EMLSAG00000007040, EMLSAG00000007040-689806 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007040
Unique NameEMLSAG00000007040-689806
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000007040 vs. GO
Match: - (symbol:NHP2 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR002415 PRINTS:PR00883 InterPro:IPR004038 Pfam:PF01248 GO:GO:0005730 GO:GO:0003723 InterPro:IPR018492 PRINTS:PR00881 KO:K11129 CTD:55651 GeneTree:ENSGT00550000074939 OrthoDB:EOG7288T8 TreeFam:TF105839 EMBL:AADN03006628 RefSeq:NP_001239073.1 UniGene:Gga.9658 Ensembl:ENSGALT00000005042 GeneID:416218 KEGG:gga:416218 Uniprot:F1NNP9)

HSP 1 Score: 48.9062 bits (115), Expect = 3.025e-7
Identity = 19/41 (46.34%), Postives = 33/41 (80.49%), Query Frame = 0 
Query:   22 SYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRTVDLG 62
            SY+E+L+H++ I++P+ASRKL++K+YKCI+K    + +  G
Sbjct:   18 SYREQLEHLNPIAQPLASRKLTRKLYKCIRKAAKHKQIRRG 58
[Close]
BLAST of EMLSAG00000007040 vs. GO
Match: - (symbol:nhp2 "H/ACA ribonucleoprotein complex subunit 2-like protein" species:8364 "Xenopus (Silurana) tropicalis" [GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS] [GO:0030515 "snoRNA binding" evidence=ISS] [GO:0031118 "rRNA pseudouridine synthesis" evidence=ISS] InterPro:IPR002415 InterPro:IPR004037 PRINTS:PR00883 PROSITE:PS01082 InterPro:IPR004038 Pfam:PF01248 GO:GO:0005730 GO:GO:0030515 GO:GO:0031118 GO:GO:0005732 eggNOG:COG1358 HOVERGEN:HBG000328 InterPro:IPR018492 PRINTS:PR00881 HOGENOM:HOG000055227 KO:K11129 CTD:55651 GeneTree:ENSGT00550000074939 OrthoDB:EOG7288T8 TreeFam:TF105839 EMBL:BC061305 RefSeq:NP_988989.1 UniGene:Str.1896 ProteinModelPortal:Q6P8C4 STRING:8364.ENSXETP00000014709 Ensembl:ENSXETT00000014709 GeneID:394586 KEGG:xtr:394586 Xenbase:XB-GENE-973261 InParanoid:Q6P8C4 OMA:ILCEESD Bgee:Q6P8C4 Uniprot:Q6P8C4)

HSP 1 Score: 45.4394 bits (106), Expect = 5.326e-6
Identity = 23/59 (38.98%), Postives = 38/59 (64.41%), Query Frame = 0 
Query:   11 VTKGARENNKE-------SYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRTVDLG 62
            +TK  +E ++E       SY E L +++ I+KP+A RKL+KK+YKC+KK +  + +  G
Sbjct:    1 MTKAKKEESEEVPETPSKSYDELLAYLNPIAKPLAGRKLTKKLYKCVKKAIKQKNIRRG 59
[Close]
BLAST of EMLSAG00000007040 vs. GO
Match: - (symbol:nhp2 "H/ACA ribonucleoprotein complex subunit 2-like protein" species:8355 "Xenopus laevis" [GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS] [GO:0030515 "snoRNA binding" evidence=ISS] [GO:0031118 "rRNA pseudouridine synthesis" evidence=ISS] InterPro:IPR002415 InterPro:IPR004037 PRINTS:PR00883 PROSITE:PS01082 InterPro:IPR004038 Pfam:PF01248 GO:GO:0005730 GO:GO:0030515 GO:GO:0031118 GO:GO:0005732 HOVERGEN:HBG000328 InterPro:IPR018492 PRINTS:PR00881 KO:K11129 CTD:55651 EMBL:BC068845 RefSeq:NP_001084534.1 UniGene:Xl.44669 ProteinModelPortal:Q6NTV9 GeneID:414481 KEGG:xla:414481 Xenbase:XB-GENE-6252839 Uniprot:Q6NTV9)

HSP 1 Score: 44.669 bits (104), Expect = 1.082e-5
Identity = 19/46 (41.30%), Postives = 32/46 (69.57%), Query Frame = 0 
Query:   17 ENNKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRTVDLG 62
            E   +SY E L +++ ++KP+A RKL+KK+YKC+KK +  + +  G
Sbjct:   14 ETPSKSYDELLSYLNPVAKPLAGRKLTKKLYKCVKKAIKQKNIRRG 59
[Close]
BLAST of EMLSAG00000007040 vs. GO
Match: - (symbol:Nhp2 "NHP2 ribonucleoprotein" species:10090 "Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing" evidence=IEA] [GO:0008150 "biological_process" evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0044822 "poly(A) RNA binding" evidence=ISO] InterPro:IPR002415 PRINTS:PR00883 InterPro:IPR004038 Pfam:PF01248 MGI:MGI:1098547 GO:GO:0005730 GO:GO:0030515 GO:GO:0015030 GO:GO:0031118 GO:GO:0005732 eggNOG:COG1358 HOVERGEN:HBG000328 InterPro:IPR018492 PRINTS:PR00881 HOGENOM:HOG000055227 KO:K11129 CTD:55651 GeneTree:ENSGT00550000074939 OMA:PVDIMCH OrthoDB:EOG7288T8 TreeFam:TF105839 EMBL:AK007340 EMBL:AK008766 EMBL:AK019134 EMBL:BC024944 RefSeq:NP_080907.1 UniGene:Mm.28203 ProteinModelPortal:Q9CRB2 SMR:Q9CRB2 IntAct:Q9CRB2 MINT:MINT-4125123 PhosphoSite:Q9CRB2 PaxDb:Q9CRB2 PRIDE:Q9CRB2 Ensembl:ENSMUST00000127405 GeneID:52530 KEGG:mmu:52530 UCSC:uc007iuc.1 InParanoid:Q9CRB2 NextBio:309089 PRO:PR:Q9CRB2 Bgee:Q9CRB2 Genevestigator:Q9CRB2 Uniprot:Q9CRB2)

HSP 1 Score: 44.2838 bits (103), Expect = 1.536e-5
Identity = 18/45 (40.00%), Postives = 34/45 (75.56%), Query Frame = 0 
Query:   18 NNKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRTVDLG 62
            + + +YKE L +++ I++P+ASR+L++K+YKCIKK +  + +  G
Sbjct:   19 SEERTYKELLVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRG 63
[Close]
BLAST of EMLSAG00000007040 vs. GO
Match: - (symbol:NHP2 "NHP2" species:7227 "Drosophila melanogaster" [GO:0005730 "nucleolus" evidence=NAS] [GO:0031118 "rRNA pseudouridine synthesis" evidence=ISS] [GO:0030559 "rRNA pseudouridylation guide activity" evidence=ISS] [GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS] [GO:0030515 "snoRNA binding" evidence=ISS] InterPro:IPR004038 Pfam:PF01248 EMBL:AE014296 GO:GO:0005730 GO:GO:0030515 GO:GO:0031118 GO:GO:0005732 eggNOG:COG1358 InterPro:IPR018492 PRINTS:PR00881 KO:K11129 CTD:55651 GeneTree:ENSGT00550000074939 OMA:PVDIMCH OrthoDB:EOG7288T8 EMBL:AF217228 EMBL:BT023752 RefSeq:NP_001261849.1 RefSeq:NP_651965.1 UniGene:Dm.7234 ProteinModelPortal:Q9V3U2 SMR:Q9V3U2 BioGrid:68768 IntAct:Q9V3U2 MINT:MINT-306292 PaxDb:Q9V3U2 PRIDE:Q9V3U2 EnsemblMetazoa:FBtr0075698 EnsemblMetazoa:FBtr0333076 GeneID:44005 KEGG:dme:Dmel_CG5258 UCSC:CG5258-RA FlyBase:FBgn0029148 InParanoid:Q9V3U2 PhylomeDB:Q9V3U2 GenomeRNAi:44005 NextBio:836568 PRO:PR:Q9V3U2 Bgee:Q9V3U2 Uniprot:Q9V3U2)

HSP 1 Score: 44.2838 bits (103), Expect = 1.901e-5
Identity = 34/119 (28.57%), Postives = 48/119 (40.34%), Query Frame = 0 
Query:   19 NKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRT-----------------------------------------------------VDLGSAIGVKQGTQTLLIGDHMGYKE 84
             +ESY +KL  V+ I+KPMA +KL+KK YK +KK M  +T                                                      DLG+A+GVK+GT  LL+  +  YK+
Sbjct:   26 EEESYDDKLIFVNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAAMGVKRGTVALLVRQNEEYKD 144
[Close]
BLAST of EMLSAG00000007040 vs. GO
Match: - (symbol:NHP2 "H/ACA ribonucleoprotein complex subunit 2-like protein" species:7245 "Drosophila yakuba" [GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS] [GO:0030515 "snoRNA binding" evidence=ISS] [GO:0031118 "rRNA pseudouridine synthesis" evidence=ISS] InterPro:IPR004038 Pfam:PF01248 GO:GO:0005730 GO:GO:0030515 GO:GO:0031118 EMBL:CM000159 GO:GO:0005732 eggNOG:COG1358 InterPro:IPR018492 PRINTS:PR00881 KO:K11129 OrthoDB:EOG7288T8 EMBL:AY231789 RefSeq:XP_002094819.1 ProteinModelPortal:Q6XIP0 EnsemblMetazoa:FBtr0266518 GeneID:6534135 KEGG:dya:Dyak_GE20000 FlyBase:FBgn0068118 Uniprot:Q6XIP0)

HSP 1 Score: 43.8986 bits (102), Expect = 2.174e-5
Identity = 34/119 (28.57%), Postives = 48/119 (40.34%), Query Frame = 0 
Query:   19 NKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRT-----------------------------------------------------VDLGSAIGVKQGTQTLLIGDHMGYKE 84
             +ESY +KL  V+ I+KPMA +KL+KK YK +KK M  +T                                                      DLG+A+GVK+GT  LL+  +  YK+
Sbjct:   26 EEESYDDKLIFVNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYAYTPSRADLGAAMGVKRGTVALLVRQNDEYKD 144
[Close]
BLAST of EMLSAG00000007040 vs. GO
Match: - (symbol:NHP2 "H/ACA ribonucleoprotein complex subunit 2" species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR002415 PRINTS:PR00883 InterPro:IPR004038 Pfam:PF01248 GO:GO:0005730 GO:GO:0003723 EMBL:AC136632 KO:K11129 CTD:55651 RefSeq:NP_001030005.1 UniGene:Hs.744074 GeneID:55651 KEGG:hsa:55651 HGNC:HGNC:14377 ChiTaRS:NHP2 GenomeRNAi:55651 ProteinModelPortal:J3QSY4 SMR:J3QSY4 PRIDE:J3QSY4 Ensembl:ENST00000314397 UCSC:uc003mis.2 NextBio:35537409 ArrayExpress:J3QSY4 Uniprot:J3QSY4)

HSP 1 Score: 41.9726 bits (97), Expect = 4.835e-5
Identity = 17/41 (41.46%), Postives = 31/41 (75.61%), Query Frame = 0 
Query:   22 SYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRTVDLG 62
            +Y+E L + + I++P+ASR+L++K+YKCIKK +  + +  G
Sbjct:   23 TYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRG 63
[Close]
BLAST of EMLSAG00000007040 vs. GO
Match: - (symbol:LOC100910210 "H/ACA ribonucleoprotein complex subunit 2-like" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR002415 PRINTS:PR00883 InterPro:IPR004038 Pfam:PF01248 RGD:6499385 GO:GO:0005730 GO:GO:0003723 EMBL:CH473948 eggNOG:COG1358 HOVERGEN:HBG000328 InterPro:IPR018492 PRINTS:PR00881 HOGENOM:HOG000055227 KO:K11129 GeneTree:ENSGT00550000074939 OrthoDB:EOG7288T8 TreeFam:TF105839 EMBL:AABR06063731 EMBL:BC162010 RefSeq:XP_003750866.1 RefSeq:XP_006246302.1 UniGene:Rn.4216 STRING:10116.ENSRNOP00000005688 Ensembl:ENSRNOT00000005688 GeneID:100910210 GeneID:287273 KEGG:rno:100910210 OMA:DITVEID NextBio:34071539 PRO:PR:B1WC56 Genevestigator:B1WC56 Uniprot:B1WC56)

HSP 1 Score: 42.743 bits (99), Expect = 5.401e-5
Identity = 17/45 (37.78%), Postives = 34/45 (75.56%), Query Frame = 0 
Query:   18 NNKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRTVDLG 62
            + + +Y+E L +++ I++P+ASR+L++K+YKCIKK +  + +  G
Sbjct:   19 SEERTYEELLVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRG 63
[Close]
BLAST of EMLSAG00000007040 vs. GO
Match: - (symbol:NHP2 "H/ACA ribonucleoprotein complex subunit 2" species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR002415 PRINTS:PR00883 InterPro:IPR004038 Pfam:PF01248 GO:GO:0005730 GO:GO:0003723 EMBL:AC136632 InterPro:IPR018492 PRINTS:PR00881 HOGENOM:HOG000055227 HGNC:HGNC:14377 ChiTaRS:NHP2 ProteinModelPortal:D6RCB9 SMR:D6RCB9 Ensembl:ENST00000514354 NextBio:35493809 ArrayExpress:D6RCB9 Bgee:D6RCB9 Uniprot:D6RCB9)

HSP 1 Score: 41.9726 bits (97), Expect = 8.472e-5
Identity = 17/45 (37.78%), Postives = 33/45 (73.33%), Query Frame = 0 
Query:   18 NNKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRTVDLG 62
            + + +Y+E L + + I++P+ASR+L++K+YKCIKK +  + +  G
Sbjct:   19 SGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRG 63
[Close]
BLAST of EMLSAG00000007040 vs. GO
Match: - (symbol:NHP2 "H/ACA ribonucleoprotein complex subunit 2" species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR002415 PRINTS:PR00883 InterPro:IPR004038 Pfam:PF01248 GO:GO:0005730 GO:GO:0003723 EMBL:AC136632 InterPro:IPR018492 PRINTS:PR00881 HOGENOM:HOG000055227 HGNC:HGNC:14377 ChiTaRS:NHP2 ProteinModelPortal:D6RC52 SMR:D6RC52 Ensembl:ENST00000511078 NextBio:35493754 ArrayExpress:D6RC52 Bgee:D6RC52 Uniprot:D6RC52)

HSP 1 Score: 41.5874 bits (96), Expect = 9.875e-5
Identity = 17/45 (37.78%), Postives = 33/45 (73.33%), Query Frame = 0 
Query:   18 NNKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRTVDLG 62
            + + +Y+E L + + I++P+ASR+L++K+YKCIKK +  + +  G
Sbjct:   19 SGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRG 63
[Close]
BLAST of EMLSAG00000007040 vs. C. finmarchicus
Match: gi|592856779|gb|GAXK01100765.1| (TSA: Calanus finmarchicus comp6123_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.493e-1
Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 0 
Query:   60 DLGSAIGVKQGTQTLLIGDHMGYKE 84
            DLG+A+GVK+G   +++ +H  YKE
Sbjct:  379 DLGTAMGVKRGCLMVMVREHEDYKE 453

HSP 2 Score: 31.187 bits (69), Expect = 3.669e-1
Identity = 13/19 (68.42%), Postives = 18/19 (94.74%), Query Frame = 0 
Query:   22 SYKEKLQHVSIISKPMASR 40
            SY+EKL+ VS+I+KPMAS+
Sbjct:  106 SYEEKLKFVSVIAKPMASK 162
[Close]
BLAST of EMLSAG00000007040 vs. C. finmarchicus
Match: gi|592856781|gb|GAXK01100763.1| (TSA: Calanus finmarchicus comp6123_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.619e-1
Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 0 
Query:   60 DLGSAIGVKQGTQTLLIGDHMGYKE 84
            DLG+A+GVK+G   +++ +H  YKE
Sbjct:  379 DLGTAMGVKRGCLMVMVREHEDYKE 453

HSP 2 Score: 31.187 bits (69), Expect = 3.801e-1
Identity = 13/19 (68.42%), Postives = 18/19 (94.74%), Query Frame = 0 
Query:   22 SYKEKLQHVSIISKPMASR 40
            SY+EKL+ VS+I+KPMAS+
Sbjct:  106 SYEEKLKFVSVIAKPMASK 162
[Close]
BLAST of EMLSAG00000007040 vs. C. finmarchicus
Match: gi|592856778|gb|GAXK01100766.1| (TSA: Calanus finmarchicus comp6123_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 4.863e-1
Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 0 
Query:   60 DLGSAIGVKQGTQTLLIGDHMGYKE 84
            DLG+A+GVK+G   +++ +H  YKE
Sbjct:  370 DLGTAMGVKRGCLMVMVREHEDYKE 444
[Close]
BLAST of EMLSAG00000007040 vs. C. finmarchicus
Match: gi|592856780|gb|GAXK01100764.1| (TSA: Calanus finmarchicus comp6123_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 5.038e-1
Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 0 
Query:   60 DLGSAIGVKQGTQTLLIGDHMGYKE 84
            DLG+A+GVK+G   +++ +H  YKE
Sbjct:  370 DLGTAMGVKRGCLMVMVREHEDYKE 444
[Close]
BLAST of EMLSAG00000007040 vs. C. finmarchicus
Match: gi|592860047|gb|GAXK01097515.1| (TSA: Calanus finmarchicus comp38128_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.096e+0
Identity = 12/19 (63.16%), Postives = 18/19 (94.74%), Query Frame = 0 
Query:   22 SYKEKLQHVSIISKPMASR 40
            SY++KL+ VS+I+KPMAS+
Sbjct:  344 SYEDKLRFVSVIAKPMASK 400

HSP 2 Score: 29.6462 bits (65), Expect = 1.582e+0
Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 0 
Query:   60 DLGSAIGVKQGTQTLLIGDHMGYKE 84
            DLGSA+GVK+G   +++ ++  YKE
Sbjct:   53 DLGSAMGVKRGCLMVMVREYEDYKE 127
[Close]
BLAST of EMLSAG00000007040 vs. L. salmonis peptides
Match: EMLSAP00000007040 (pep:novel supercontig:LSalAtl2s:LSalAtl2s39:592516:593707:1 gene:EMLSAG00000007040 transcript:EMLSAT00000007040 description:"snap_masked-LSalAtl2s39-processed-gene-6.2")

HSP 1 Score: 209.92 bits (533), Expect = 3.418e-71
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 
Query:    1 MAKKDEFLLNVTKGARENNKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRTVDLGSAIGVKQGTQTLLIGDHMGYKENPKYIPFYPRPLIIDSSY 102
            MAKKDEFLLNVTKGARENNKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRTVDLGSAIGVKQGTQTLLIGDHMGYKENPKYIPFYPRPLIIDSSY
Sbjct:    1 MAKKDEFLLNVTKGARENNKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRTVDLGSAIGVKQGTQTLLIGDHMGYKENPKYIPFYPRPLIIDSSY 102
[Close]
BLAST of EMLSAG00000007040 vs. L. salmonis peptides
Match: EMLSAP00000008887 (pep:novel supercontig:LSalAtl2s:LSalAtl2s554:370357:371198:1 gene:EMLSAG00000008887 transcript:EMLSAT00000008887 description:"maker-LSalAtl2s554-augustus-gene-3.43")

HSP 1 Score: 100.523 bits (249), Expect = 9.561e-28
Identity = 63/137 (45.99%), Postives = 72/137 (52.55%), Query Frame = 0 
Query:    1 MAKKDEFLLNVTKGARENNKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRT-----------------------------------------------------VDLGSAIGVKQGTQTLLIGDHMGYKE 84
            M KKDE LLNVT GA +N+KE Y+EKL+HVSIISKPMASRKL+KKIYKCIKKGM  +T                                                      DLGSA+GVK+GT TLLI +H  YKE
Sbjct:    1 MGKKDESLLNVTNGAGDNDKECYEEKLKHVSIISKPMASRKLAKKIYKCIKKGMKHKTYVRSGLKSVQLHLRKGERGILIFAGDVTPIDVMCHLPAVAEEKDIPYCYTPSRADLGSAMGVKRGTLTLLIREHEDYKE 137
[Close]
BLAST of EMLSAG00000007040 vs. Select Arthropod Genomes
Match: EFX72202.1 (hypothetical protein DAPPUDRAFT_227585 [Daphnia pulex])

HSP 1 Score: 49.6766 bits (117), Expect = 6.657e-8
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 0 
Query:   18 NNKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKG 53
            ++K SY E + HVSII+KPMASRKL+K+IYK +KK 
Sbjct:   26 SDKSSYDELMNHVSIIAKPMASRKLTKRIYKLLKKA 61
[Close]
BLAST of EMLSAG00000007040 vs. Select Arthropod Genomes
Match: XP_625159.2 (PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Apis mellifera])

HSP 1 Score: 49.2914 bits (116), Expect = 9.983e-8
Identity = 35/116 (30.17%), Postives = 53/116 (45.69%), Query Frame = 0 
Query:   22 SYKEKLQHVSIISKPMASRKLSKKIYKCIKKG--------------------------------------------MDDRTV---------DLGSAIGVKQGTQTLLIGDHMGYKE 84
            SY+EKL++ + I+KPMAS+KL+KKIYKCIKK                                              +D+ +         D+G+A+GVK+G+  +LI +H  YK+
Sbjct:   26 SYEEKLKYTNSIAKPMASKKLTKKIYKCIKKASKHKSYLRNGLKDVQKHLRKGEKGLVVFAGDVFPIEIMCHLPIVCEDKNIPYCYTPSRQDIGTAMGVKRGSLMVLIKEHEEYKD 141
[Close]
BLAST of EMLSAG00000007040 vs. nr
Match: gi|225713946|gb|ACO12819.1| (H/ACA ribonucleoprotein complex subunit 2-like protein [Lepeophtheirus salmonis] >gi|290462555|gb|ADD24325.1| H/ACA ribonucleoprotein complex subunit 2-like protein [Lepeophtheirus salmonis])

HSP 1 Score: 102.064 bits (253), Expect = 1.452e-25
Identity = 64/137 (46.72%), Postives = 73/137 (53.28%), Query Frame = 0 
Query:    1 MAKKDEFLLNVTKGARENNKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRT-----------------------------------------------------VDLGSAIGVKQGTQTLLIGDHMGYKE 84
            M KKDE LLNVT GA +N+KESY+EKL+HVSIISKPMASRKL+KKIYKCIKKGM  +T                                                      DLGSA+GVK+GT TLLI +H  YKE
Sbjct:    1 MGKKDESLLNVTNGAGDNDKESYEEKLKHVSIISKPMASRKLAKKIYKCIKKGMKHKTYVRSGLKSVQLHLRKGERGILIFAGDVTPIDVMCHLPAVAEEKDIPYCYTPSRADLGSAMGVKRGTLTLLIREHEDYKE 137
[Close]
BLAST of EMLSAG00000007040 vs. nr
Match: gi|290562515|gb|ADD38653.1| (H/ACA ribonucleoprotein complex subunit 2-like protein [Lepeophtheirus salmonis])

HSP 1 Score: 100.523 bits (249), Expect = 5.844e-25
Identity = 63/137 (45.99%), Postives = 72/137 (52.55%), Query Frame = 0 
Query:    1 MAKKDEFLLNVTKGARENNKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRT-----------------------------------------------------VDLGSAIGVKQGTQTLLIGDHMGYKE 84
            M KKDE LLNVT GA +N+KE Y+EKL+HVSIISKPMASRKL+KKIYKCIKKGM  +T                                                      DLGSA+GVK+GT TLLI +H  YKE
Sbjct:    1 MGKKDESLLNVTNGAGDNDKECYEEKLKHVSIISKPMASRKLAKKIYKCIKKGMKHKTYVRSGLKSVQLHLRKGERGILIFAGDVTPIDVMCHLPAVAEEKDIPYCYTPSRADLGSAMGVKRGTLTLLIREHEDYKE 137
[Close]
BLAST of EMLSAG00000007040 vs. nr
Match: gi|225708982|gb|ACO10337.1| (H/ACA ribonucleoprotein complex subunit 2-like protein [Caligus rogercresseyi])

HSP 1 Score: 85.8853 bits (211), Expect = 2.785e-19
Identity = 58/138 (42.03%), Postives = 71/138 (51.45%), Query Frame = 0 
Query:    1 MAKKDEFLLNVTKGAR-ENNKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKGM--------------------------------------------DDRTV---------DLGSAIGVKQGTQTLLIGDHMGYKE 84
            M KKDE LLN T G+  E  KE Y+EK++HVSIISKPMASRKL+KKIYKCIKKGM                                            +D+ +         DLG+A+GVK+GT TLLI +H  Y+E
Sbjct:    1 MGKKDESLLNTTNGSSAELTKEVYEEKMKHVSIISKPMASRKLTKKIYKCIKKGMKQKNYIRSGLKSVQLHIRKGERGLLVFAGDVTPIDVMCHLPAVAEDKDIPYCFTPSRADLGTAMGVKRGTLTLLIREHEDYQE 138
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BLAST of EMLSAG00000007040 vs. nr
Match: gi|225709836|gb|ACO10764.1| (H/ACA ribonucleoprotein complex subunit 2-like protein [Caligus rogercresseyi])

HSP 1 Score: 85.8853 bits (211), Expect = 2.908e-19
Identity = 58/138 (42.03%), Postives = 71/138 (51.45%), Query Frame = 0 
Query:    1 MAKKDEFLLNVTKGAR-ENNKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKGM--------------------------------------------DDRTV---------DLGSAIGVKQGTQTLLIGDHMGYKE 84
            M KKDE LLN T G+  E  KE Y+EK++HVSIISKPMASRKL+KKIYKCIKKGM                                            +D+ +         DLG+A+GVK+GT TLLI +H  Y+E
Sbjct:    1 MGKKDESLLNTTNGSSAELTKEVYEEKMKHVSIISKPMASRKLTKKIYKCIKKGMKQKNYIRSGLKSVQLHIRKGERGLLVFAGDVTPIDVMCHLPAVVEDKDIPYCFTPSRADLGTAMGVKRGTLTLLIREHEDYQE 138
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BLAST of EMLSAG00000007040 vs. nr
Match: gi|925683553|gb|KOX80131.1| (H/ACA ribonucleoprotein complex subunit 2-like protein [Melipona quadrifasciata])

HSP 1 Score: 56.225 bits (134), Expect = 8.411e-8
Identity = 40/117 (34.19%), Postives = 58/117 (49.57%), Query Frame = 0 
Query:    5 DEFLLNVTKGARENNKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKG----------------------------MDDRTV---------DLGSAIGVKQGTQTLLIGDHMGYKE 84
            D+ +  V  G    NK  Y+EKL+  S I+KPMAS+KL+KKIYKCIKK                              +D+ +         D+G+A+GVK+G+  +LI +H  Y+E
Sbjct:   10 DDSVKEVETGDSTENK--YEEKLKFTSSIAKPMASKKLTKKIYKCIKKEATCVNIFVLVVFAGDVFPIEIMCHLPIVCEDKDIPYCFTPSKQDIGAAMGVKRGSLMVLIKEHEEYQE 124
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BLAST of EMLSAG00000007040 vs. nr
Match: gi|861647299|gb|KMQ95863.1| (h aca ribonucleoprotein complex subunit 2-like protein [Lasius niger])

HSP 1 Score: 55.8398 bits (133), Expect = 1.148e-7
Identity = 40/138 (28.99%), Postives = 63/138 (45.65%), Query Frame = 0 
Query:    4 KDEFLLNVTKGARENNKE----SYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRT-----------------------------------------------------VDLGSAIGVKQGTQTLLIGDHMGYKE 84
            ++E  + V K  +E + +    SY+EKL+ V+ I+KPMAS+KL+KKIYKCIKK    +T                                                     +D+G+A+GVK+G+  +LI +H+ YK+
Sbjct:    2 QEEIKMEVDKSIKEESSDAPEMSYEEKLELVNAIAKPMASKKLTKKIYKCIKKASKHKTYLRNGLKDVQKHLRKGETGLVVFAGDVYPIEIMCHLPIVCEDKNIPYCFTPSRLDIGTAMGVKRGSLMVLIKEHLDYKD 139
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BLAST of EMLSAG00000007040 vs. nr
Match: gi|815804645|ref|XP_012223035.1| (PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Linepithema humile] >gi|815804647|ref|XP_012223036.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Linepithema humile])

HSP 1 Score: 55.8398 bits (133), Expect = 1.197e-7
Identity = 37/116 (31.90%), Postives = 52/116 (44.83%), Query Frame = 0 
Query:   22 SYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRT-----------------------------------------------------VDLGSAIGVKQGTQTLLIGDHMGYKE 84
            SY+EKLQHV+ I+KPMA +KL+KKIYKC+KK    +T                                                     +D+G+A+GVK+G+  +LI +H  YKE
Sbjct:   24 SYEEKLQHVNAIAKPMAPKKLTKKIYKCMKKASKHKTHIRNGLKDVQKHLRKGEKGMVVFAGDVNPVEIMCHLPIVCEDKGIPYCFTPSRLDIGTALGVKRGSLMVLIKEHPDYKE 139
[Close]
BLAST of EMLSAG00000007040 vs. nr
Match: gi|755926027|ref|XP_011300298.1| (PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Fopius arisanus])

HSP 1 Score: 55.0694 bits (131), Expect = 3.020e-7
Identity = 38/122 (31.15%), Postives = 56/122 (45.90%), Query Frame = 0 
Query:   17 ENNKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKG--------------------------------------------MDDRTV---------DLGSAIGVKQGTQTLLIGDHMGYKEN 85
            E+ KESY++K+Q+ S I++PMA +KL+KKIYKCIKK                                              +D+ +         D+G+A+GVK+G+  +LI DH  YKE 
Sbjct:   18 ESGKESYEDKIQNCSSIAQPMAPKKLTKKIYKCIKKASKHKGYLRNGLKDVQKHLRKGERGIVIFAGDVFPIEIMCHLPIVCEDKEIPYAYVPSKQDIGTAMGVKRGSLMVLIKDHEDYKEE 139
[Close]
BLAST of EMLSAG00000007040 vs. nr
Match: gi|929358315|ref|XP_014088452.1| (PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Bactrocera oleae])

HSP 1 Score: 54.299 bits (129), Expect = 4.843e-7
Identity = 37/119 (31.09%), Postives = 53/119 (44.54%), Query Frame = 0 
Query:   19 NKESYKEKLQHVSIISKPMASRKLSKKIYKCIKKGMDDRT-----------------------------------------------------VDLGSAIGVKQGTQTLLIGDHMGYKE 84
             ++SY +KL++V+IIS+PMASRK++KK YK IKK M  +T                                                      DLG+A+GVK+GT  LL+ +H  YK+
Sbjct:   25 EEDSYDDKLKYVNIISQPMASRKMAKKCYKLIKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPIDIMCHLPAVCEEKGIPYAYTPSRADLGAAMGVKRGTVALLVREHQDYKD 143
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007040 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 14
Match NameE-valueIdentityDescription
-3.025e-746.34symbol:NHP2 "Uncharacterized protein" species:9031... [more]
-5.326e-638.98symbol:nhp2 "H/ACA ribonucleoprotein complex subun... [more]
-1.082e-541.30symbol:nhp2 "H/ACA ribonucleoprotein complex subun... [more]
-1.536e-540.00symbol:Nhp2 "NHP2 ribonucleoprotein" species:10090... [more]
-1.901e-528.57symbol:NHP2 "NHP2" species:7227 "Drosophila melano... [more]
-2.174e-528.57symbol:NHP2 "H/ACA ribonucleoprotein complex subun... [more]
-4.835e-541.46symbol:NHP2 "H/ACA ribonucleoprotein complex subun... [more]
-5.401e-537.78symbol:LOC100910210 "H/ACA ribonucleoprotein compl... [more]
-8.472e-537.78symbol:NHP2 "H/ACA ribonucleoprotein complex subun... [more]
-9.875e-537.78symbol:NHP2 "H/ACA ribonucleoprotein complex subun... [more]

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BLAST of EMLSAG00000007040 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592856779|gb|GAXK01100765.1|3.493e-148.00TSA: Calanus finmarchicus comp6123_c0_seq3 transcr... [more]
gi|592856781|gb|GAXK01100763.1|3.619e-148.00TSA: Calanus finmarchicus comp6123_c0_seq1 transcr... [more]
gi|592856778|gb|GAXK01100766.1|4.863e-148.00TSA: Calanus finmarchicus comp6123_c0_seq4 transcr... [more]
gi|592856780|gb|GAXK01100764.1|5.038e-148.00TSA: Calanus finmarchicus comp6123_c0_seq2 transcr... [more]
gi|592860047|gb|GAXK01097515.1|1.096e+063.16TSA: Calanus finmarchicus comp38128_c0_seq1 transc... [more]
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BLAST of EMLSAG00000007040 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000070403.418e-71100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s39:592516... [more]
EMLSAP000000088879.561e-2845.99pep:novel supercontig:LSalAtl2s:LSalAtl2s554:37035... [more]
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BLAST of EMLSAG00000007040 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007040 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 2
Match NameE-valueIdentityDescription
EFX72202.16.657e-863.89hypothetical protein DAPPUDRAFT_227585 [Daphnia pu... [more]
XP_625159.29.983e-830.17PREDICTED: H/ACA ribonucleoprotein complex subunit... [more]
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BLAST of EMLSAG00000007040 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 9
Match NameE-valueIdentityDescription
gi|225713946|gb|ACO12819.1|1.452e-2546.72H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
gi|290562515|gb|ADD38653.1|5.844e-2545.99H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
gi|225708982|gb|ACO10337.1|2.785e-1942.03H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
gi|225709836|gb|ACO10764.1|2.908e-1942.03H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
gi|925683553|gb|KOX80131.1|8.411e-834.19H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
gi|861647299|gb|KMQ95863.1|1.148e-728.99h aca ribonucleoprotein complex subunit 2-like pro... [more]
gi|815804645|ref|XP_012223035.1|1.197e-731.90PREDICTED: H/ACA ribonucleoprotein complex subunit... [more]
gi|755926027|ref|XP_011300298.1|3.020e-731.15PREDICTED: H/ACA ribonucleoprotein complex subunit... [more]
gi|929358315|ref|XP_014088452.1|4.843e-731.09PREDICTED: H/ACA ribonucleoprotein complex subunit... [more]
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BLAST of EMLSAG00000007040 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s39supercontigLSalAtl2s39:592516..593707 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s39-processed-gene-6.2
Biotypeprotein_coding
EvidenceIEA
NoteH/ACA ribonucleoprotein complex subunit 2-like protein [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007040 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007040EMLSAT00000007040-702887Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s39:592516..593707+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007040-689806 ID=EMLSAG00000007040-689806|Name=EMLSAG00000007040|organism=Lepeophtheirus salmonis|type=gene|length=1192bp|location=Sequence derived from alignment at LSalAtl2s39:592516..593707+ (Lepeophtheirus salmonis)
ATGGCTAAAAAAGATGAGTTTCTCTTGAATGTAACAAAAGGTGCTAGGGA
AAACAATAAGGAAAGCTACAAAGAGAAGCTTCAGCATGTGAGCATCATCA
GTAAACCCATGGCCTCTCGAAAACTCTCGAAAAAAATCTACAAATGCATT
AAGAAGGGAATGGATGATAGGACGTACGTTCACAACGGGCTTCAGAGCGT
TCAACTTCATTTGAGGAAAGTAGAAAGGGGAATTTGGGATTTTTGCAGGA
GATGTCACTCCCTTTGACGTGATTTGCCATTTCCTTGCAGTAGCAGAGAA
ATAATAAATCTCCTATTTTGATACACCTTCCAGAGTAGATCTTGGATCTG
CCATAGGAGTTAAACAGGGTACTCAAACGCTTTTAATAGGGGATCATATG
GGCTACAAGGAAAATCCGAAGTATATACCCTTTTATCCCAGGCCTCTAAT
CATTGACTCTTCAGTAATTTTATTCGATCCTTTTTATTTGGACATTTCGA
TTCAAATAAATTTGCTTATAAAAAAAAGAGTTATATAATAAGTGAATTCT
ACATAAATATGACACATACCCTCCAAGATCTTGAGGGCCAAGGAATAAAA
GATATCATACAAAAAATATATAAATTTGAAACATTACAAAATTGTAAATA
TCTATCTGCAAAGGCTTATAAAATAAAAATATATATTAAACAAATCTTAG
AGGAAGCCAAGATCTTCAAATTTGAATCCAAAAGGATTTTTTTTTTTAAA
GTTTTCAAAAATCATGGGTCAAAATAAAGACACAAACCGTGCAATCTATA
ATTATTTCTATCAAGATTATTTGTGGATCAACTCTTATTTTCAAACTTAT
TTGCTAAGTGTTAGAATAATATCAAATATTTCCATTAAAAAAATAAGTTA
TAAATAAATGTAGATAATTATTTTGCTACGTCAATATTGGTTAAGGTATT
GGCTGSAGKATTCATGGTCAAAGATAGGKGTGTAAATTGCAAGCATTACA
TATATCTTTAATGTAATATTTGTGGGTTAACCACTTTCATAAATTTAAGA
TAATTTAAAAGAACTAAAGTCGATGTATTAAAGGGTAAAATGATAAAATA
AGCCTTTGAATTTAAGTTCACGCCATGGTTGGCTTCAATTGATTTATTAT
TTATATATTGATCTAAATAAAATACTTTTTTTATAGTATTAG
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