45 PSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            P+  +ILQ LT+ N  D  NLERLE +GDSFLK+AIT+YLF  Y   HEGRLS++RS
Sbjct: 1292 PNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRS 1348

[Close]

BLAST of EMLSAG00000005873 vs. GO
Match: - (symbol:DICER1 "Uncharacterized protein" species:9823 "Sus scrofa" [GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity" evidence=IEA] [GO:0009791 "post-embryonic development" evidence=IEA] [GO:0010070 "zygote asymmetric cell division" evidence=IEA] [GO:0016442 "RISC complex" evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0021522 "spinal cord motor neuron differentiation" evidence=IEA] [GO:0021889 "olfactory bulb interneuron differentiation" evidence=IEA] [GO:0021987 "cerebral cortex development" evidence=IEA] [GO:0030324 "lung development" evidence=IEA] [GO:0030422 "production of siRNA involved in RNA interference" evidence=IEA] [GO:0030423 "targeting of mRNA for destruction involved in RNA interference" evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035264 "multicellular organism growth" evidence=IEA] [GO:0045069 "regulation of viral genome replication" evidence=IEA] [GO:0045664 "regulation of neuron differentiation" evidence=IEA] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA] [GO:0048536 "spleen development" evidence=IEA] [GO:0048713 "regulation of oligodendrocyte differentiation" evidence=IEA] [GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726 "regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac muscle cell development" evidence=IEA] [GO:0060119 "inner ear receptor cell development" evidence=IEA] [GO:0060576 "intestinal epithelial cell development" evidence=IEA] [GO:0070173 "regulation of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle cell proliferation" evidence=IEA] [GO:2000630 "positive regulation of miRNA metabolic process" evidence=IEA] InterPro:IPR000999 InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR027417 SUPFAM:SSF52540 GO:GO:0005524 GO:GO:0010070 GO:GO:0021987 GO:GO:0045664 GO:GO:0051225 GO:GO:0030324 GO:GO:0003725 GO:GO:0006200 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 GO:GO:0060119 GO:GO:0090502 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0060576 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 OrthoDB:EOG78PV82 TreeFam:TF330258 OMA:KSNTDKW GO:GO:0071335 GO:GO:0021889 GO:GO:2000630 GO:GO:0031643 GO:GO:0070173 GO:GO:0048713 EMBL:CU915626 Ensembl:ENSSSCT00000022914 Uniprot:I3L6Y9)

HSP 1 Score: 75.485 bits (184), Expect = 2.876e-15
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0

Query:   45 PSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            P+  +ILQ LT+ N  D  NLERLE +GDSFLK+AIT+YLF  Y   HEGRLS++RS
Sbjct: 1289 PNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRS 1345

[Close]

BLAST of EMLSAG00000005873 vs. GO
Match: - (symbol:Dicer1 "RCG20888" species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity" evidence=IEA] [GO:0009791 "post-embryonic development" evidence=IEA] [GO:0010070 "zygote asymmetric cell division" evidence=IEA] [GO:0016442 "RISC complex" evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0021522 "spinal cord motor neuron differentiation" evidence=IEA] [GO:0021889 "olfactory bulb interneuron differentiation" evidence=IEA] [GO:0021987 "cerebral cortex development" evidence=IEA] [GO:0030324 "lung development" evidence=IEA] [GO:0030422 "production of siRNA involved in RNA interference" evidence=IEA] [GO:0030423 "targeting of mRNA for destruction involved in RNA interference" evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035264 "multicellular organism growth" evidence=IEA] [GO:0045069 "regulation of viral genome replication" evidence=IEA] [GO:0045664 "regulation of neuron differentiation" evidence=IEA] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA] [GO:0048536 "spleen development" evidence=IEA] [GO:0048713 "regulation of oligodendrocyte differentiation" evidence=IEA] [GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726 "regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac muscle cell development" evidence=IEA] [GO:0060119 "inner ear receptor cell development" evidence=IEA] [GO:0060576 "intestinal epithelial cell development" evidence=IEA] [GO:0070173 "regulation of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle cell proliferation" evidence=IEA] [GO:2000630 "positive regulation of miRNA metabolic process" evidence=IEA] InterPro:IPR000999 InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720 RGD:1309381 InterPro:IPR027417 SUPFAM:SSF52540 GO:GO:0005524 GO:GO:0010070 GO:GO:0021987 GO:GO:0030424 GO:GO:0045664 GO:GO:0051225 GO:GO:0030324 GO:GO:0003725 GO:GO:0030425 GO:GO:0006200 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0030426 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 SMART:SM00358 PROSITE:PS50137 GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 GO:GO:0005793 GO:GO:0060119 GO:GO:0090502 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 EMBL:CH473982 GO:GO:0045069 GO:GO:0008026 GO:GO:0060576 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 OrthoDB:EOG78PV82 TreeFam:TF330258 CTD:23405 OMA:KSNTDKW GO:GO:0071335 GO:GO:0021889 GO:GO:2000630 GO:GO:0031643 GO:GO:0070173 GO:GO:0048713 EMBL:AABR06046035 UniGene:Rn.205881 Ensembl:ENSRNOT00000014405 KEGG:rno:299284 NextBio:35575236 Uniprot:E9PU15)

HSP 1 Score: 75.485 bits (184), Expect = 2.957e-15
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0

Query:   45 PSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            P+  +ILQ LT+ N  D  NLERLE +GDSFLK+AIT+YLF  Y   HEGRLS++RS
Sbjct: 1292 PNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRS 1348

[Close]

BLAST of EMLSAG00000005873 vs. GO
Match: - (symbol:Dicer1 "dicer 1, ribonuclease type III" species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0000212 "meiotic spindle organization" evidence=ISO] [GO:0001525 "angiogenesis" evidence=IEA;ISO] [GO:0001932 "regulation of protein phosphorylation" evidence=ISO] [GO:0001942 "hair follicle development" evidence=ISO] [GO:0003674 "molecular_function" evidence=ND] [GO:0003725 "double-stranded RNA binding" evidence=IEA;ISO] [GO:0004525 "ribonuclease III activity" evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA] [GO:0006396 "RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase activity" evidence=IEA] [GO:0008150 "biological_process" evidence=ND] [GO:0008283 "cell proliferation" evidence=ISO] [GO:0009791 "post-embryonic development" evidence=IEA;ISO] [GO:0010070 "zygote asymmetric cell division" evidence=IEA;ISO] [GO:0010468 "regulation of gene expression" evidence=ISO] [GO:0010626 "negative regulation of Schwann cell proliferation" evidence=ISO] [GO:0010628 "positive regulation of gene expression" evidence=ISO] [GO:0014040 "positive regulation of Schwann cell differentiation" evidence=ISO] [GO:0016442 "RISC complex" evidence=IEA;ISO] [GO:0019827 "stem cell maintenance" evidence=IEA;ISO] [GO:0021522 "spinal cord motor neuron differentiation" evidence=IEA;ISO] [GO:0021675 "nerve development" evidence=ISO] [GO:0021889 "olfactory bulb interneuron differentiation" evidence=IEA;ISO] [GO:0021987 "cerebral cortex development" evidence=IEA;ISO] [GO:0030324 "lung development" evidence=IEA;ISO] [GO:0030326 "embryonic limb morphogenesis" evidence=ISO] [GO:0030422 "production of siRNA involved in RNA interference" evidence=IEA;ISO] [GO:0030423 "targeting of mRNA for destruction involved in RNA interference" evidence=IEA;ISO] [GO:0030424 "axon" evidence=IDA] [GO:0030425 "dendrite" evidence=IDA] [GO:0030426 "growth cone" evidence=IDA] [GO:0031054 "pre-miRNA processing" evidence=IEA;ISO] [GO:0031069 "hair follicle morphogenesis" evidence=IEA;ISO] [GO:0031641 "regulation of myelination" evidence=ISO] [GO:0031643 "positive regulation of myelination" evidence=IEA;ISO] [GO:0032290 "peripheral nervous system myelin formation" evidence=ISO] [GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=ISO] [GO:0035198 "miRNA binding" evidence=IEA;ISO] [GO:0035264 "multicellular organism growth" evidence=IEA;ISO] [GO:0042487 "regulation of odontogenesis of dentin-containing tooth" evidence=ISO] [GO:0045069 "regulation of viral genome replication" evidence=IEA;ISO] [GO:0045595 "regulation of cell differentiation" evidence=ISO] [GO:0045664 "regulation of neuron differentiation" evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0048536 "spleen development" evidence=IEA;ISO] [GO:0048565 "digestive tract development" evidence=ISO] [GO:0048713 "regulation of oligodendrocyte differentiation" evidence=IEA;ISO] [GO:0048730 "epidermis morphogenesis" evidence=ISO] [GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IEA;ISO] [GO:0048812 "neuron projection morphogenesis" evidence=ISO] [GO:0048856 "anatomical structure development" evidence=ISO] [GO:0050767 "regulation of neurogenesis" evidence=ISO] [GO:0051225 "spindle assembly" evidence=IEA;ISO] [GO:0051252 "regulation of RNA metabolic process" evidence=ISO] [GO:0051607 "defense response to virus" evidence=IEA;ISO] [GO:0051726 "regulation of cell cycle" evidence=IEA;ISO] [GO:0055013 "cardiac muscle cell development" evidence=IEA;ISO] [GO:0060119 "inner ear receptor cell development" evidence=IEA;ISO] [GO:0060253 "negative regulation of glial cell proliferation" evidence=ISO] [GO:0060576 "intestinal epithelial cell development" evidence=IEA;ISO] [GO:0070173 "regulation of enamel mineralization" evidence=IEA;ISO] [GO:0071335 "hair follicle cell proliferation" evidence=IEA;ISO] [GO:0090501 "RNA phosphodiester bond hydrolysis" evidence=ISO] [GO:0090502 "RNA phosphodiester bond hydrolysis, endonucleolytic" evidence=ISO] [GO:2000628 "regulation of miRNA metabolic process" evidence=ISO] [GO:2000630 "positive regulation of miRNA metabolic process" evidence=IEA;ISO] InterPro:IPR000999 InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720 RGD:1309381 InterPro:IPR027417 SUPFAM:SSF52540 GO:GO:0005524 GO:GO:0010070 GO:GO:0021987 GO:GO:0030424 GO:GO:0045664 GO:GO:0051225 GO:GO:0030324 GO:GO:0003725 GO:GO:0030425 GO:GO:0006200 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0030426 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 SMART:SM00358 PROSITE:PS50137 GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 GO:GO:0005793 GO:GO:0060119 GO:GO:0090502 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 EMBL:CH473982 GO:GO:0045069 GO:GO:0008026 GO:GO:0060576 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 OrthoDB:EOG78PV82 TreeFam:TF330258 CTD:23405 OMA:KSNTDKW GO:GO:0071335 GO:GO:0021889 GO:GO:2000630 GO:GO:0031643 GO:GO:0070173 GO:GO:0048713 EMBL:AABR06046035 UniGene:Rn.205881 Ensembl:ENSRNOT00000014405 KEGG:rno:299284 NextBio:35575236 Uniprot:E9PU15)

HSP 1 Score: 75.485 bits (184), Expect = 2.957e-15
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0

Query:   45 PSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            P+  +ILQ LT+ N  D  NLERLE +GDSFLK+AIT+YLF  Y   HEGRLS++RS
Sbjct: 1292 PNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRS 1348

[Close]

BLAST of EMLSAG00000005873 vs. GO
Match: - (symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity" evidence=IEA] [GO:0016442 "RISC complex" evidence=ISS] [GO:0030422 "production of siRNA involved in RNA interference" evidence=ISS] [GO:0030423 "targeting of mRNA for destruction involved in RNA interference" evidence=ISS] [GO:0031054 "pre-miRNA processing" evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000999 InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720 InterPro:IPR027417 SUPFAM:SSF52540 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872 GO:GO:0006200 Gene3D:3.30.160.20 GO:GO:0003723 SMART:SM00358 PROSITE:PS50137 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 GO:GO:0090502 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1111 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:23405 HOGENOM:HOG000001567 EMBL:AB253768 RefSeq:NP_001035555.1 UniGene:Gga.33735 ProteinModelPortal:Q25BN1 SMR:Q25BN1 PaxDb:Q25BN1 GeneID:423437 KEGG:gga:423437 NextBio:20825910 PRO:PR:Q25BN1 Uniprot:Q25BN1)

HSP 1 Score: 75.485 bits (184), Expect = 2.958e-15
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0

Query:   45 PSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            P+  +ILQ LT+ N  D  NLERLE +GDSFLK+AIT+YLF  Y   HEGRLS++RS
Sbjct: 1293 PNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRS 1349

[Close]

BLAST of EMLSAG00000005873 vs. GO
Match: - (symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus gallus" [GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity" evidence=IEA] [GO:0009791 "post-embryonic development" evidence=IEA] [GO:0010070 "zygote asymmetric cell division" evidence=IEA] [GO:0016442 "RISC complex" evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0021522 "spinal cord motor neuron differentiation" evidence=IEA] [GO:0021889 "olfactory bulb interneuron differentiation" evidence=IEA] [GO:0021987 "cerebral cortex development" evidence=IEA] [GO:0030324 "lung development" evidence=IEA] [GO:0030422 "production of siRNA involved in RNA interference" evidence=IEA] [GO:0030423 "targeting of mRNA for destruction involved in RNA interference" evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035264 "multicellular organism growth" evidence=IEA] [GO:0045069 "regulation of viral genome replication" evidence=IEA] [GO:0045664 "regulation of neuron differentiation" evidence=IEA] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA] [GO:0048536 "spleen development" evidence=IEA] [GO:0048713 "regulation of oligodendrocyte differentiation" evidence=IEA] [GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726 "regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac muscle cell development" evidence=IEA] [GO:0060119 "inner ear receptor cell development" evidence=IEA] [GO:0060576 "intestinal epithelial cell development" evidence=IEA] [GO:0070173 "regulation of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle cell proliferation" evidence=IEA] [GO:2000630 "positive regulation of miRNA metabolic process" evidence=IEA] InterPro:IPR000999 InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720 InterPro:IPR027417 SUPFAM:SSF52540 GO:GO:0005524 GO:GO:0003725 GO:GO:0006200 Gene3D:3.30.160.20 GO:GO:0006396 SMART:SM00358 PROSITE:PS50137 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0030423 GO:GO:0090502 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 OrthoDB:EOG78PV82 EMBL:AADN03004447 Ensembl:ENSGALT00000037569 ArrayExpress:F1NJX0 Uniprot:F1NJX0)

HSP 1 Score: 75.485 bits (184), Expect = 2.986e-15
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0

Query:   45 PSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            P+  +ILQ LT+ N  D  NLERLE +GDSFLK+AIT+YLF  Y   HEGRLS++RS
Sbjct: 1293 PNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRS 1349

[Close]

BLAST of EMLSAG00000005873 vs. GO
Match: - (symbol:dicer1 "Dicer1, Dcr-1 homolog (Drosophila)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA] [GO:0016891 "endoribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity" evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=ISS;IMP] [GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=IMP] [GO:0030422 "production of siRNA involved in RNA interference" evidence=ISS] [GO:0030423 "targeting of mRNA for destruction involved in RNA interference" evidence=ISS] [GO:0016442 "RISC complex" evidence=ISS] [GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA] [GO:0070883 "pre-miRNA binding" evidence=IDA] [GO:0021591 "ventricular system development" evidence=IGI;IMP] [GO:0035279 "mRNA cleavage involved in gene silencing by miRNA" evidence=IGI] [GO:0035195 "gene silencing by miRNA" evidence=IMP] InterPro:IPR000999 InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720 ZFIN:ZDB-GENE-030131-3445 InterPro:IPR027417 SUPFAM:SSF52540 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872 GO:GO:0006200 Gene3D:3.30.160.20 SMART:SM00358 PROSITE:PS50137 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0035279 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 GO:GO:0021591 GO:GO:0090502 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 OrthoDB:EOG78PV82 eggNOG:COG0571 GO:GO:0070883 TreeFam:TF330258 CTD:23405 HOGENOM:HOG000001567 EMBL:AL772219 EMBL:AY386319 RefSeq:NP_001154925.1 RefSeq:XP_005158722.1 RefSeq:XP_005158723.1 UniGene:Dr.78137 Ensembl:ENSDART00000045881 Ensembl:ENSDART00000109826 GeneID:324724 KEGG:dre:324724 InParanoid:Q6TV19 OMA:KSNTDKW NextBio:20808937 PRO:PR:Q6TV19 ArrayExpress:Q6TV19 Bgee:Q6TV19 Uniprot:Q6TV19)

HSP 1 Score: 75.485 bits (184), Expect = 2.996e-15
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0

Query:   45 PSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            P+  +ILQ LT+ N  D  NLERLE +GDSFLK+AIT+YLF  Y   HEGRLS++RS
Sbjct: 1274 PNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRS 1330

[Close]

BLAST of EMLSAG00000005873 vs. C. finmarchicus
Match: gi|592835403|gb|GAXK01122141.1| (TSA: Calanus finmarchicus comp107455_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 100.908 bits (250), Expect = 1.938e-24
Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 0

Query:   33 FDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            FD QPEL SH  PS S+ILQ LTM N  DAINLERLETIGDSFLKYAIT++LF  +   HEG+LSHLRS
Sbjct: 1679 FDQQPELSSHPGPSPSLILQALTMSNSNDAINLERLETIGDSFLKYAITTFLFCQHPNIHEGKLSHLRS 1885

HSP 2 Score: 28.8758 bits (63), Expect = 2.962e+0
Identity = 15/36 (41.67%), Postives = 21/36 (58.33%), Query Frame = 0

Query:   66 ERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            +RLE +GD+ L Y IT +L+        G L+ LRS
Sbjct:  908 QRLEFLGDAVLDYLITRHLYQDPRLHSPGALTDLRS 1015

[Close]

BLAST of EMLSAG00000005873 vs. C. finmarchicus
Match: gi|592860814|gb|GAXK01096748.1| (TSA: Calanus finmarchicus comp55298_c1_seq21 transcribed RNA sequence)

HSP 1 Score: 53.9138 bits (128), Expect = 1.471e-9
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 0

Query:   37 PELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYL-FNVYDTTHEGRLSHLRS 101
             +L S++ PSL   +Q LT+    D  ++ER+E +GD+FLKY+ T +L +N+ DT  EG LS +RS
Sbjct:  152 SKLASNSSPSL---VQALTLSAAGDRWDMERMEILGDAFLKYSTTIFLHYNMADTCDEGDLSTVRS 340

[Close]

BLAST of EMLSAG00000005873 vs. C. finmarchicus
Match: gi|592860820|gb|GAXK01096742.1| (TSA: Calanus finmarchicus comp55298_c1_seq15 transcribed RNA sequence)

HSP 1 Score: 54.299 bits (129), Expect = 9.947e-9
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0

Query:   38 ELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYL-FNVYDTTHEGRLSHLRS 101
            +L S++ PSL   +Q LT+    D  ++ER+E +GD+FLKY+ T +L +N+ DT  EG LS +RS
Sbjct:  155 KLASNSSPSL---VQALTLSAAGDRWDMERMEILGDAFLKYSTTIFLHYNMADTCDEGDLSTVRS 340

[Close]

BLAST of EMLSAG00000005873 vs. C. finmarchicus
Match: gi|592860821|gb|GAXK01096741.1| (TSA: Calanus finmarchicus comp55298_c1_seq14 transcribed RNA sequence)

HSP 1 Score: 54.299 bits (129), Expect = 1.076e-8
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0

Query:   38 ELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYL-FNVYDTTHEGRLSHLRS 101
            +L S++ PSL   +Q LT+    D  ++ER+E +GD+FLKY+ T +L +N+ DT  EG LS +RS
Sbjct:  155 KLASNSSPSL---VQALTLSAAGDRWDMERMEILGDAFLKYSTTIFLHYNMADTCDEGDLSTVRS 340

[Close]

BLAST of EMLSAG00000005873 vs. C. finmarchicus
Match: gi|592860828|gb|GAXK01096734.1| (TSA: Calanus finmarchicus comp55298_c1_seq7 transcribed RNA sequence)

HSP 1 Score: 54.299 bits (129), Expect = 1.335e-8
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0

Query:   38 ELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYL-FNVYDTTHEGRLSHLRS 101
            +L S++ PSL   +Q LT+    D  ++ER+E +GD+FLKY+ T +L +N+ DT  EG LS +RS
Sbjct: 1660 KLASNSSPSL---VQALTLSAAGDRWDMERMEILGDAFLKYSTTIFLHYNMADTCDEGDLSTVRS 1845

[Close]

BLAST of EMLSAG00000005873 vs. C. finmarchicus
Match: gi|592860830|gb|GAXK01096732.1| (TSA: Calanus finmarchicus comp55298_c1_seq5 transcribed RNA sequence)

HSP 1 Score: 54.299 bits (129), Expect = 1.357e-8
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0

Query:   38 ELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYL-FNVYDTTHEGRLSHLRS 101
            +L S++ PSL   +Q LT+    D  ++ER+E +GD+FLKY+ T +L +N+ DT  EG LS +RS
Sbjct: 1660 KLASNSSPSL---VQALTLSAAGDRWDMERMEILGDAFLKYSTTIFLHYNMADTCDEGDLSTVRS 1845

[Close]

BLAST of EMLSAG00000005873 vs. C. finmarchicus
Match: gi|592860823|gb|GAXK01096739.1| (TSA: Calanus finmarchicus comp55298_c1_seq12 transcribed RNA sequence)

HSP 1 Score: 53.1434 bits (126), Expect = 3.228e-8
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0

Query:   38 ELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYL-FNVYDTTHEGRLSHLRS 101
            +L S++ PSL   +Q LT+    D  ++ER+E +GD+FLKY+ T +L +N+ DT  EG LS +RS
Sbjct: 1660 KLASNSSPSL---VQALTLSAAGDRWDMERMEILGDAFLKYSTTIFLHYNMADTCDEGDLSTVRS 1845

[Close]

BLAST of EMLSAG00000005873 vs. C. finmarchicus
Match: gi|592860832|gb|GAXK01096730.1| (TSA: Calanus finmarchicus comp55298_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 51.6026 bits (122), Expect = 1.033e-7
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 0

Query:   38 ELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYL-FNVYDTTHEGRLSHLRS 101
            +L S++ PS   ++Q L +    D  ++ER+  +GD+FLKY+ T +L +N+ DT  EG LS +RS
Sbjct: 2077 KLTSNSSPSPGQMVQSLALSTAGDRWDMERMGILGDAFLKYSTTIFLHYNMADTCDEGDLSTVRS 2271

[Close]

BLAST of EMLSAG00000005873 vs. C. finmarchicus
Match: gi|592860834|gb|GAXK01096728.1| (TSA: Calanus finmarchicus comp55298_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 51.6026 bits (122), Expect = 1.044e-7
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 0

Query:   38 ELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYL-FNVYDTTHEGRLSHLRS 101
            +L S++ PS   ++Q L +    D  ++ER+  +GD+FLKY+ T +L +N+ DT  EG LS +RS
Sbjct: 2077 KLTSNSSPSPGQMVQSLALSTAGDRWDMERMGILGDAFLKYSTTIFLHYNMADTCDEGDLSTVRS 2271

[Close]

BLAST of EMLSAG00000005873 vs. C. finmarchicus
Match: gi|592860825|gb|GAXK01096737.1| (TSA: Calanus finmarchicus comp55298_c1_seq10 transcribed RNA sequence)

HSP 1 Score: 50.8322 bits (120), Expect = 1.778e-7
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 0

Query:   38 ELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYL-FNVYDTTHEGRLSHLRS 101
            +L S++ PS   ++Q L +    D  ++ER+  +GD+FLKY+ T +L +N+ DT  EG LS +RS
Sbjct: 2077 KLTSNSSPSPGQMVQSLALSTAGDRWDMERMGILGDAFLKYSTTIFLHYNMADTCDEGDLSTVRS 2271

[Close]

BLAST of EMLSAG00000005873 vs. L. salmonis peptides
Match: EMLSAP00000005873 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3186:5073:7294:-1 gene:EMLSAG00000005873 transcript:EMLSAT00000005873 description:"snap-LSalAtl2s3186-processed-gene-0.17")

HSP 1 Score: 207.608 bits (527), Expect = 2.292e-70
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query:    1 MVDILLDRFMNPLTPSAIELSPSYNKTVMSLCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            MVDILLDRFMNPLTPSAIELSPSYNKTVMSLCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS
Sbjct:    1 MVDILLDRFMNPLTPSAIELSPSYNKTVMSLCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101

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BLAST of EMLSAG00000005873 vs. L. salmonis peptides
Match: EMLSAP00000004598 (pep:novel supercontig:LSalAtl2s:LSalAtl2s23:370173:379428:1 gene:EMLSAG00000004598 transcript:EMLSAT00000004598 description:"maker-LSalAtl2s23-augustus-gene-3.18")

HSP 1 Score: 129.028 bits (323), Expect = 3.272e-35
Identity = 64/80 (80.00%), Postives = 65/80 (81.25%), Query Frame = 0

Query:   22 PSYNKTVMSLCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            P  +   MS  FDHQPELVSH  PS SIILQGLTM N  DAINLERLETIGDSFLKYAI SYLFNVYDT HEGRLSHLRS
Sbjct: 1573 PRDSDEEMSFSFDHQPELVSHPGPSPSIILQGLTMSNSNDAINLERLETIGDSFLKYAIXSYLFNVYDTVHEGRLSHLRS 1652

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BLAST of EMLSAG00000005873 vs. SwissProt
Match: gi|51316117|sp|Q9VCU9.1|DCR1_DROME (RecName: Full=Endoribonuclease Dcr-1; Short=Protein dicer-1)

HSP 1 Score: 104.76 bits (260), Expect = 1.867e-26
Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 0

Query:   33 FDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            FD QP+LV H  PS SIILQ LTM N  D INLERLETIGDSFLKYAIT+YL+  Y+  HEG+LSHLRS
Sbjct: 1709 FDRQPDLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRS 1777

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BLAST of EMLSAG00000005873 vs. SwissProt
Match: gi|257051055|sp|A0MQH0.3|DICER_CRIGR (RecName: Full=Endoribonuclease Dicer)

HSP 1 Score: 75.8702 bits (185), Expect = 2.553e-16
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0

Query:   45 PSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            P+  +ILQ LT+ N  D  NLERLE +GDSFLK+AIT+YLF  Y   HEGRLS++RS
Sbjct: 1292 PNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRS 1348

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BLAST of EMLSAG00000005873 vs. SwissProt
Match: gi|257051057|sp|Q8R418.3|DICER_MOUSE (RecName: Full=Endoribonuclease Dicer; AltName: Full=Double-strand-specific ribonuclease mDCR-1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.603e-16
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0

Query:   45 PSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            P+  +ILQ LT+ N  D  NLERLE +GDSFLK+AIT+YLF  Y   HEGRLS++RS
Sbjct: 1292 PNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRS 1348

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BLAST of EMLSAG00000005873 vs. SwissProt
Match: gi|257051054|sp|Q25BN1.3|DICER_CHICK (RecName: Full=Endoribonuclease Dicer)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-16
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0

Query:   45 PSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            P+  +ILQ LT+ N  D  NLERLE +GDSFLK+AIT+YLF  Y   HEGRLS++RS
Sbjct: 1293 PNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRS 1349

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BLAST of EMLSAG00000005873 vs. SwissProt
Match: gi|229485378|sp|Q6TV19.2|DICER_DANRE (RecName: Full=Endoribonuclease Dicer)

HSP 1 Score: 75.485 bits (184), Expect = 2.923e-16
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0

Query:   45 PSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            P+  +ILQ LT+ N  D  NLERLE +GDSFLK+AIT+YLF  Y   HEGRLS++RS
Sbjct: 1274 PNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRS 1330

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BLAST of EMLSAG00000005873 vs. SwissProt
Match: gi|257051056|sp|Q9UPY3.3|DICER_HUMAN (RecName: Full=Endoribonuclease Dicer; AltName: Full=Helicase with RNase motif; Short=Helicase MOI)

HSP 1 Score: 75.485 bits (184), Expect = 3.041e-16
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0

Query:   45 PSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            P+  +ILQ LT+ N  D  NLERLE +GDSFLK+AIT+YLF  Y   HEGRLS++RS
Sbjct: 1292 PNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRS 1348

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BLAST of EMLSAG00000005873 vs. SwissProt
Match: gi|238064965|sp|B3DLA6.2|DICER_XENTR (RecName: Full=Endoribonuclease Dicer)

HSP 1 Score: 75.485 bits (184), Expect = 3.318e-16
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0

Query:   45 PSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            P+  +ILQ LT+ N  D  NLERLE +GDSFLK+AIT+YLF  Y   HEGRLS++RS
Sbjct: 1269 PNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRS 1325

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BLAST of EMLSAG00000005873 vs. SwissProt
Match: gi|408360292|sp|P34529.3|DCR1_CAEEL (RecName: Full=Endoribonuclease dcr-1)

HSP 1 Score: 63.1586 bits (152), Expect = 6.470e-12
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 0

Query:   38 ELVSHTDPSLSI------ILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            E VSH D  + +      +L  LT  N  D ++LER ETIGDSFLK+A T YL++     HEG+LS  RS
Sbjct: 1379 EYVSHIDSDIGLGVSPCLLLTALTTSNAADGMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARS 1448

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BLAST of EMLSAG00000005873 vs. SwissProt
Match: gi|257051053|sp|Q6TUI4.3|DICER_BOVIN (RecName: Full=Endoribonuclease Dicer)

HSP 1 Score: 60.4622 bits (145), Expect = 5.248e-11
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0

Query:   45 PSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSY-LFNVYDTTHEGRLSHLRS 101
            P+  +ILQ LT+ N  D  NLERLE +GDSFLK+AIT+  L  +    HEGRLS++RS
Sbjct: 1292 PNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRS 1349

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BLAST of EMLSAG00000005873 vs. SwissProt
Match: gi|251764670|sp|A7LFZ6.1|DCL4_ORYSJ (RecName: Full=Endoribonuclease Dicer homolog 4; AltName: Full=Dicer-like protein 4; Short=OsDCL4; AltName: Full=Protein SHOOT ORGANIZATION 1)

HSP 1 Score: 55.0694 bits (131), Expect = 4.519e-9
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 0

Query:   46 SLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            S S IL+ LT   C++ I+LER E +GD+FLKY +  + F  Y+   EG+L+  RS
Sbjct: 1023 SASGILEALTTEKCLERISLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRS 1078

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BLAST of EMLSAG00000005873 vs. Select Arthropod Genomes
Match: EGK96757.1 (AGAP002836-PB [Anopheles gambiae str. PEST])

HSP 1 Score: 105.531 bits (262), Expect = 3.964e-27
Identity = 49/69 (71.01%), Postives = 55/69 (79.71%), Query Frame = 0

Query:   33 FDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            FD+QP+L  H  PS +IILQ LTM N  D INLERLETIGDSFLKYAIT+YL+  YD  HEG+LSHLRS
Sbjct: 1730 FDYQPDLSQHPGPSPAIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRS 1798

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BLAST of EMLSAG00000005873 vs. Select Arthropod Genomes
Match: EAA07793.2 (AGAP002836-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 105.531 bits (262), Expect = 4.039e-27
Identity = 49/69 (71.01%), Postives = 55/69 (79.71%), Query Frame = 0

Query:   33 FDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            FD+QP+L  H  PS +IILQ LTM N  D INLERLETIGDSFLKYAIT+YL+  YD  HEG+LSHLRS
Sbjct: 1650 FDYQPDLSQHPGPSPAIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRS 1718

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BLAST of EMLSAG00000005873 vs. Select Arthropod Genomes
Match: AAF56056.1 (Dicer-1 [Drosophila melanogaster])

HSP 1 Score: 104.76 bits (260), Expect = 9.047e-27
Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 0

Query:   33 FDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            FD QP+LV H  PS SIILQ LTM N  D INLERLETIGDSFLKYAIT+YL+  Y+  HEG+LSHLRS
Sbjct: 1709 FDRQPDLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRS 1777

[Close]

BLAST of EMLSAG00000005873 vs. Select Arthropod Genomes
Match: gb|EFA11550.2| (dicer-1 [Tribolium castaneum])

HSP 1 Score: 103.99 bits (258), Expect = 1.567e-26
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 0

Query:   29 MSLCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            M+  FD QP LV H  PS +++LQ LTM N  D INLERLETIGDSFLKYAIT+YL++ Y+  HEG+LSHLRS
Sbjct: 1329 MTFKFDEQPNLVEHPGPSPNVLLQALTMSNANDGINLERLETIGDSFLKYAITNYLYSKYENVHEGKLSHLRS 1401

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BLAST of EMLSAG00000005873 vs. Select Arthropod Genomes
Match: EEB16756.1 (dicer-1, putative [Pediculus humanus corporis])

HSP 1 Score: 103.219 bits (256), Expect = 2.582e-26
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 0

Query:   15 PSAIELSPSYNKTVMSLCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            PS  +     ++      FD QP+L  H  PS S+ILQ LTM N  D INLERLETIGDSFLKYAIT+YL+ +Y+  HEG+LSHLRS
Sbjct: 1607 PSNYKPFEEIDEICQKFSFDEQPDLSGHPGPSPSLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCIYENVHEGKLSHLRS 1693

[Close]

BLAST of EMLSAG00000005873 vs. Select Arthropod Genomes
Match: XP_016767546.1 (PREDICTED: endoribonuclease Dicer-1 isoform X1 [Apis mellifera])

HSP 1 Score: 102.449 bits (254), Expect = 4.987e-26
Identity = 49/69 (71.01%), Postives = 55/69 (79.71%), Query Frame = 0

Query:   33 FDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            FD QP+L +H  PS S+ILQ LTM N  D INLERLETIGDSFLKYAIT+YL+  YD  HEG+LSHLRS
Sbjct: 1403 FDFQPKLENHPGPSPSLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRS 1471

[Close]

BLAST of EMLSAG00000005873 vs. Select Arthropod Genomes
Match: NP_001116485.2 (endoribonuclease Dicer-1 [Apis mellifera])

HSP 1 Score: 102.449 bits (254), Expect = 4.987e-26
Identity = 49/69 (71.01%), Postives = 55/69 (79.71%), Query Frame = 0

Query:   33 FDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            FD QP+L +H  PS S+ILQ LTM N  D INLERLETIGDSFLKYAIT+YL+  YD  HEG+LSHLRS
Sbjct: 1403 FDFQPKLENHPGPSPSLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRS 1471

[Close]

BLAST of EMLSAG00000005873 vs. Select Arthropod Genomes
Match: gb|EEC02010.1| (dicer-1, putative [Ixodes scapularis])

HSP 1 Score: 97.8265 bits (242), Expect = 2.188e-24
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0

Query:   33 FDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            FD +P+L SH+ PS SI+LQ LTM N  D INLERLET+GDSFLKYA+T++L+  + + HEG+LSHLRS
Sbjct: 1536 FDERPDLSSHSGPSPSILLQALTMSNANDGINLERLETVGDSFLKYAVTAHLYCTHPSVHEGKLSHLRS 1604

[Close]

BLAST of EMLSAG00000005873 vs. Select Arthropod Genomes
Match: gb|KFM83630.1| (Endoribonuclease Dcr-1, partial [Stegodyphus mimosarum])

HSP 1 Score: 97.4413 bits (241), Expect = 2.775e-24
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 0

Query:   24 YNKTVMSLCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            Y+  ++ + FD  P+L  H  PS SIILQ LTM N  D INLERLET+GDSFLKYAIT YLF +Y   HEG+LS+LRS
Sbjct:  538 YDDNMLRVNFDDCPDLSKHPGPSPSIILQALTMSNANDGINLERLETVGDSFLKYAITVYLFCMYPNIHEGKLSYLRS 615

[Close]

BLAST of EMLSAG00000005873 vs. Select Arthropod Genomes
Match: EFX72380.1 (hypothetical protein DAPPUDRAFT_308316 [Daphnia pulex])

HSP 1 Score: 93.5893 bits (231), Expect = 8.023e-23
Identity = 46/69 (66.67%), Postives = 51/69 (73.91%), Query Frame = 0

Query:   33 FDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            FD Q  L SH  PS S+ILQ  TM +  D INLERLETIGDSFLKYAIT+YL+  Y + HEG LSHLRS
Sbjct: 1225 FDEQQGLESHPGPSPSVILQAFTMSSANDGINLERLETIGDSFLKYAITTYLYCKYSSIHEGELSHLRS 1293

[Close]

BLAST of EMLSAG00000005873 vs. nr
Match: gi|156553056|ref|XP_001605287.1| (PREDICTED: endoribonuclease Dcr-1 [Nasonia vitripennis])

HSP 1 Score: 112.079 bits (279), Expect = 1.224e-26
Identity = 58/92 (63.04%), Postives = 67/92 (72.83%), Query Frame = 0

Query:   11 NPLTPSAI-ELSPSYNKTVMSLCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            N   P+ + +L P YNK   S  FD+QPEL  H+ PS S+ILQ LTM N  D INLERLETIGDSFLKYAIT+YLF  Y+  HEG+LSHLRS
Sbjct: 1341 NKQGPAELTKLVPKYNKG--SFSFDYQPELDGHSGPSPSLILQALTMSNANDGINLERLETIGDSFLKYAITTYLFCTYNNIHEGKLSHLRS 1430

[Close]

BLAST of EMLSAG00000005873 vs. nr
Match: gi|1134488053|gb|JAV33562.1| (putative dsrna-specific nuclease dicer [Culex tarsalis])

HSP 1 Score: 111.309 bits (277), Expect = 2.286e-26
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 0

Query:   12 PLTPSAIELSPSYNKTVMSLCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            PLT S + + PS N +     FD+QP+L +H  PS SIILQ LTM N  D INLERLETIGDSFLKYAIT+YL+  Y+  HEG+LSHLRS
Sbjct: 1594 PLTISTVTV-PSVNDSSEEFSFDYQPDLTNHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRS 1682

[Close]

BLAST of EMLSAG00000005873 vs. nr
Match: gi|1134488071|gb|JAV33571.1| (putative dsrna-specific nuclease dicer [Culex tarsalis])

HSP 1 Score: 111.309 bits (277), Expect = 2.286e-26
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 0

Query:   12 PLTPSAIELSPSYNKTVMSLCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            PLT S + + PS N +     FD+QP+L +H  PS SIILQ LTM N  D INLERLETIGDSFLKYAIT+YL+  Y+  HEG+LSHLRS
Sbjct: 1595 PLTISTVTV-PSVNDSSEEFSFDYQPDLTNHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRS 1683

[Close]

BLAST of EMLSAG00000005873 vs. nr
Match: gi|1059867710|ref|XP_017788557.1| (PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dcr-1 [Habropoda laboriosa])

HSP 1 Score: 110.538 bits (275), Expect = 4.287e-26
Identity = 57/110 (51.82%), Postives = 73/110 (66.36%), Query Frame = 0

Query:    2 VDILLDRFMNPLTPSAIELSPSYNKTVMS----------LCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            ++ ++++F N +  +   L P+ NK+  S            FD+QPEL +H  PS S+ILQ LTM N  D INLERLETIGDSFLKYAIT+YL+  YD  HEG+LSHLRS
Sbjct: 1373 IETIVNKFTNEILNNNDSLHPTKNKSNKSEFTYHSDSNLFSFDYQPELENHPGPSPSLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRS 1482

[Close]

BLAST of EMLSAG00000005873 vs. nr
Match: gi|915664570|gb|KOC66705.1| (Endoribonuclease Dicer [Habropoda laboriosa])

HSP 1 Score: 110.153 bits (274), Expect = 5.297e-26
Identity = 57/110 (51.82%), Postives = 73/110 (66.36%), Query Frame = 0

Query:    2 VDILLDRFMNPLTPSAIELSPSYNKTVMS----------LCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            ++ ++++F N +  +   L P+ NK+  S            FD+QPEL +H  PS S+ILQ LTM N  D INLERLETIGDSFLKYAIT+YL+  YD  HEG+LSHLRS
Sbjct: 1198 IETIVNKFTNEILNNNDSLHPTKNKSNKSEFTYHSDSNLFSFDYQPELENHPGPSPSLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRS 1307

[Close]

BLAST of EMLSAG00000005873 vs. nr
Match: gi|939655662|ref|XP_014296868.1| (PREDICTED: endoribonuclease Dcr-1 isoform X2 [Microplitis demolitor])

HSP 1 Score: 109.383 bits (272), Expect = 1.141e-25
Identity = 55/82 (67.07%), Postives = 61/82 (74.39%), Query Frame = 0

Query:   21 SPS-YNKTVMSLCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            +PS YN    S  FDHQPEL  +  PS S+ILQ LTM N  D INLERLETIGDSFLKYAIT+YL+  YD  HEG+LSHLRS
Sbjct: 1235 TPSLYNDNDTSFSFDHQPELRGNPGPSPSLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDVIHEGKLSHLRS 1316

[Close]

BLAST of EMLSAG00000005873 vs. nr
Match: gi|939655652|ref|XP_014296866.1| (PREDICTED: endoribonuclease Dcr-1 isoform X1 [Microplitis demolitor] >gi|939655656|ref|XP_014296867.1| PREDICTED: endoribonuclease Dcr-1 isoform X1 [Microplitis demolitor])

HSP 1 Score: 108.997 bits (271), Expect = 1.260e-25
Identity = 55/82 (67.07%), Postives = 61/82 (74.39%), Query Frame = 0

Query:   21 SPS-YNKTVMSLCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            +PS YN    S  FDHQPEL  +  PS S+ILQ LTM N  D INLERLETIGDSFLKYAIT+YL+  YD  HEG+LSHLRS
Sbjct: 1389 TPSLYNDNDTSFSFDHQPELRGNPGPSPSLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDVIHEGKLSHLRS 1470

[Close]

BLAST of EMLSAG00000005873 vs. nr
Match: gi|170033786|ref|XP_001844757.1| (endoribonuclease Dcr-1 [Culex quinquefasciatus] >gi|167874834|gb|EDS38217.1| endoribonuclease Dcr-1 [Culex quinquefasciatus])

HSP 1 Score: 108.997 bits (271), Expect = 1.566e-25
Identity = 52/87 (59.77%), Postives = 64/87 (73.56%), Query Frame = 0

Query:   15 PSAIELSPSYNKTVMSLCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            PS   ++ + N ++    FD+QP+L +H  PS SIILQ LTM N  D INLERLETIGDSFLKYAIT+YL+  Y+  HEG+LSHLRS
Sbjct: 1699 PSVPNVATAINGSLGEFSFDYQPDLTNHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRS 1785

[Close]

BLAST of EMLSAG00000005873 vs. nr
Match: gi|195391256|ref|XP_002054279.1| (uncharacterized protein Dvir_GJ24359 [Drosophila virilis] >gi|194152365|gb|EDW67799.1| uncharacterized protein Dvir_GJ24359 [Drosophila virilis])

HSP 1 Score: 108.227 bits (269), Expect = 2.750e-25
Identity = 51/72 (70.83%), Postives = 57/72 (79.17%), Query Frame = 0

Query:   30 SLCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            +  FDHQP+LV H  PS SIILQ LTM N  D INLERLETIGDSFLKYAIT+YL+  Y+  HEG+LSHLRS
Sbjct: 1700 AFSFDHQPDLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRS 1771

[Close]

BLAST of EMLSAG00000005873 vs. nr
Match: gi|195037032|ref|XP_001989969.1| (GH18503 [Drosophila grimshawi] >gi|193894165|gb|EDV93031.1| GH18503 [Drosophila grimshawi])

HSP 1 Score: 108.227 bits (269), Expect = 2.915e-25
Identity = 55/90 (61.11%), Postives = 63/90 (70.00%), Query Frame = 0

Query:   12 PLTPSAIELSPSYNKTVMSLCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
            P      + SPS   ++    FD+QPELV H  PS SIILQ LTM N  D INLERLETIGDSFLKYAIT+YL+  Y+  HEG+LSHLRS
Sbjct: 1688 PAVTETEKASPS--ASISDFNFDYQPELVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYMTYENVHEGKLSHLRS 1775

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BLAST of EMLSAG00000005873 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold117_size339417-processed-gene-2.5 (protein:Tk06389 transcript:snap_masked-scaffold117_size339417-processed-gene-2.5-mRNA-1 annotation:"endoribonuclease dcr-1")

HSP 1 Score: 98.5969 bits (244), Expect = 1.012e-25
Identity = 50/73 (68.49%), Postives = 54/73 (73.97%), Query Frame = 0

Query:   29 MSLCFDHQPELVSHTDPSLSIILQGLTMPNCIDAINLERLETIGDSFLKYAITSYLFNVYDTTHEGRLSHLRS 101
                FD+QP+L +   PS S+ILQ LTM N  DAINLERLETIGDSFLKYAITS LF  Y  T EGRLSHLRS
Sbjct: 1411 FGFSFDYQPDLATFPGPSPSLILQALTMSNANDAINLERLETIGDSFLKYAITSALFLAYPDTPEGRLSHLRS 1483

The following BLAST results are available for this feature:

BLAST of EMLSAG00000005873 vs. GO
BLAST of EMLSAG00000005873 vs. C. finmarchicus
BLAST of EMLSAG00000005873 vs. L. salmonis peptides
BLAST of EMLSAG00000005873 vs. SwissProt
BLAST of EMLSAG00000005873 vs. Select Arthropod Genomes
BLAST of EMLSAG00000005873 vs. nr
BLAST of EMLSAG00000005873 vs. Tigriopus kingsejongenis genes

BLAST of EMLSAG00000005873 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 24


Match Name	E-value	Identity	Description
-	3.049e-25	72.46	symbol:Dcr-1 "Dicer-1" species:7227 "Drosophila me...	[more]
-	2.054e-15	61.40	symbol:DICER1 "Endoribonuclease Dicer" species:960...	[more]
-	2.639e-15	61.40	symbol:DICER1 "Endoribonuclease Dicer" species:100...	[more]
-	2.689e-15	61.40	symbol:Dicer1 "dicer 1, ribonuclease type III" spe...	[more]
-	2.876e-15	61.40	symbol:DICER1 "Uncharacterized protein" species:98...	[more]
-	2.957e-15	61.40	symbol:Dicer1 "RCG20888" species:10116 "Rattus nor...	[more]
-	2.957e-15	61.40	symbol:Dicer1 "dicer 1, ribonuclease type III" spe...	[more]
-	2.958e-15	61.40	symbol:DICER1 "Endoribonuclease Dicer" species:903...	[more]
-	2.986e-15	61.40	symbol:DICER1 "Endoribonuclease Dicer" species:903...	[more]
-	2.996e-15	61.40	symbol:dicer1 "Dicer1, Dcr-1 homolog (Drosophila)"...	[more]

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BLAST of EMLSAG00000005873 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|592835403\|gb\|GAXK01122141.1\|	1.938e-24	72.46	TSA: Calanus finmarchicus comp107455_c1_seq1 trans...	[more]
gi\|592860814\|gb\|GAXK01096748.1\|	1.471e-9	43.94	TSA: Calanus finmarchicus comp55298_c1_seq21 trans...	[more]
gi\|592860820\|gb\|GAXK01096742.1\|	9.947e-9	44.62	TSA: Calanus finmarchicus comp55298_c1_seq15 trans...	[more]
gi\|592860821\|gb\|GAXK01096741.1\|	1.076e-8	44.62	TSA: Calanus finmarchicus comp55298_c1_seq14 trans...	[more]
gi\|592860828\|gb\|GAXK01096734.1\|	1.335e-8	44.62	TSA: Calanus finmarchicus comp55298_c1_seq7 transc...	[more]
gi\|592860830\|gb\|GAXK01096732.1\|	1.357e-8	44.62	TSA: Calanus finmarchicus comp55298_c1_seq5 transc...	[more]
gi\|592860823\|gb\|GAXK01096739.1\|	3.228e-8	44.62	TSA: Calanus finmarchicus comp55298_c1_seq12 trans...	[more]
gi\|592860832\|gb\|GAXK01096730.1\|	1.033e-7	40.00	TSA: Calanus finmarchicus comp55298_c1_seq3 transc...	[more]
gi\|592860834\|gb\|GAXK01096728.1\|	1.044e-7	40.00	TSA: Calanus finmarchicus comp55298_c1_seq1 transc...	[more]
gi\|592860825\|gb\|GAXK01096737.1\|	1.778e-7	40.00	TSA: Calanus finmarchicus comp55298_c1_seq10 trans...	[more]

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BLAST of EMLSAG00000005873 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2


Match Name	E-value	Identity	Description
EMLSAP00000005873	2.292e-70	100.00	pep:novel supercontig:LSalAtl2s:LSalAtl2s3186:5073...	[more]
EMLSAP00000004598	3.272e-35	80.00	pep:novel supercontig:LSalAtl2s:LSalAtl2s23:370173...	[more]

BLAST of EMLSAG00000005873 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 18


Match Name	E-value	Identity	Description
gi\|51316117\|sp\|Q9VCU9.1\|DCR1_DROME	1.867e-26	72.46	RecName: Full=Endoribonuclease Dcr-1; Short=Protei...	[more]
gi\|257051055\|sp\|A0MQH0.3\|DICER_CRIGR	2.553e-16	61.40	RecName: Full=Endoribonuclease Dicer	[more]
gi\|257051057\|sp\|Q8R418.3\|DICER_MOUSE	2.603e-16	61.40	RecName: Full=Endoribonuclease Dicer; AltName: Ful...	[more]
gi\|257051054\|sp\|Q25BN1.3\|DICER_CHICK	2.869e-16	61.40	RecName: Full=Endoribonuclease Dicer	[more]
gi\|229485378\|sp\|Q6TV19.2\|DICER_DANRE	2.923e-16	61.40	RecName: Full=Endoribonuclease Dicer	[more]
gi\|257051056\|sp\|Q9UPY3.3\|DICER_HUMAN	3.041e-16	61.40	RecName: Full=Endoribonuclease Dicer; AltName: Ful...	[more]
gi\|238064965\|sp\|B3DLA6.2\|DICER_XENTR	3.318e-16	61.40	RecName: Full=Endoribonuclease Dicer	[more]
gi\|408360292\|sp\|P34529.3\|DCR1_CAEEL	6.470e-12	47.14	RecName: Full=Endoribonuclease dcr-1	[more]
gi\|257051053\|sp\|Q6TUI4.3\|DICER_BOVIN	5.248e-11	55.17	RecName: Full=Endoribonuclease Dicer	[more]
gi\|251764670\|sp\|A7LFZ6.1\|DCL4_ORYSJ	4.519e-9	44.64	RecName: Full=Endoribonuclease Dicer homolog 4; Al...	[more]

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BLAST of EMLSAG00000005873 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 16


Match Name	E-value	Identity	Description
EGK96757.1	3.964e-27	71.01	AGAP002836-PB [Anopheles gambiae str. PEST]	[more]
EAA07793.2	4.039e-27	71.01	AGAP002836-PA [Anopheles gambiae str. PEST]	[more]
AAF56056.1	9.047e-27	72.46	Dicer-1 [Drosophila melanogaster]	[more]
gb\|EFA11550.2\|	1.567e-26	65.75	dicer-1 [Tribolium castaneum]	[more]
EEB16756.1	2.582e-26	57.47	dicer-1, putative [Pediculus humanus corporis]	[more]
XP_016767546.1	4.987e-26	71.01	PREDICTED: endoribonuclease Dicer-1 isoform X1 [Ap...	[more]
NP_001116485.2	4.987e-26	71.01	endoribonuclease Dicer-1 [Apis mellifera]	[more]
gb\|EEC02010.1\|	2.188e-24	63.77	dicer-1, putative [Ixodes scapularis]	[more]
gb\|KFM83630.1\|	2.775e-24	61.54	Endoribonuclease Dcr-1, partial [Stegodyphus mimos...	[more]
EFX72380.1	8.023e-23	66.67	hypothetical protein DAPPUDRAFT_308316 [Daphnia pu...	[more]

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BLAST of EMLSAG00000005873 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25


Match Name	E-value	Identity	Description
gi\|156553056\|ref\|XP_001605287.1\|	1.224e-26	63.04	PREDICTED: endoribonuclease Dcr-1 [Nasonia vitripe...	[more]
gi\|1134488053\|gb\|JAV33562.1\|	2.286e-26	62.22	putative dsrna-specific nuclease dicer [Culex tars...	[more]
gi\|1134488071\|gb\|JAV33571.1\|	2.286e-26	62.22	putative dsrna-specific nuclease dicer [Culex tars...	[more]
gi\|1059867710\|ref\|XP_017788557.1\|	4.287e-26	51.82	PREDICTED: LOW QUALITY PROTEIN: endoribonuclease D...	[more]
gi\|915664570\|gb\|KOC66705.1\|	5.297e-26	51.82	Endoribonuclease Dicer [Habropoda laboriosa]	[more]
gi\|939655662\|ref\|XP_014296868.1\|	1.141e-25	67.07	PREDICTED: endoribonuclease Dcr-1 isoform X2 [Micr...	[more]
gi\|939655652\|ref\|XP_014296866.1\|	1.260e-25	67.07	PREDICTED: endoribonuclease Dcr-1 isoform X1 [Micr...	[more]
gi\|170033786\|ref\|XP_001844757.1\|	1.566e-25	59.77	endoribonuclease Dcr-1 [Culex quinquefasciatus] >g...	[more]
gi\|195391256\|ref\|XP_002054279.1\|	2.750e-25	70.83	uncharacterized protein Dvir_GJ24359 [Drosophila v...	[more]
gi\|195037032\|ref\|XP_001989969.1\|	2.915e-25	61.11	GH18503 [Drosophila grimshawi] >gi\|193894165\|gb\|ED...	[more]

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BLAST of EMLSAG00000005873 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1


Match Name	E-value	Identity	Description
snap_masked-scaffold117_size339417-processed-gene-2.5	1.012e-25	68.49	protein:Tk06389 transcript:snap_masked-scaffold117...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s3186	supercontig	LSalAtl2s3186:5073..7294 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016
Blast vs. GO	2014-04-02
TblastN vs C. finmarchicus TSA	2014-05-09
Blastp vs. self	2014-05-10
Blastp vs. SwissProt	2017-02-10
Blastp vs. Selected Arthropods	2017-02-20
Blastp vs. NR (2/2017)	2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins	2018-04-18

Properties


Property Name	Value
Logic name	ensemblgenomes
Description	snap-LSalAtl2s3186-processed-gene-0.17
Biotype	protein_coding
Evidence	IEA
Note	Endoribonuclease Dcr-1

Cross References

External references for this gene


Database	Accession
Ensembl Metazoa (gene)	EMLSAG00000005873 (primary cross-reference)

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
EMLSAT00000005873	EMLSAT00000005873-701720	Lepeophtheirus salmonis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at LSalAtl2s3186:5073..7294-

gene from alignment at LSalAtl2s3186:5073..7294-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAG00000005873-688639 ID=EMLSAG00000005873-688639|Name=EMLSAG00000005873|organism=Lepeophtheirus salmonis|type=gene|length=2222bp|location=Sequence derived from alignment at LSalAtl2s3186:5073..7294- (Lepeophtheirus salmonis)
ATGGTAGATATTTTATTAGACCGTTTCATGAATCCACTAACACCATCAGG
TGCTAAAAATATTCCACCTACATTCTTGCCTTAATGAAATGTTGTGTAGT
GTCAACATATCTAAATACTATGAAAAGGCGAATTTCATAAAGGGAAGAAA
GTAATGAGCTGATGAAAAATTTAACCTTTTCTTATTGAACACTTTTTGCT
TATTTAAAAAAGTATTAGTGTATGTTGAAACAAAAGGGTAATGAATGAAT
TATTTTAGAGAAACATGTAATAACCGATGACCGTATACTGTATAGGGAAA
GCCTATATTGTGCAAAAAAAAATGTTTCCACATTATATAATATTTTTAAA
CCCTTTATTAGCTATTGAATTATCGCCAAGTTATAATAAAGTATATAAAT
ATAATAATATAATATTAGAAAGTATGAAATAAATACTATTTTAATATTTT
ATGGAAAATTAGAGGACTGACAAAAGTCAATCTCAAGAACAGACAGTCGT
AAGGAACGATCCACAGGACCGACCCCAAAGATTGACAGTCCTAAGGACCC
ATGGTCCTAAGACTGGACCGGACCCAATAAATTGTGACCGGKACAACACT
AATCCAGTTGCACAACCAAGTATGAAATTGATTTATGGTACTGCTCTGGA
ATTAGCAATGCAAAGACATGAAGAATCAACTTTGGTGTCAGGGTATTACA
TGTAAAAAAATGCTGATGTAGTAGAATCCGCAATACAATAACCCTGTGGA
TTACTACACAGCAAGTTACCAAATCATGACTTGCAGATGGCCTAAACAGG
GGTCTACTAATTTACTTTTTATAGTAGAATCCGCAATACAATAACCCTGC
GGATTACTACACAGCAAGTTACCAAATCATGACTTGCAGATGGCCTAAAC
AGGGGTCTACTAATTTACTTTTTATATTTGATGACGTAGTTACCGGAGTT
ATGGCGATCTAATGTTTCTTTGTCAAATTAAAAAACTTGTCGATACTCAA
TTCTGAGGAACTATGGTATGTTCTGTTTGTTGTAAGGACACTCTACAGTT
TGAACGTAACGGGAGTAGATTTAATGTAACTCTTTTTGAACTCTCTTGCC
CAACGTTAAGCCCTCCTTCTATATTCAATTTGATCTTCTACATCCGTCCC
AGCTCAAGTTTGTGTGTTCCGTGGTTGTATGGTATAGAAGTTAAACAGAT
AGGCAAGATCTCAGAATTTCAACTGCGTGTCTTTAATTACGAAAATTGGT
CACTGGCTATTTGTGGATTCAAGATTATATCCGAGAGTAAGACATTTATT
CATTGTCTGGTGTCCACTAACTACCTTACCTGCCTGAATTCGGCGTAGCT
CCTCTTTTGATGAAGTGACCGTGTGCTGGGGCCGTAACAGAACCAAGTTC
AGCGATACCAAGTGTCAACAATTGCATAAGTGAAAAGGATAGCCGCAGGC
TTGAATTGTTTGCAATTAAGGTACCCAGTATGGTTGAAACGTATATTAAA
CACAGCTTTCCTAGCGTTATTAGATTGATGTTCTTGGACCACTTTTTGCT
ACTGGATTTAAGGCAATATCCCATCTTATGTAGCTCCAACGTTTCAATTG
TTTTCAATCGATAATATGGAAGAACACTTTGCAAACTTGGGCCATCGTAT
ACTTTGTATTTAGATGGGATATAGAAATACAATTACCCTAAGTTGGCACA
TATCTATCCTACAATTATGTCATATTGAAAGTACAAGTTCCGTTTATAAA
TGCTGGTGCATCAGCGAACAATCAGCGCATCATACATATGATCGATAGCA
CTTAAGGTAAACTACTGAAAAGCGGAGGATTGGCATNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTC
CCGGAAGAAGTACTGTCAATACGAAAATGTCCACGGGAAAACAGACCGGA
ATGCCTGGCACTTCTGGTGATAAGTTATACAATACTGGACCAAGACCGTG
ATGAGCTTATGTTTTGATCATCAGCCCGAATTAGTGTCTCATACTGATCC
GAGTCTGAGCATCATTCTTCAAGGGTTGACCATGCCTAACTGTATTGATG
CCATTAACCTTGAAAGATTAGAGACAATAGGGGATTCATTCCTGAAATAC
GCAATCACTTCCTACCTGTTCAATGTTTACGATACTACTCATGAGGGTCG
TTTGAGTCATTTACGATCGTAG

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