EMLSAG00000007249, EMLSAG00000007249-690015 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007249
Unique NameEMLSAG00000007249-690015
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000007249 vs. C. finmarchicus
Match: gi|592792279|gb|GAXK01162289.1| (TSA: Calanus finmarchicus comp655737_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 57.7658 bits (138), Expect = 1.343e-9
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMTR--SKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEHAGKVHQEG 134
            KVAVTN  +W+   T    VVL+ +  ++  IT L+ Q+ SF+AK   C NPIVY +S  K+RE L K L    I + A +   +G
Sbjct:  853 KVAVTNVLLWICAWTPYASVVLIGQFGNRSLITPLVSQMPSFLAKTCSCFNPIVYAVSHPKFREALQKHLPGLGIGDKAVEKISDG 1110
[Close]
BLAST of EMLSAG00000007249 vs. C. finmarchicus
Match: gi|592940362|gb|GAXK01018191.1| (TSA: Calanus finmarchicus comp32692_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 51.6026 bits (122), Expect = 1.236e-7
Identity = 28/84 (33.33%), Postives = 44/84 (52.38%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMT--RSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEHAGKVHQ 132
            KVA+TN  +W+   T   +V  +        +T L+ Q+ SF AK A CLNPIVY +S  K+RE + +++    I +   +   
Sbjct:  913 KVAITNVMLWLCTWTPYAIVCAIGCFGDMTLVTPLVSQLPSFFAKTASCLNPIVYAVSHPKFREAIAREIPCLGIGDRPKQTDN 1164

HSP 2 Score: 34.6538 bits (78), Expect = 7.434e-2
Identity = 19/47 (40.43%), Postives = 28/47 (59.57%), Query Frame = 0 
Query:    1 MIVKGLNGFQISTGNALVIIVGIWVYFSFISTIALFNIWGGYIVEGL 47
            +IVKG +G +I++G A +I++  W Y +    I  F  WG Y  EGL
Sbjct:  535 VIVKGFSGTKITSGMAFIILIVCWGY-AVGCCIPPFFGWGSYAPEGL 672
[Close]
BLAST of EMLSAG00000007249 vs. C. finmarchicus
Match: gi|592936816|gb|GAXK01021737.1| (TSA: Calanus finmarchicus comp1508152_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 2.782e-1
Identity = 17/62 (27.42%), Postives = 24/62 (38.71%), Query Frame = 0 
Query:   60 WVSIRTSSTLVVLMTRSKYS--ITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLC 119
            W          V    +K+   +   L  +  F    +  LNPI+Y + SLKYR      LC
Sbjct:  463 WAPFHAQRLTFVYFKETKFFRLVNEYLFHVSGFFYYFSATLNPILYNVMSLKYRHAFKATLC 648
[Close]
BLAST of EMLSAG00000007249 vs. C. finmarchicus
Match: gi|592937350|gb|GAXK01021203.1| (TSA: Calanus finmarchicus comp2400014_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 3.896e+0
Identity = 29/102 (28.43%), Postives = 46/102 (45.10%), Query Frame = 0 
Query:   25 VYFSFISTIALFNIWGGYIVEGLH---YIKVAVTNKSIWVSIRTSSTLVVLMTRSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSI 123
            +Y  FI+     N++     E  H   +  V +T+ SI +    S+   VL  R+ +    L IQI S   KI   +NPI   +  L Y+  L+  L  F++
Sbjct:  235 LYKVFIANKHFCNLFCFVFEESFHILAFFHVPITD-SIRIEDEFSNPCKVLSVRASH----LTIQIASIPLKIRAVMNPISVCLQKLNYQ--LLHDLLLFNV 519
[Close]
BLAST of EMLSAG00000007249 vs. C. finmarchicus
Match: gi|592953957|gb|GAXK01004596.1| (TSA: Calanus finmarchicus comp2047341_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 3.910e+0
Identity = 16/69 (23.19%), Postives = 30/69 (43.48%), Query Frame = 0 
Query:   71 VLMTRSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKL---CYFSIEEHAGKVHQEGSC 136
            ++   + Y++   +  I   +  ++  LNPI+Y + S KYR+   + L   C       A     E +C
Sbjct:  482 IMSEETYYTMNEKMFYITGILYYLSSTLNPILYNVMSAKYRKAFKQTLLSSCLKRTRNEANSQRLEQTC 688
[Close]
BLAST of EMLSAG00000007249 vs. C. finmarchicus
Match: gi|592910366|gb|GAXK01048009.1| (TSA: Calanus finmarchicus comp1254551_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 6.132e+0
Identity = 23/86 (26.74%), Postives = 39/86 (45.35%), Query Frame = 0 
Query:   12 STGNALVIIVGIWVYFSFISTIALFNIWGGYIVEGLHYIKVAVTNKSIWVSIRTSSTLVVLMTRSKYSIT-SLLIQIISFIAKIAK 96
            +T  A   ++ IWVY + I       +W  Y +EGL    +   +    V    ++T VV +T + + +  +L+I    FI K  K
Sbjct:  526 TTKRATFALIFIWVYPTLIMLPPALGVWSRYALEGL----ILTCSFEYCVDTVDNATYVVFLTFTSFVVPMTLIIYFYYFIVKTVK 771
[Close]
BLAST of EMLSAG00000007249 vs. C. finmarchicus
Match: gi|592866804|gb|GAXK01090758.1| (TSA: Calanus finmarchicus comp4861085_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 7.648e+0
Identity = 17/58 (29.31%), Postives = 31/58 (53.45%), Query Frame = 0 
Query:   16 ALVIIVGIWVYFSFISTIALFNIWGGYIVEGLHYIKVAVTNKSIWVSIRTSSTLVVLM 73
            A++ I+G+W++   ++ I LF I G Y  +       AV     W+S+  S T ++L+
Sbjct:  388 AVMAIIGVWIFSIILTCIPLFGICGQYGYD-------AVEGTCHWMSMMCSQTWIILV 540
[Close]
BLAST of EMLSAG00000007249 vs. C. finmarchicus
Match: gi|592930284|gb|GAXK01028261.1| (TSA: Calanus finmarchicus comp1065682_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 8.027e+0
Identity = 19/72 (26.39%), Postives = 31/72 (43.06%), Query Frame = 0 
Query:   48 HYIKVAVTNKSIWVSIRTSSTLVVLMTRSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLC 119
            H  K A+    +W +I TSS+  V        +  +L  I   +      +N IVY +   K+R+ L+   C
Sbjct:  264 HTPKAALNIYEVWTAIFTSSSQPVEDDPDINLLLDILTNISHLLIVTNSSVNIIVYALKDFKFRQVLLSFFC 479
[Close]
BLAST of EMLSAG00000007249 vs. C. finmarchicus
Match: gi|592930285|gb|GAXK01028260.1| (TSA: Calanus finmarchicus comp1065682_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 8.036e+0
Identity = 19/72 (26.39%), Postives = 31/72 (43.06%), Query Frame = 0 
Query:   48 HYIKVAVTNKSIWVSIRTSSTLVVLMTRSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLC 119
            H  K A+    +W +I TSS+  V        +  +L  I   +      +N IVY +   K+R+ L+   C
Sbjct:  264 HTPKAALNIYEVWTAIFTSSSQPVEDDPDINLLLDILTNISHLLIVTNSSVNIIVYALKDFKFRQVLLSFFC 479
[Close]
BLAST of EMLSAG00000007249 vs. L. salmonis peptides
Match: EMLSAP00000007249 (pep:novel supercontig:LSalAtl2s:LSalAtl2s407:310119:310804:-1 gene:EMLSAG00000007249 transcript:EMLSAT00000007249 description:"maker-LSalAtl2s407-snap-gene-2.8")

HSP 1 Score: 268.855 bits (686), Expect = 2.821e-93
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 
Query:    1 MIVKGLNGFQISTGNALVIIVGIWVYFSFISTIALFNIWGGYIVEGLHYIKVAVTNKSIWVSIRTSSTLVVLMTRSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEHAGKVHQEGSC 136
            MIVKGLNGFQISTGNALVIIVGIWVYFSFISTIALFNIWGGYIVEGLHYIKVAVTNKSIWVSIRTSSTLVVLMTRSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEHAGKVHQEGSC
Sbjct:    1 MIVKGLNGFQISTGNALVIIVGIWVYFSFISTIALFNIWGGYIVEGLHYIKVAVTNKSIWVSIRTSSTLVVLMTRSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEHAGKVHQEGSC 136
[Close]
BLAST of EMLSAG00000007249 vs. L. salmonis peptides
Match: EMLSAP00000005061 (pep:novel supercontig:LSalAtl2s:LSalAtl2s264:303145:304233:1 gene:EMLSAG00000005061 transcript:EMLSAT00000005061 description:"augustus_masked-LSalAtl2s264-processed-gene-3.0")

HSP 1 Score: 75.8702 bits (185), Expect = 3.457e-17
Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMT--RSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEHA 127
            KVAVTN S+W  I T   LVVL     S+ SIT L+ Q+ SFIAK A CLNP+VY +S  KYRE L+K++    IEE +
Sbjct:  271 KVAVTNVSLWAGIWTPXXLVVLXAVMGSRSSITPLVSQLPSFIAKTASCLNPMVYAMSHPKYREALMKEVPCLGIEEES 349

HSP 2 Score: 65.0846 bits (157), Expect = 2.147e-13
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0 
Query:    2 IVKGLNGFQISTGNALVIIVGIWVYFSFISTIALFNIWGGYIVEGL 47
            IVKGLNGF+IS G AL II+ IW Y   IS +ALF+IWGGY VEGL
Sbjct:  145 IVKGLNGFRISVGKALAIILVIWAYSIAISALALFDIWGGYTVEGL 190
[Close]
BLAST of EMLSAG00000007249 vs. L. salmonis peptides
Match: EMLSAP00000010390 (pep:novel supercontig:LSalAtl2s:LSalAtl2s68:1171681:1173265:1 gene:EMLSAG00000010390 transcript:EMLSAT00000010390 description:"maker-LSalAtl2s68-augustus-gene-11.5")

HSP 1 Score: 75.0998 bits (183), Expect = 7.078e-17
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMT--RSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEHAGK 129
            KVAVTN S+W  I +  T+VVLM    SK SI  L+ Q+ SFIAK A CLNP+VY +S  KYRE L++++    IEE   +
Sbjct:  289 KVAVTNVSLWAGIWSPYTIVVLMAVMGSKSSIXPLISQLPSFIAKTASCLNPMVYAMSHPKYREALMREVPCLGIEEETPE 369

HSP 2 Score: 60.4622 bits (145), Expect = 1.055e-11
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0 
Query:    2 IVKGLNGFQISTGNALVIIVGIWVYFSFISTIALFNIWGGYIVEGL 47
            IVKG NG +I+ G AL+II+ IW Y   IS +ALF+IWGGY VEGL
Sbjct:  163 IVKGFNGTKITAGKALIIIMSIWGYSIAISALALFDIWGGYTVEGL 208
[Close]
BLAST of EMLSAG00000007249 vs. L. salmonis peptides
Match: EMLSAP00000002839 (pep:novel supercontig:LSalAtl2s:LSalAtl2s163:319470:321170:1 gene:EMLSAG00000002839 transcript:EMLSAT00000002839 description:"maker-LSalAtl2s163-augustus-gene-3.3")

HSP 1 Score: 68.9366 bits (167), Expect = 1.049e-14
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMT--RSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEHAGK 129
            KVA+TN S+W  I     LVVL     SK SIT L+ Q+ SFIAK A C+NP+VY +S  KYRE L+ ++    I+E    
Sbjct:  283 KVAITNVSLWAGIWXPYXLVVLXAVLGSKSSITPLVSQLPSFIAKTASCINPLVYAVSHPKYREALMTEVPCLGIQEQGAP 363

HSP 2 Score: 52.373 bits (124), Expect = 4.677e-9
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 0 
Query:    2 IVKGLNGFQISTGNALVIIVGIWVYFSFISTIALFNIWGGYIVEGL 47
            IVKG+NG +I+   A ++++ IW Y   +S +ALFN+WGG++ EGL
Sbjct:  157 IVKGMNGTRITPMRAFILLLFIWFYAIGVSALALFNVWGGFMAEGL 202
[Close]
BLAST of EMLSAG00000007249 vs. Select Arthropod Genomes
Match: EFX63569.1 (hypothetical protein DAPPUDRAFT_307030 [Daphnia pulex])

HSP 1 Score: 50.8322 bits (120), Expect = 1.696e-7
Identity = 33/92 (35.87%), Postives = 48/92 (52.17%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMTR--SKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEHA-----GKVHQEGS 135
            K+A+ N S+WV+  T    + L     ++ +IT L+  + + IAK A   NPI+Y IS  KYR  L K + +F I E A     G    +GS
Sbjct:  285 KIAMMNISLWVAAWTPYAAICLQGAVGNQDTITPLVTILPALIAKSASIFNPIIYAISHPKYRLALQKTVPWFCINEAAPPPSGGDTQSQGS 376
[Close]
BLAST of EMLSAG00000007249 vs. Select Arthropod Genomes
Match: EFX76309.1 (hypothetical protein DAPPUDRAFT_306275 [Daphnia pulex])

HSP 1 Score: 50.0618 bits (118), Expect = 3.420e-7
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMTR--SKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEHA--GKVHQEGS 135
            K+A+ N ++WV+  T    + L     ++  IT L+  + + IAK A   NPIVY IS  KYR  L K++ +F I E A  G  +Q  S
Sbjct:  283 KIAMMNITLWVAAWTPYAAICLQGAVGNQDKITPLVTILPALIAKSASIFNPIVYAISHPKYRLALQKEMPWFCINEKAPSGGDNQSNS 371
[Close]
BLAST of EMLSAG00000007249 vs. Select Arthropod Genomes
Match: EFX63568.1 (hypothetical protein DAPPUDRAFT_307031 [Daphnia pulex])

HSP 1 Score: 48.9062 bits (115), Expect = 8.800e-7
Identity = 31/91 (34.07%), Postives = 46/91 (50.55%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMTR--SKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEHA----GKVHQEGS 135
            KVA+ N ++W+ + T    +VL      +  IT L+  + + I K A   NPI+Y IS  KYR  L K++ +F I E      G    +GS
Sbjct:  281 KVAMMNITLWIGMWTPYAAIVLRGAFGDQEKITPLVTILPALICKCASIANPIIYAISHPKYRVALQKEIPWFCINEKPSNTKGDTQSQGS 371
[Close]
BLAST of EMLSAG00000007249 vs. nr
Match: gi|325911019|gb|ADZ45237.1| (opsin, partial [Tigriopus californicus])

HSP 1 Score: 75.0998 bits (183), Expect = 2.316e-13
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMT--RSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEH 126
            KVAVTN S+W  I +    VVLM    SK SIT L+ QI +F AK A C NPI+Y +S  KYRE L ++L    IEEH
Sbjct:  266 KVAVTNVSLWAGIWSPYAFVVLMAVIGSKGSITPLVSQIPAFCAKTASCFNPIIYAMSHPKYREALTRELPCLGIEEH 343
[Close]
BLAST of EMLSAG00000007249 vs. nr
Match: gi|17225654|gb|AAL37517.1|AF353342_1 (opsin, partial [Skogsbergia lerneri])

HSP 1 Score: 62.3882 bits (150), Expect = 4.186e-10
Identity = 35/87 (40.23%), Postives = 49/87 (56.32%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMT--RSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEHAGKVHQEGS 135
            KVA+TN  +WV+I T   +VV+M     +  IT L+ QI S +AK A C NP+VY IS  +YR+ L + L +  I E +       S
Sbjct:    8 KVAMTNVFLWVTIWTPYAVVVMMGVFGDQQKITPLVSQIPSLVAKTASCFNPVVYAISHPRYRQALQEALPWLCIHEPSDDTRSVAS 94
[Close]
BLAST of EMLSAG00000007249 vs. nr
Match: gi|17225702|gb|AAL37541.1|AF353366_1 (opsin, partial [Skogsbergia lerneri])

HSP 1 Score: 60.077 bits (144), Expect = 2.826e-9
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMT--RSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEE 125
            KVA+TN  +WV+I T   +VV+     ++ SIT L+ QI S +AK A C NP+VY IS  +YR+ L + L +  I E
Sbjct:    8 KVAMTNVFLWVTIWTPYAVVVMTGVFGNQNSITPLVSQIPSLVAKTASCFNPVVYAISHPRYRQALQESLPWLCIHE 84
[Close]
BLAST of EMLSAG00000007249 vs. nr
Match: gi|211922683|dbj|BAG80986.1| (opsin [Branchinella kugenumaensis])

HSP 1 Score: 63.5438 bits (153), Expect = 3.044e-9
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMTR--SKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEHAGK 129
            KVA+TN  +WV I T    V +     ++  +T L+ Q+ S I K+A CLNP+VY IS  KYR+ L K+L +F I E   K
Sbjct:  283 KVALTNVLLWVCIWTPYAFVAVTGAFGNRQILTPLVAQLPSLICKMASCLNPLVYAISHPKYRQVLQKELPWFCIHEPEDK 363
[Close]
BLAST of EMLSAG00000007249 vs. nr
Match: gi|17225704|gb|AAL37542.1|AF353367_1 (opsin, partial [Skogsbergia lerneri] >gi|17225708|gb|AAL37544.1|AF353369_1 opsin, partial [Skogsbergia lerneri])

HSP 1 Score: 59.6918 bits (143), Expect = 3.616e-9
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMT--RSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEHAGK 129
            KVA+TN  +WV+I T   +VV+M     +  +T L+ Q+ S +AK A C NP+VY IS  +YR+ L + L +  I E    
Sbjct:    8 KVAMTNVFLWVTIWTPYAVVVMMGVFGDQNRLTPLVSQVPSLVAKTASCFNPVVYAISHPRYRQALQEALPWLCIHEPTDD 88
[Close]
BLAST of EMLSAG00000007249 vs. nr
Match: gi|17225658|gb|AAL37519.1|AF353344_1 (opsin, partial [Skogsbergia lerneri])

HSP 1 Score: 59.3066 bits (142), Expect = 5.261e-9
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMT--RSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEE 125
            KVA+TN  +WV+I T   +VV+     ++ SIT L+ QI S +AK A C NP+VY IS  +YR+ L + L +  I E
Sbjct:    8 KVAMTNVFLWVTIWTPYAVVVVTGVFGNQNSITPLVSQIPSMVAKTASCFNPVVYAISHPRYRQALQEALPWLCIHE 84
[Close]
BLAST of EMLSAG00000007249 vs. nr
Match: gi|17225666|gb|AAL37523.1|AF353348_1 (opsin, partial [Skogsbergia lerneri])

HSP 1 Score: 58.9214 bits (141), Expect = 9.037e-9
Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMTR--SKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEE 125
            KVA+TN  +W++I T   +VV+     +  +IT L  Q+ S  AK A C NP++Y IS  KYR+ L + L +F I E
Sbjct:    8 KVAMTNVVLWITIWTPYAVVVMTGAWGNHDTITPLFSQLPSMFAKTASCFNPVIYAISHPKYRQALNESLPWFCINE 84
[Close]
BLAST of EMLSAG00000007249 vs. nr
Match: gi|17225662|gb|AAL37521.1|AF353346_1 (opsin, partial [Skogsbergia lerneri])

HSP 1 Score: 58.9214 bits (141), Expect = 1.006e-8
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMTR--SKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEE 125
            KVA+TN  +W++I T   +VV+     ++ +IT L  Q+ +  AK A C NP++Y IS  KYR+ L + L +F I E
Sbjct:    8 KVAMTNVVLWITIWTPYAVVVMTGAWGNQDTITPLFSQLPAMFAKTASCFNPVIYAISHPKYRQALNESLPWFCINE 84
[Close]
BLAST of EMLSAG00000007249 vs. nr
Match: gi|17225652|gb|AAL37516.1|AF353341_1 (opsin, partial [Skogsbergia lerneri] >gi|17225686|gb|AAL37533.1|AF353358_1 opsin, partial [Skogsbergia lerneri] >gi|17225688|gb|AAL37534.1|AF353359_1 opsin, partial [Skogsbergia lerneri] >gi|17225690|gb|AAL37535.1|AF353360_1 opsin, partial [Skogsbergia lerneri] >gi|17225712|gb|AAL37546.1|AF353371_1 opsin, partial [Skogsbergia lerneri])

HSP 1 Score: 58.5362 bits (140), Expect = 1.350e-8
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMT--RSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEHAGK 129
            KVA+TN  +W++I T    V ++    ++ +IT L+ QI S +AK A C NP+VY IS  +YR+ L + + +  I E A  
Sbjct:    8 KVAMTNVFLWITIWTPYATVAMIGVFGNQATITPLVSQIPSLVAKTASCFNPVVYAISHPRYRQALQESMPWLCIHEPADD 88
[Close]
BLAST of EMLSAG00000007249 vs. nr
Match: gi|17225684|gb|AAL37532.1|AF353357_1 (opsin, partial [Skogsbergia lerneri])

HSP 1 Score: 58.5362 bits (140), Expect = 1.399e-8
Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMTR--SKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEE 125
            KVA+TN  +W++I T   +VV+     +  +IT L  Q+ S  AK A C NP++Y IS  KYR+ L + L +F I E
Sbjct:    8 KVAMTNVILWITIWTPYAVVVMTGAWGNHDTITPLFSQLPSMFAKTASCFNPVIYAISHPKYRQALNESLPWFCINE 84
[Close]
BLAST of EMLSAG00000007249 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold71_size417697-snap-gene-3.17 (protein:Tk11815 transcript:maker-scaffold71_size417697-snap-gene-3.17-mRNA-1 annotation:"opsin")

HSP 1 Score: 74.3294 bits (181), Expect = 9.930e-17
Identity = 40/78 (51.28%), Postives = 48/78 (61.54%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMT--RSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEH 126
            KVAVTN ++W  I +    VVLM    SK SIT L+ QI +F AK A C NPI+Y +   KYRE L K+L    IEEH
Sbjct:   23 KVAVTNVTLWAGIWSPYAFVVLMAVIGSKGSITPLMSQIPAFCAKTASCFNPIIYAMGHPKYREALTKELPCLGIEEH 100

HSP 2 Score: 74.3294 bits (181), Expect = 9.930e-17
Identity = 40/78 (51.28%), Postives = 48/78 (61.54%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMT--RSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEH 126
            KVAVTN ++W  I +    VVLM    SK SIT L+ QI +F AK A C NPI+Y +   KYRE L K+L    IEEH
Sbjct:  422 KVAVTNVTLWAGIWSPYAFVVLMAVIGSKGSITPLMSQIPAFCAKTASCFNPIIYAMGHPKYREALTKELPCLGIEEH 499

HSP 3 Score: 51.9878 bits (123), Expect = 5.818e-9
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 0 
Query:    2 IVKGLNGFQISTGNALVIIVGIWVYFSFISTIALFNIWGGYIVEGL 47
            IVKG NG +I++G AL I+  IW Y   IS   L NIWGG+  EG+
Sbjct:  296 IVKGFNGVKITSGKALAILFAIWGYSVGISLPPLLNIWGGFTTEGM 341
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BLAST of EMLSAG00000007249 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold103_size370364-snap-gene-0.19 (protein:Tk07511 transcript:maker-scaffold103_size370364-snap-gene-0.19-mRNA-1 annotation:"opsin")

HSP 1 Score: 58.5362 bits (140), Expect = 2.838e-11
Identity = 34/85 (40.00%), Postives = 45/85 (52.94%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVL--MTRSKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEHAGKVHQE 133
            KVA+TN S+W    T   +V +  +    + IT L+ Q+  F AK A C NP+V+ +S  KYRE L  K   F I E A K   E
Sbjct:  817 KVAITNVSLWFLAWTPYAVVFMFPIFGKLHWITPLMSQLPIFFAKTASCFNPVVFALSHPKYREALASKCPCFGIHEQASKAADE 901
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BLAST of EMLSAG00000007249 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1125_size61249-snap-gene-0.12 (protein:Tk00350 transcript:maker-scaffold1125_size61249-snap-gene-0.12-mRNA-1 annotation:"opsin")

HSP 1 Score: 53.1434 bits (126), Expect = 2.277e-9
Identity = 27/79 (34.18%), Postives = 45/79 (56.96%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMTR--SKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEEHA 127
            KVA+TN  +W+        + ++ +    + +T ++ Q+ SF+AK A C NPIVY +S  KYRE L  ++    I+E +
Sbjct:  617 KVAITNICLWLLAWCPYATIAMVGQFGGSHLLTPVVTQLPSFLAKTASCFNPIVYAVSHPKYREALTNEIPCLGIKEES 695
[Close]
BLAST of EMLSAG00000007249 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold71_size417697-snap-gene-3.16 (protein:Tk11817 transcript:maker-scaffold71_size417697-snap-gene-3.16-mRNA-1 annotation:"long-wavelength rhodopsin")

HSP 1 Score: 51.2174 bits (121), Expect = 8.786e-9
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 0 
Query:    2 IVKGLNGFQISTGNALVIIVGIWVYFSFISTIALFNIWGGYIVEGL 47
            IVKG NG +I++G AL I+  IW Y   IS   L NIWGG+  EG+
Sbjct:  253 IVKGFNGVKITSGKALAILFAIWGYSVGISLPPLLNIWGGFTTEGM 298
[Close]
BLAST of EMLSAG00000007249 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold80_size398941-snap-gene-2.17 (protein:Tk02825 transcript:maker-scaffold80_size398941-snap-gene-2.17-mRNA-1 annotation:"opsin")

HSP 1 Score: 48.1358 bits (113), Expect = 1.061e-7
Identity = 26/77 (33.77%), Postives = 42/77 (54.55%), Query Frame = 0 
Query:   51 KVAVTNKSIWVSIRTSSTLVVLMTR--SKYSITSLLIQIISFIAKIAKCLNPIVYTISSLKYREFLIKKLCYFSIEE 125
            KV++T   +W+         VL+ +   ++ I+ L+  + S + K+A C NPI+Y IS  KYRE L  +L +  I E
Sbjct:  285 KVSLTAICLWLLAFAPYATTVLLAQFGPRHLISPLVAHMPSMLLKVAACFNPIIYAISHPKYREALALELPWLGIGE 361
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007249 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007249 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 9
Match NameE-valueIdentityDescription
gi|592792279|gb|GAXK01162289.1|1.343e-940.70TSA: Calanus finmarchicus comp655737_c0_seq1 trans... [more]
gi|592940362|gb|GAXK01018191.1|1.236e-733.33TSA: Calanus finmarchicus comp32692_c0_seq1 transc... [more]
gi|592936816|gb|GAXK01021737.1|2.782e-127.42TSA: Calanus finmarchicus comp1508152_c0_seq1 tran... [more]
gi|592937350|gb|GAXK01021203.1|3.896e+028.43TSA: Calanus finmarchicus comp2400014_c0_seq1 tran... [more]
gi|592953957|gb|GAXK01004596.1|3.910e+023.19TSA: Calanus finmarchicus comp2047341_c0_seq1 tran... [more]
gi|592910366|gb|GAXK01048009.1|6.132e+026.74TSA: Calanus finmarchicus comp1254551_c0_seq1 tran... [more]
gi|592866804|gb|GAXK01090758.1|7.648e+029.31TSA: Calanus finmarchicus comp4861085_c0_seq1 tran... [more]
gi|592930284|gb|GAXK01028261.1|8.027e+026.39TSA: Calanus finmarchicus comp1065682_c0_seq3 tran... [more]
gi|592930285|gb|GAXK01028260.1|8.036e+026.39TSA: Calanus finmarchicus comp1065682_c0_seq2 tran... [more]
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BLAST of EMLSAG00000007249 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000072492.821e-93100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s407:31011... [more]
EMLSAP000000050613.457e-1753.16pep:novel supercontig:LSalAtl2s:LSalAtl2s264:30314... [more]
EMLSAP000000103907.078e-1750.62pep:novel supercontig:LSalAtl2s:LSalAtl2s68:117168... [more]
EMLSAP000000028391.049e-1446.91pep:novel supercontig:LSalAtl2s:LSalAtl2s163:31947... [more]
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BLAST of EMLSAG00000007249 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007249 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 3
Match NameE-valueIdentityDescription
EFX63569.11.696e-735.87hypothetical protein DAPPUDRAFT_307030 [Daphnia pu... [more]
EFX76309.13.420e-737.08hypothetical protein DAPPUDRAFT_306275 [Daphnia pu... [more]
EFX63568.18.800e-734.07hypothetical protein DAPPUDRAFT_307031 [Daphnia pu... [more]
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BLAST of EMLSAG00000007249 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25
Match NameE-valueIdentityDescription
gi|325911019|gb|ADZ45237.1|2.316e-1352.56opsin, partial [Tigriopus californicus][more]
gi|17225654|gb|AAL37517.1|AF353342_14.186e-1040.23opsin, partial [Skogsbergia lerneri][more]
gi|17225702|gb|AAL37541.1|AF353366_12.826e-944.16opsin, partial [Skogsbergia lerneri][more]
gi|211922683|dbj|BAG80986.1|3.044e-943.21opsin [Branchinella kugenumaensis][more]
gi|17225704|gb|AAL37542.1|AF353367_13.616e-939.51opsin, partial [Skogsbergia lerneri] >gi|17225708|... [more]
gi|17225658|gb|AAL37519.1|AF353344_15.261e-944.16opsin, partial [Skogsbergia lerneri][more]
gi|17225666|gb|AAL37523.1|AF353348_19.037e-941.56opsin, partial [Skogsbergia lerneri][more]
gi|17225662|gb|AAL37521.1|AF353346_11.006e-840.26opsin, partial [Skogsbergia lerneri][more]
gi|17225652|gb|AAL37516.1|AF353341_11.350e-838.27opsin, partial [Skogsbergia lerneri] >gi|17225686|... [more]
gi|17225684|gb|AAL37532.1|AF353357_11.399e-841.56opsin, partial [Skogsbergia lerneri][more]

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BLAST of EMLSAG00000007249 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 5
Match NameE-valueIdentityDescription
maker-scaffold71_size417697-snap-gene-3.179.930e-1751.28protein:Tk11815 transcript:maker-scaffold71_size41... [more]
maker-scaffold103_size370364-snap-gene-0.192.838e-1140.00protein:Tk07511 transcript:maker-scaffold103_size3... [more]
maker-scaffold1125_size61249-snap-gene-0.122.277e-934.18protein:Tk00350 transcript:maker-scaffold1125_size... [more]
maker-scaffold71_size417697-snap-gene-3.168.786e-952.17protein:Tk11817 transcript:maker-scaffold71_size41... [more]
maker-scaffold80_size398941-snap-gene-2.171.061e-733.77protein:Tk02825 transcript:maker-scaffold80_size39... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s407supercontigLSalAtl2s407:310119..310804 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s407-snap-gene-2.8
Noteopsin, partial [Tigriopus californicus]
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007249 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007249EMLSAT00000007249-703096Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s407:310119..310804-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007249-690015 ID=EMLSAG00000007249-690015|Name=EMLSAG00000007249|organism=Lepeophtheirus salmonis|type=gene|length=686bp|location=Sequence derived from alignment at LSalAtl2s407:310119..310804- (Lepeophtheirus salmonis)
ATGATTGTGAAAGGATTGAATGGATTCCAAATATCTACCGGGAATGCATT
GGTAATTATTGTGGGTATCTGGGTTTACTTCTCATTTATATCCACAATAG
CTCTCTTCAACATTTGGGGTGGCTATATTGTTGAGGGTCTCCATTACAGT
TTTTTCCAATGATTAATTGACTGATAACATGAACAAAACAACCTAAATCC
TTTTCATCTTTGCATTTATGCATGTGTTACCCATAACCCTGATCTTCTGT
TCTATAACTCCATTGTCAATGCCGTTTGGTCACATAAAATAGCTCTTAAA
CTACAAGCAAAGGAAATACATGTAGAATTTCTTCGTTCCAATATCCAGTA
TTATAACTATTCATATCACAACCTACTTTTATTTTTTGACGATATCAAAC
CNATCTTCTGAAATCAGTAAAGGTGGCAGTGACAAATAAGTCTATTTGGG
TGAGTATTCGGACTTCATCTACTCTGGTTGTCCTCATGACTGTCTAGCGA
AGCAAATACTCAATAACTTCTCTCTTGATCCAAATTATATCTTTTATTGC
AAAAATCGCTAAATGCTTGAATCCAATCGTGTATACAATAAGCTCTCTCA
AATATAGAGAGTTTTTGATAAAGAAACTCTGTTACTTTAGTATTGAAGAA
CACGCAGGAAAAGTTCACCAAGAAGGAAGTTGTTAA
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