EMLSAG00000007575, EMLSAG00000007575-690341 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007575
Unique NameEMLSAG00000007575-690341
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000007575 vs. C. finmarchicus
Match: gi|592838457|gb|GAXK01119087.1| (TSA: Calanus finmarchicus comp1062647_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 61.6178 bits (148), Expect = 4.755e-12
Identity = 47/64 (73.44%), Postives = 50/64 (78.12%), Query Frame = 0 
Query:   45 TACIVKGSYCNCHYCKCEXXXXXXXXXXXXXXXXXXX--XSTQGEYCHCDYCKCKHGFGSTGYG 106
            TACIVKGSYC CHYCKCEKGH+HC G+G G G    Y  GS +GEYCHCDYCKCKHGFG  G G
Sbjct:  132 TACIVKGSYCQCHYCKCEKGHIHCKGHGHGGGYGKKYCYGSMEGEYCHCDYCKCKHGFGQDGKG 323
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BLAST of EMLSAG00000007575 vs. C. finmarchicus
Match: gi|592895392|gb|GAXK01062983.1| (TSA: Calanus finmarchicus comp542777_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 59.3066 bits (142), Expect = 2.102e-11
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 0 
Query:   45 TACIVKGSYCNCHYCKCEXXXXXXXXXXXXXXXXXXXX----STQGEYCHCDYCKCKHGFGSTGY 105
            TACIVKGSYC CHYCKCEKG +HC   G  +   +       S +GEYCHCDYC+CKHG+G +G+
Sbjct:  144 TACIVKGSYCQCHYCKCEKGQLHCRAKGLAFHHGFGKKYCYGSMEGEYCHCDYCRCKHGYGLSGH 338
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BLAST of EMLSAG00000007575 vs. C. finmarchicus
Match: gi|592895393|gb|GAXK01062982.1| (TSA: Calanus finmarchicus comp542777_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 58.151 bits (139), Expect = 7.897e-11
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 0 
Query:   45 TACIVKGSYCNCHYCKCEXXXXXXXXXXXXXXXXXXXX----STQGEYCHCDYCKCKHGFGSTGY 105
            T+C+VKGSYC CHYCKCEKG +HC   G  +   +       S +GEYCHCDYC+CKHG+G +G+
Sbjct:  211 TSCVVKGSYCQCHYCKCEKGQLHCRAKGLAFHHGFGKKYCYGSMEGEYCHCDYCRCKHGYGLSGH 405
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BLAST of EMLSAG00000007575 vs. C. finmarchicus
Match: gi|592871477|gb|GAXK01086085.1| (TSA: Calanus finmarchicus comp1342811_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 54.299 bits (129), Expect = 1.053e-9
Identity = 42/57 (73.68%), Postives = 44/57 (77.19%), Query Frame = 0 
Query:   45 TACIVKGSYCNCHYCKCEXXXXXXXXXXXXXXXXXX--XXSTQGEYCHCDYCKCKHG 99
            +ACIVKGSYCNCHYCKCEKG V C GYG G G       GS +GEYCHCDYCKCKHG
Sbjct:  139 SACIVKGSYCNCHYCKCEKGQVGCKGYGHGGGYGKSYCTGSMEGEYCHCDYCKCKHG 309
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BLAST of EMLSAG00000007575 vs. C. finmarchicus
Match: gi|592795135|gb|GAXK01159433.1| (TSA: Calanus finmarchicus comp1326893_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 50.8322 bits (120), Expect = 1.987e-8
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 0 
Query:   45 TACIVKGSYCNCHYCKCEXXXXXXXXXXXXXXXXXXXX-----STQGEYCHCDYCKCKHGF 100
            T+C VKGSYC+CHYCKC+ G +HC  +G               S +GE+CHCDYCKCKHGF
Sbjct:   52 TSCSVKGSYCSCHYCKCDHGQIHCQKHGATSLMHGHGKHYCYGSMEGEHCHCDYCKCKHGF 234
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BLAST of EMLSAG00000007575 vs. C. finmarchicus
Match: gi|592795136|gb|GAXK01159432.1| (TSA: Calanus finmarchicus comp1326893_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 50.8322 bits (120), Expect = 2.596e-8
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 0 
Query:   45 TACIVKGSYCNCHYCKCEXXXXXXXXXXXXXXXXXXXX-----STQGEYCHCDYCKCKHGF 100
            T+C VKGSYC+CHYCKC+ G +HC  +G               S +GE+CHCDYCKCKHGF
Sbjct:   52 TSCSVKGSYCSCHYCKCDHGQIHCQKHGATSFMHGHGKNYCYGSMEGEHCHCDYCKCKHGF 234
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BLAST of EMLSAG00000007575 vs. C. finmarchicus
Match: gi|592817853|gb|GAXK01136715.1| (TSA: Calanus finmarchicus comp717971_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 50.8322 bits (120), Expect = 3.232e-8
Identity = 40/56 (71.43%), Postives = 43/56 (76.79%), Query Frame = 0 
Query:   45 TACIVKGSYCNCHYCKCEXXXXXXXXXXXXXXXXXXX--XSTQGEYCHCDYCKCKH 98
            TACIVKGSYCNCHYCKCEKG + C GYG G G    Y  G  +GEYCHCDYCKCK+
Sbjct:  100 TACIVKGSYCNCHYCKCEKGQISCSGYGHGGGYGKKYCYGGMEGEYCHCDYCKCKN 267
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BLAST of EMLSAG00000007575 vs. C. finmarchicus
Match: gi|592791603|gb|GAXK01162965.1| (TSA: Calanus finmarchicus comp3487398_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 48.9062 bits (115), Expect = 1.171e-7
Identity = 41/60 (68.33%), Postives = 44/60 (73.33%), Query Frame = 0 
Query:   45 TACIVKGSYCNCHYCKCEX------XXXXXXXXXXXXXXXXXXXSTQGEYCHCDYCKCKH 98
            T+CIVKGSYC CHYCKCEK            G+ KGYGK YCYGS +GEYCHCDYCKCKH
Sbjct:   81 TSCIVKGSYCQCHYCKCEKGHLHCGSKKGGYGHDKGYGKAYCYGSMEGEYCHCDYCKCKH 260
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BLAST of EMLSAG00000007575 vs. C. finmarchicus
Match: gi|592882478|gb|GAXK01075897.1| (TSA: Calanus finmarchicus comp1908966_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 48.521 bits (114), Expect = 2.031e-7
Identity = 40/60 (66.67%), Postives = 44/60 (73.33%), Query Frame = 0 
Query:   45 TACIVKGSYCNCHYCKCEX------XXXXXXXXXXXXXXXXXXXSTQGEYCHCDYCKCKH 98
            T+C+VKGSYC CHYCKCE             G+ KGYGKKYCYGS +GEYCHCDYCKCKH
Sbjct:  229 TSCVVKGSYCQCHYCKCEHGHLHCGSKKGGYGHDKGYGKKYCYGSMEGEYCHCDYCKCKH 408
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BLAST of EMLSAG00000007575 vs. C. finmarchicus
Match: gi|592935761|gb|GAXK01022792.1| (TSA: Calanus finmarchicus comp1636551_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 36.965 bits (84), Expect = 4.173e-3
Identity = 35/59 (59.32%), Postives = 39/59 (66.10%), Query Frame = 0 
Query:   45 TACIVKGSYCNCHYCKCEX------XXXXXXXXXXXXXXXXXXXSTQGEYCHCDYCKCK 97
            TA +VKGS C CH C+CEK           G  G GYGK YCYGS +GEYC+CDYCKCK
Sbjct:   23 TALVVKGSTCACHKCECEKGQINHCSSGGYGKGGGGYGKNYCYGSMEGEYCNCDYCKCK 199
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BLAST of EMLSAG00000007575 vs. L. salmonis peptides
Match: EMLSAP00000007575 (pep:novel supercontig:LSalAtl2s:LSalAtl2s437:210985:211376:-1 gene:EMLSAG00000007575 transcript:EMLSAT00000007575 description:"maker-LSalAtl2s437-augustus-gene-2.13")

HSP 1 Score: 209.534 bits (532), Expect = 7.557e-71
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 
Query:    1 MASIVSHPLIFSILLFVVLVAVQEASADSYGHGGHGHGHQKGHGTACIVKGSYCNCHYCKCEKGHVHCGGYGKGYGKKYCYGSTQGEYCHCDYCKCKHGFGSTGYGGCH 109
            MASIVSHPLIFSILLFVVLVAVQEASADSYGHGGHGHGHQKGHGTACIVKGSYCNCHYCKCEKGHVHCGGYGKGYGKKYCYGSTQGEYCHCDYCKCKHGFGSTGYGGCH
Sbjct:    1 MASIVSHPLIFSILLFVVLVAVQEASADSYGHGGHGHGHQKGHGTACIVKGSYCNCHYCKCEKGHVHCGGYGKGYGKKYCYGSTQGEYCHCDYCKCKHGFGSTGYGGCH 109
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BLAST of EMLSAG00000007575 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold15_size728074-processed-gene-2.0 (protein:Tk08846 transcript:snap_masked-scaffold15_size728074-processed-gene-2.0-mRNA-1 annotation:"protein isoform a")

HSP 1 Score: 122.479 bits (306), Expect = 5.085e-34
Identity = 58/96 (60.42%), Postives = 71/96 (73.96%), Query Frame = 0 
Query:   12 SILLFVVLVAVQEASADSYGHGGHGHGHQKGHGTACIVKGSYCNCHYCKCEKGHVHCGGYGKGYGKKYCYG-STQGEYCHCDYCKCKHGFGSTGYG 106
            ++  F++LV  Q +SA +      GHGH K HGTACIVKGSYC+CH+CKCEKGH+HC G+GK    K     S +GEYCHCDYCKCKHGFG++GYG
Sbjct:  902 AVAFFLLLVLDQPSSAAA------GHGH-KAHGTACIVKGSYCSCHHCKCEKGHIHCDGHGKKGYGKKYCYGSMEGEYCHCDYCKCKHGFGTSGYG 990
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BLAST of EMLSAG00000007575 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold68_size422247-snap-gene-2.12 (protein:Tk11391 transcript:maker-scaffold68_size422247-snap-gene-2.12-mRNA-1 annotation:"histone-lysine n- h3 lysine-79 specific")

HSP 1 Score: 87.0409 bits (214), Expect = 1.340e-22
Identity = 65/110 (59.09%), Postives = 75/110 (68.18%), Query Frame = 0 
Query:    1 MASIVSHPLIFSILLFVVLVAVQEASADSYGHGGHGHGHQKGHGTACIVKGSYCNCHYCKCEKGHVH-CGGYGKGYGKKYCYGSTQGEYCHCDYCKCKHGFGSTGYGGCH 109
            + +I S  L+ S +   +++ +      S   GGH     K HGTACIVKGSYC+CHYCKCEKGH+H  G   KGYGKKYCYGS  GEYCHCDYCKCKHGFG  GY GCH
Sbjct:  138 IMAISSKTLLASTVALFLVLVLVLDQTQSVQAGGH-----KAHGTACIVKGSYCSCHYCKCEKGHIHCGGYGKKGYGKKYCYGSMSGEYCHCDYCKCKHGFGGKGY-GCH 241
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007575 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007575 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 12
Match NameE-valueIdentityDescription
gi|592838457|gb|GAXK01119087.1|4.755e-1273.44TSA: Calanus finmarchicus comp1062647_c0_seq1 tran... [more]
gi|592895392|gb|GAXK01062983.1|2.102e-1158.46TSA: Calanus finmarchicus comp542777_c0_seq2 trans... [more]
gi|592895393|gb|GAXK01062982.1|7.897e-1155.38TSA: Calanus finmarchicus comp542777_c0_seq1 trans... [more]
gi|592871477|gb|GAXK01086085.1|1.053e-973.68TSA: Calanus finmarchicus comp1342811_c0_seq1 tran... [more]
gi|592795135|gb|GAXK01159433.1|1.987e-854.10TSA: Calanus finmarchicus comp1326893_c0_seq2 tran... [more]
gi|592795136|gb|GAXK01159432.1|2.596e-854.10TSA: Calanus finmarchicus comp1326893_c0_seq1 tran... [more]
gi|592817853|gb|GAXK01136715.1|3.232e-871.43TSA: Calanus finmarchicus comp717971_c0_seq1 trans... [more]
gi|592791603|gb|GAXK01162965.1|1.171e-768.33TSA: Calanus finmarchicus comp3487398_c0_seq1 tran... [more]
gi|592882478|gb|GAXK01075897.1|2.031e-766.67TSA: Calanus finmarchicus comp1908966_c0_seq1 tran... [more]
gi|592935761|gb|GAXK01022792.1|4.173e-359.32TSA: Calanus finmarchicus comp1636551_c0_seq1 tran... [more]

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BLAST of EMLSAG00000007575 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000075757.557e-71100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s437:21098... [more]
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BLAST of EMLSAG00000007575 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007575 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007575 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007575 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
snap_masked-scaffold15_size728074-processed-gene-2.05.085e-3460.42protein:Tk08846 transcript:snap_masked-scaffold15_... [more]
maker-scaffold68_size422247-snap-gene-2.121.340e-2259.09protein:Tk11391 transcript:maker-scaffold68_size42... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s437supercontigLSalAtl2s437:210985..211376 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s437-augustus-gene-2.13
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007575 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007575EMLSAT00000007575-703422Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s437:210985..211376-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007575-690341 ID=EMLSAG00000007575-690341|Name=EMLSAG00000007575|organism=Lepeophtheirus salmonis|type=gene|length=392bp|location=Sequence derived from alignment at LSalAtl2s437:210985..211376- (Lepeophtheirus salmonis)
ATGGCTTCCATCGTCTCTCATCCTCTCATCTTCTCCATCCTTCTTTTCGT
CGTACTTGTTGCAGTCCAAGAAGCCTCCGCAGATTCTTATGGACATGGTG
GTCACGGCCACGGCCATCAAAAAGGCCACGGAACAGCTTGTATTGTCAAA
GGATCCTACTGTAACTGTCATTACTGCAAATGCGAAAAAGGACACGTTCA
TTGCGGAGGATATGGAAAGGGCTATGGTAAGGAGGCTATTATTTGATACC
CACAAATTTTATCCTTAACGTTATTCTATGTTGTATAGGTAAAAAGTACT
GCTATGGAAGTACACAGGGTGAATACTGCCACTGTGATTACTGCAAATGT
AAGCATGGTTTCGGTTCAACCGGCTATGGTGGATGCCACTAA
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