EMLSAG00000008281, EMLSAG00000008281-691047 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000008281 vs. C. finmarchicus
Match: gi|592886534|gb|GAXK01071841.1| (TSA: Calanus finmarchicus comp1288769_c0_seq1 transcribed RNA sequence) HSP 1 Score: 181.8 bits (460), Expect = 5.198e-54 Identity = 89/144 (61.81%), Postives = 101/144 (70.14%), Query Frame = 0 Query: 111 LDVMFDCYRVSRLSYASVVTYDGCFVDNXNGDMNRLTGIFSA--TVEGIYQFSFTAKYVSSSRGRFGAWSDIYVNDTVIADSQREYNARSNL-ETESSTHTVLVYFPIRMNHQVKVQFNKDGSSYIHSDGDHDVHFTGRRVGPL 251 L MFDC R SR +V YD C VD G MN +GIF+A T GIYQ SFTAKYV++S GRFGAWSD++VND VIADSQREYN TESSTHTV+ +PI N ++VQFNKDG SYIHSD DHDVHFT RR+ L Sbjct: 83 LPTMFDCTRTSRFQSRGIVNYDECLVDTTGGSMNITSGIFTASPTQGGIYQISFTAKYVANSNGRFGAWSDVFVNDIVIADSQREYNGYGGKSRTESSTHTVMALYPIHGNDTIRVQFNKDGYSYIHSDKDHDVHFTARRISDL 514
BLAST of EMLSAG00000008281 vs. C. finmarchicus
Match: gi|592856500|gb|GAXK01101044.1| (TSA: Calanus finmarchicus comp7287_c1_seq3 transcribed RNA sequence) HSP 1 Score: 51.9878 bits (123), Expect = 5.262e-7 Identity = 45/154 (29.22%), Postives = 80/154 (51.95%), Query Frame = 0 Query: 108 PDSLDVMFDCYRVSRLSYASV-VTYDGCFVDNXNGDMNRLTGIFSATVEGIYQFSFTAKYVSSSRGRFGAWSDIYVNDTVIADSQREYNARSNLETESS--------THTVLVYFPIRMNHQVKVQFNKDGS-SYIHSDGDHDVHFTGRRVGPL 251 PD +F C R+S S S V+Y C V+ +G ++ +G F+ +G+Y+ +FTA+ +S+ G+ +D+YVND ++ S +NL+T S T+T+ + + ++ +V V N G+ S I S ++ + FTG + L Sbjct: 446 PD----VFSCKRMSGYSDESAPVSYTACDVEQPSGLVDLDSGKFTVQKDGVYRLTFTAR-MSAMNGQI-VRADMYVNDVLVGRSS------ANLDTSDSTTILDLETTNTLDMNYELKAGDEVYVMLNYVGTMSLIQSSMNYQIFFTGEWIRAL 871
BLAST of EMLSAG00000008281 vs. C. finmarchicus
Match: gi|592856499|gb|GAXK01101045.1| (TSA: Calanus finmarchicus comp7287_c1_seq4 transcribed RNA sequence) HSP 1 Score: 51.9878 bits (123), Expect = 5.664e-7 Identity = 43/148 (29.05%), Postives = 78/148 (52.70%), Query Frame = 0 Query: 114 MFDCYRVSRLSYASV-VTYDGCFVDNXNGDMNRLTGIFSATVEGIYQFSFTAKYVSSSRGRFGAWSDIYVNDTVIADSQREYNARSNLETESS--------THTVLVYFPIRMNHQVKVQFNKDGS-SYIHSDGDHDVHFTGRRVGPL 251 +F C R+S S S V+Y C V+ +G ++ +G F+ +G+Y+ +FTA+ +S+ G+ +D+YVND ++ S +NL+T S T+T+ + + ++ +V V N G+ S I S ++ + FTG + L Sbjct: 437 VFSCKRMSGYSDESAPVSYTACDVEQPSGLVDLDSGKFTVQKDGVYRLTFTAR-MSAMNGQI-VRADMYVNDVLVGRSS------ANLDTSDSTTILDLETTNTLDMNYELKAGDEVYVMLNYVGTMSLIQSSMNYQIFFTGEWIRAL 856
BLAST of EMLSAG00000008281 vs. C. finmarchicus
Match: gi|592856501|gb|GAXK01101043.1| (TSA: Calanus finmarchicus comp7287_c1_seq2 transcribed RNA sequence) HSP 1 Score: 45.4394 bits (106), Expect = 7.312e-5 Identity = 42/151 (27.81%), Postives = 76/151 (50.33%), Query Frame = 0 Query: 114 MFDCYRVSRLSYASV-VTYDGCFVDNXNGDMNRLTGIFSATVEGIYQFSFTAKYVSSSRGRFGAWSDIYVNDTVIADSQREYNARS-----------NLETESSTHTVLVYFPIRMNHQVKVQFNKDGS-SYIHSDGDHDVHFTGRRVGPL 251 +F C R+S S S V+Y C V+ +G ++ +G F+ +G+Y+ +FTA+ +S+ G+ +D++VND +I S + +LET T+T+ + ++ +V V N G+ S I S ++ + FTG + L Sbjct: 437 VFSCKRMSGYSDESAPVSYTACDVEQPSGLVDLDSGKFTVQRDGVYRLTFTAR-MSAMNGQI-IRTDMFVNDVLIGRSSANLDTFDTQTNTTSTTVLDLET---TNTLNQMYELKAGDEVYVNVNYVGTMSLIQSSMNYQIFFTGEWIRAL 874
BLAST of EMLSAG00000008281 vs. C. finmarchicus
Match: gi|592856502|gb|GAXK01101042.1| (TSA: Calanus finmarchicus comp7287_c1_seq1 transcribed RNA sequence) HSP 1 Score: 45.4394 bits (106), Expect = 7.312e-5 Identity = 44/157 (28.03%), Postives = 78/157 (49.68%), Query Frame = 0 Query: 108 PDSLDVMFDCYRVSRLSYASV-VTYDGCFVDNXNGDMNRLTGIFSATVEGIYQFSFTAKYVSSSRGRFGAWSDIYVNDTVIADSQREYNARS-----------NLETESSTHTVLVYFPIRMNHQVKVQFNKDGS-SYIHSDGDHDVHFTGRRVGPL 251 PD +F C R+S S S V+Y C V+ +G ++ +G F+ +G+Y+ +FTA+ +S+ G+ +D++VND +I S + +LET T+T+ + ++ +V V N G+ S I S ++ + FTG + L Sbjct: 446 PD----VFSCKRMSGYSDESAPVSYTACDVEQPSGLVDLDSGKFTVQRDGVYRLTFTAR-MSAMNGQI-IRTDMFVNDVLIGRSSANLDTFDTQTNTTSTTVLDLET---TNTLNQMYELKAGDEVYVNVNYVGTMSLIQSSMNYQIFFTGEWIRAL 889
BLAST of EMLSAG00000008281 vs. C. finmarchicus
Match: gi|592843884|gb|GAXK01113660.1| (TSA: Calanus finmarchicus comp466845_c0_seq1 transcribed RNA sequence) HSP 1 Score: 43.5134 bits (101), Expect = 4.640e-4 Identity = 38/144 (26.39%), Postives = 62/144 (43.06%), Query Frame = 0 Query: 115 FDCYRVSRLSYASVVTYDGCFVDNXNGDMNRLTGIFSATVEGIYQFSFTAKYVSSSRGRFGAWSDIYV----NDTVIADSQREYNARSNLETESSTH---TVLVYFPIRMNHQVKVQF---NKDGSSYIHSDGDHDVHFTGRRV 248 F C++ + + V Y C + D N TGIF G+YQ +FT +V S RG +DIY+ D +I S + + + H +++V ++ +V V G S + SD +HFTG ++ Sbjct: 1953 FSCHKTDSHTSETKVFYSDCSISTPGMDSN--TGIFQVNEAGVYQITFTGFFV-SLRGHM-VSADIYLRTGDKDEIIGRSSAKTDEDGVFGRDDDLHATTSIIVMENLKKGDKVFVSMVISGPHGDSKMESDFSRKIHFTGLKI 2372
BLAST of EMLSAG00000008281 vs. C. finmarchicus
Match: gi|592843883|gb|GAXK01113661.1| (TSA: Calanus finmarchicus comp466845_c0_seq2 transcribed RNA sequence) HSP 1 Score: 42.743 bits (99), Expect = 6.037e-4 Identity = 39/148 (26.35%), Postives = 64/148 (43.24%), Query Frame = 0 Query: 115 FDCYRVSRLSYASVVTYDGCFVDNXNGDMNRLTGIFSATVEGIYQFSFTAKYVSSSRGRFGAWSDIYVNDTVIADSQREYNARSNLETES-----------STHTVLVYFPIRMNHQVKVQF---NKDGSSYIHSDGDHDVHFTGRRV 248 F C++ + + V Y C + D N TGIF G+YQ +FT +V S RG +DIY+ + E RS+ +T+ +T +++V ++ +V V G S + SD +HFTG ++ Sbjct: 698 FSCHKTDSHTSETKVFYSDCSISTPGMDSN--TGIFQVNEAGVYQITFTGFFV-SLRGHM-VSADIYLR----TGDKDEIIGRSSAKTDEDGVFGRDDDLHATTSIIVMENLKKGDKVFVSMVISGPHGDSKMESDFSRKIHFTGLKI 1117
BLAST of EMLSAG00000008281 vs. C. finmarchicus
Match: gi|592754733|gb|GAXK01199680.1| (TSA: Calanus finmarchicus comp181210_c2_seq2 transcribed RNA sequence) HSP 1 Score: 43.1282 bits (100), Expect = 6.538e-4 Identity = 54/199 (27.14%), Postives = 85/199 (42.71%), Query Frame = 0 Query: 59 SVTYSDLKKVMNEVELVESRSDMQFKIINQINQTAYKFKEEARSAAISGPDSLDVMFDCYRVSRLSYASVVTYDGCFVDNXNGDMNRLTGIFSATVEGIYQFSFTAKYVSSSRGRFGAWSDIYVNDT---------VIADSQREYNARSNLETESSTHTVLVYFPIRMNHQVKVQFNKDGSSYIHSDGDHDVHFTGRRV 248 SVT S+ K+ EV+L+ + I I + + +S A S V D +VS V+TYD C V N MN TG + V+G Y SFTA VSS+ W +Y +I + QR+ E + + ++ + ++ QV V++ G S+++S+ + FTG V Sbjct: 1133 SVTRSEFSKIKPEVDLIATD-------ITTIRNGMSRMTKAVQSIADPPRFSCGVTGDEIKVS-----GVITYDECTV-NREKMMNAGTGHATVPVDGDYLLSFTANMVSSNSQAI--WCALYKQSPGDEGWQVLGMINNYQRDAGE----EDDRDSGSLSILATLKEGDQVWVEWRGYGESFLYSNPYKLISFTGYMV 1672
BLAST of EMLSAG00000008281 vs. C. finmarchicus
Match: gi|592754734|gb|GAXK01199679.1| (TSA: Calanus finmarchicus comp181210_c2_seq1 transcribed RNA sequence) HSP 1 Score: 43.1282 bits (100), Expect = 7.278e-4 Identity = 54/199 (27.14%), Postives = 85/199 (42.71%), Query Frame = 0 Query: 59 SVTYSDLKKVMNEVELVESRSDMQFKIINQINQTAYKFKEEARSAAISGPDSLDVMFDCYRVSRLSYASVVTYDGCFVDNXNGDMNRLTGIFSATVEGIYQFSFTAKYVSSSRGRFGAWSDIYVNDT---------VIADSQREYNARSNLETESSTHTVLVYFPIRMNHQVKVQFNKDGSSYIHSDGDHDVHFTGRRV 248 SVT S+ K+ EV+L+ + I I + + +S A S V D +VS V+TYD C V N MN TG + V+G Y SFTA VSS+ W +Y +I + QR+ E + + ++ + ++ QV V++ G S+++S+ + FTG V Sbjct: 2699 SVTRSEFSKIKPEVDLIATD-------ITTIRNGMSRMTKAVQSIADPPRFSCGVTGDEIKVS-----GVITYDECTV-NREKMMNAGTGHATVPVDGDYLLSFTANMVSSNSQAI--WCALYKQSPGDEGWQVLGMINNYQRDAGE----EDDRDSGSLSILATLKEGDQVWVEWRGYGESFLYSNPYKLISFTGYMV 3238
BLAST of EMLSAG00000008281 vs. C. finmarchicus
Match: gi|592947482|gb|GAXK01011071.1| (TSA: Calanus finmarchicus comp5762819_c0_seq1 transcribed RNA sequence) HSP 1 Score: 34.6538 bits (78), Expect = 8.679e-2 Identity = 16/50 (32.00%), Postives = 25/50 (50.00%), Query Frame = 0 Query: 115 FDCYRVSRLSYASVVTYDGCFVDNXNGDMNRLTGIFSATVEGIYQFSFTA 164 F C++ + + ++Y C V MN+ TGIF G+YQ +FT Sbjct: 201 FSCHKTESHTGETKLSYSDCSVTTPG--MNKDTGIFLVKEPGVYQITFTG 344
BLAST of EMLSAG00000008281 vs. L. salmonis peptides
Match: EMLSAP00000008281 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4:634550:635694:1 gene:EMLSAG00000008281 transcript:EMLSAT00000008281 description:"augustus_masked-LSalAtl2s4-processed-gene-6.3") HSP 1 Score: 520.005 bits (1338), Expect = 0.000e+0 Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0 Query: 1 MVHEEDELPLGADQYLRKLLYQKSTLDRFVSGIKIAIIGISLILSIYSVVYCNKLHHESVTYSDLKKVMNEVELVESRSDMQFKIINQINQTAYKFKEEARSAAISGPDSLDVMFDCYRVSRLSYASVVTYDGCFVDNXNGDMNRLTGIFSATVEGIYQFSFTAKYVSSSRGRFGAWSDIYVNDTVIADSQREYNARSNLETESSTHTVLVYFPIRMNHQVKVQFNKDGSSYIHSDGDHDVHFTGRRVGPLK 252 MVHEEDELPLGADQYLRKLLYQKSTLDRFVSGIKIAIIGISLILSIYSVVYCNKLHHESVTYSDLKKVMNEVELVESRSDMQFKIINQINQTAYKFKEEARSAAISGPDSLDVMFDCYRVSRLSYASVVTYDGCFVDNXNGDMNRLTGIFSATVEGIYQFSFTAKYVSSSRGRFGAWSDIYVNDTVIADSQREYNARSNLETESSTHTVLVYFPIRMNHQVKVQFNKDGSSYIHSDGDHDVHFTGRRVGPLK Sbjct: 1 MVHEEDELPLGADQYLRKLLYQKSTLDRFVSGIKIAIIGISLILSIYSVVYCNKLHHESVTYSDLKKVMNEVELVESRSDMQFKIINQINQTAYKFKEEARSAAISGPDSLDVMFDCYRVSRLSYASVVTYDGCFVDNXNGDMNRLTGIFSATVEGIYQFSFTAKYVSSSRGRFGAWSDIYVNDTVIADSQREYNARSNLETESSTHTVLVYFPIRMNHQVKVQFNKDGSSYIHSDGDHDVHFTGRRVGPLK 252
BLAST of EMLSAG00000008281 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold126_size328755-snap-gene-0.10 (protein:Tk06899 transcript:maker-scaffold126_size328755-snap-gene-0.10-mRNA-1 annotation:"AGAP001552-PA") HSP 1 Score: 246.514 bits (628), Expect = 1.098e-77 Identity = 129/244 (52.87%), Postives = 165/244 (67.62%), Query Frame = 0 Query: 11 GADQYLRKLLYQKSTLDRFVSGIKIAIIGISLILSIYSVVYCNKLHHESVTYSDLKKV---MNEVELVESRSDMQFKIINQINQTAYKFKEEARSAAISGPDSLDVMFDCYRVSRLSYASVVTYDGCFVDNXNGDMNRLTGIFSATVEGIYQFSFTAKYVSSSRGRFGAWSDIYVNDTVIADSQREYNARSNLETESSTHTVLVYFPIRMNHQVKVQFNKDGSSYIHSDGDHDVHFTGRRVGPL 251 GAD +L KL+ +KS +D SG KI IG++LILSIYSV C++ + S+ SDL+ + + + E R +Q K+I +N++ +E + +MFDCYR +RLS A V++YDGCFVD G MN TGIF+ G+YQ SFTAKYVSSS+GRFGAWSDIYVN+TV+ADSQREYN +ESSTHTV+V +P+ VKV+FNKDGSSYIHSD DHDVHFT RR+ L Sbjct: 424 GADYFLMKLMERKSLVDTLWSGAKILGIGLALILSIYSVYACSQ--NRSLGGSDLEDISHLKSSFQDDEIRESIQLKMIKALNKSIRAVEENMTRLRVV------IMFDCYRTTRLSQARVISYDGCFVDTTQGAMNSNTGIFTVKDPGVYQLSFTAKYVSSSKGRFGAWSDIYVNETVVADSQREYNGNEISTSESSTHTVMVIYPLIFGDVVKVKFNKDGSSYIHSDNDHDVHFTARRISDL 659 The following BLAST results are available for this feature:
BLAST of EMLSAG00000008281 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000008281 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 15
Pagesback to top
BLAST of EMLSAG00000008281 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000008281 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000008281 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000008281 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000008281 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s4:634550..635694+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000008281-691047 ID=EMLSAG00000008281-691047|Name=EMLSAG00000008281|organism=Lepeophtheirus salmonis|type=gene|length=1145bp|location=Sequence derived from alignment at LSalAtl2s4:634550..635694+ (Lepeophtheirus salmonis)back to top Add to Basket
|