EMLSAG00000008386, EMLSAG00000008386-691152 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008386
Unique NameEMLSAG00000008386-691152
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000008386 vs. C. finmarchicus
Match: gi|592845724|gb|GAXK01111820.1| (TSA: Calanus finmarchicus comp53118_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.477e-1
Identity = 45/182 (24.73%), Postives = 77/182 (42.31%), Query Frame = 0 
Query:   86 FLLCEIRDSKEYLKNHVNWEESLNIP-----PNRITSSM--QLIDPFRYQPEY---LEYLFIMDKNSKNFEENIGLINFRQLLSKWDWKGTVCPQLFLCEGGFETFSNVLPSDTTMKSSLEVSTYTIVNEDATSC-----SELNRSFIEXXXXXXXLNCNSPAFFSGAISLSEKKRPENNSL 252
            F + + R + +Y  + +    SL++P     P    +S+   L   FR Q +    ++ L + D    +F  +  +   R  ++KWD         +L EGGF+ F    P + T   +   S    V +           +L+  F+ TP P+P  N +  A  SGAI +S + +P   SL
Sbjct:  613 FFILDTRPAADYHNSSMTIPNSLSVPEMCLRPGTTAASIGKNLKVEFRSQWDRRTTVDMLILCDWTGSDFLPDKPVTVLRDAITKWDLGAEYKNPPYLLEGGFQKFLYAYPHNVTNPKARAPSEPRTVTKPVMPSLDFDYPDLDNGFMTTPSPSPN-NKSLAALNSGAIKISREPQPSQPSL 1155
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BLAST of EMLSAG00000008386 vs. C. finmarchicus
Match: gi|592845725|gb|GAXK01111819.1| (TSA: Calanus finmarchicus comp53118_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.486e-1
Identity = 45/182 (24.73%), Postives = 77/182 (42.31%), Query Frame = 0 
Query:   86 FLLCEIRDSKEYLKNHVNWEESLNIP-----PNRITSSM--QLIDPFRYQPEY---LEYLFIMDKNSKNFEENIGLINFRQLLSKWDWKGTVCPQLFLCEGGFETFSNVLPSDTTMKSSLEVSTYTIVNEDATSC-----SELNRSFIEXXXXXXXLNCNSPAFFSGAISLSEKKRPENNSL 252
            F + + R + +Y  + +    SL++P     P    +S+   L   FR Q +    ++ L + D    +F  +  +   R  ++KWD         +L EGGF+ F    P + T   +   S    V +           +L+  F+ TP P+P  N +  A  SGAI +S + +P   SL
Sbjct:  613 FFILDTRPAADYHNSSMTIPNSLSVPEMCLRPGTTAASIGKNLKVEFRSQWDRRTTVDMLILCDWTGSDFLPDKPVTVLRDAITKWDLGAEYKNPPYLLEGGFQKFLYAYPHNVTNPKARAPSEPRTVTKPVMPSLDFDYPDLDNGFMTTPSPSPN-NKSLAALNSGAIKISREPQPSQPSL 1155
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BLAST of EMLSAG00000008386 vs. C. finmarchicus
Match: gi|592845726|gb|GAXK01111818.1| (TSA: Calanus finmarchicus comp53118_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.486e-1
Identity = 45/182 (24.73%), Postives = 77/182 (42.31%), Query Frame = 0 
Query:   86 FLLCEIRDSKEYLKNHVNWEESLNIP-----PNRITSSM--QLIDPFRYQPEY---LEYLFIMDKNSKNFEENIGLINFRQLLSKWDWKGTVCPQLFLCEGGFETFSNVLPSDTTMKSSLEVSTYTIVNEDATSC-----SELNRSFIEXXXXXXXLNCNSPAFFSGAISLSEKKRPENNSL 252
            F + + R + +Y  + +    SL++P     P    +S+   L   FR Q +    ++ L + D    +F  +  +   R  ++KWD         +L EGGF+ F    P + T   +   S    V +           +L+  F+ TP P+P  N +  A  SGAI +S + +P   SL
Sbjct:  613 FFILDTRPAADYHNSSMTIPNSLSVPEMCLRPGTTAASIGKNLKVEFRSQWDRRTTVDMLILCDWTGSDFLPDKPVTVLRDAITKWDLGAEYKNPPYLLEGGFQKFLYAYPHNVTNPKARAPSEPRTVTKPVMPSLDFDYPDLDNGFMTTPSPSPN-NKSLAALNSGAIKISREPQPSQPSL 1155
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BLAST of EMLSAG00000008386 vs. C. finmarchicus
Match: gi|592857682|gb|GAXK01099880.1| (TSA: Calanus finmarchicus comp252216_c1_seq16 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 3.706e+0
Identity = 18/44 (40.91%), Postives = 23/44 (52.27%), Query Frame = 0 
Query:   49 SHNKNHIQKESTTEEPSSSNKISVDELKKLKIIGNKRFLLCEIR 92
            SHNK H  K S   +P S     VD +KK     NK F+L E++
Sbjct:  451 SHNKQHSVKISVRVDPKSKMGFKVDGVKK----SNKDFVLIEVK 570
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BLAST of EMLSAG00000008386 vs. C. finmarchicus
Match: gi|592857683|gb|GAXK01099879.1| (TSA: Calanus finmarchicus comp252216_c1_seq15 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 3.898e+0
Identity = 18/44 (40.91%), Postives = 23/44 (52.27%), Query Frame = 0 
Query:   49 SHNKNHIQKESTTEEPSSSNKISVDELKKLKIIGNKRFLLCEIR 92
            SHNK H  K S   +P S     VD +KK     NK F+L E++
Sbjct:  451 SHNKQHSVKISVRVDPKSKMGFKVDGVKK----SNKDFVLIEVK 570
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BLAST of EMLSAG00000008386 vs. L. salmonis peptides
Match: EMLSAP00000008386 (pep:novel supercontig:LSalAtl2s:LSalAtl2s512:358979:361723:1 gene:EMLSAG00000008386 transcript:EMLSAT00000008386 description:"maker-LSalAtl2s512-snap-gene-3.26")

HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0 
Query:    1 MISLYVGIGFTLIRTISHRQILVAPNEWKLSDATIKLKKLREFLQEEYSHNKNHIQKESTTEEPSSSNKISVDELKKLKIIGNKRFLLCEIRDSKEYLKNHVNWEESLNIPPNRITSSMQLIDPFRYQPEYLEYLFIMDKNSKNFEENIGLINFRQLLSKWDWKGTVCPQLFLCEGGFETFSNVLPSDTTMKSSLEVSTYTIVNEDATSCSELNRSFIETPPPTPPLNCNSPAFFSGAISLSEKKRPENNSLSSNCSLPTAIP 263
            MISLYVGIGFTLIRTISHRQILVAPNEWKLSDATIKLKKLREFLQEEYSHNKNHIQKESTTEEPSSSNKISVDELKKLKIIGNKRFLLCEIRDSKEYLKNHVNWEESLNIPPNRITSSMQLIDPFRYQPEYLEYLFIMDKNSKNFEENIGLINFRQLLSKWDWKGTVCPQLFLCEGGFETFSNVLPSDTTMKSSLEVSTYTIVNEDATSCSELNRSFIETPPPTPPLNCNSPAFFSGAISLSEKKRPENNSLSSNCSLPTAIP
Sbjct:    1 MISLYVGIGFTLIRTISHRQILVAPNEWKLSDATIKLKKLREFLQEEYSHNKNHIQKESTTEEPSSSNKISVDELKKLKIIGNKRFLLCEIRDSKEYLKNHVNWEESLNIPPNRITSSMQLIDPFRYQPEYLEYLFIMDKNSKNFEENIGLINFRQLLSKWDWKGTVCPQLFLCEGGFETFSNVLPSDTTMKSSLEVSTYTIVNEDATSCSELNRSFIETPPPTPPLNCNSPAFFSGAISLSEKKRPENNSLSSNCSLPTAIP 263
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BLAST of EMLSAG00000008386 vs. L. salmonis peptides
Match: EMLSAP00000010295 (pep:novel supercontig:LSalAtl2s:LSalAtl2s682:21651:71350:-1 gene:EMLSAG00000010295 transcript:EMLSAT00000010295 description:"maker-LSalAtl2s682-augustus-gene-0.26")

HSP 1 Score: 105.916 bits (263), Expect = 1.913e-25
Identity = 67/194 (34.54%), Postives = 111/194 (57.22%), Query Frame = 0 
Query:   11 TLIRTISHRQILVAPNEWKLSDATIKLKKLREFLQEEYSHNKNHIQK-ESTTEEPSSSNKISVDELKKLKIIGNKRFLLCEIRDSKEYLKNHVNWEESLNIPPNRITSSM--QLIDPFRYQPE--------YLEYLFIMDKNSKNFEENIGLINFRQLLSKWDWKGTVCPQLFLCEGGFETFSNVLPSDTTMKS 193
            +LI+ IS++ I      + + +A + L+KL + LQ++Y      ++      +E     +ISV++LK LK   ++RFLLC++R+S EY  N +NW+ES+NIPP  I   +  + I+   Y+ +         ++Y+ IMD NSK+ E+N  L + + +L KW+    V   + +CEGGFE FS   P +TT K+
Sbjct:  106 SLIKHISNQTISF----FFMKNAVVLLEKLSKSLQKDYESKTKSVKDIPPVIKEEKFKYRISVNDLKNLKSSKSQRFLLCDVRNSDEYADNSINWKESVNIPPKFICPGIIPKNIEDLLYKEDKKVFANRSLMDYIIIMDNNSKHIEDNDNLKDLKDILLKWEC-DKVSHNIIICEGGFEKFSMAYPLETTKKT 294
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BLAST of EMLSAG00000008386 vs. nr
Match: gi|225712278|gb|ACO11985.1| (Ubiquitin carboxyl-terminal hydrolase 8 [Lepeophtheirus salmonis])

HSP 1 Score: 75.8702 bits (185), Expect = 1.077e-12
Identity = 51/156 (32.69%), Postives = 90/156 (57.69%), Query Frame = 0 
Query:   11 TLIRTISHRQILVAPNEWKLSDATIKLKKLREFLQEEYSHNKNHIQK-ESTTEEPSSSNKISVDELKKLKIIGNKRFLLCEIRDSKEYLKNHVNWEESLNIPPNRITSSM--QLIDPFRYQPE--------YLEYLFIMDKNSKNFEENIGLINFR 155
            +LI+ IS++ I    + + + +A + L+KL + LQ++Y      ++      +E     +ISV++LK LK   ++RFLLC++R+S EY  N +NW+ES+NIPP  I   +  + I+   Y+ +         ++Y+ IMD NSK+ E+N  L + +
Sbjct:  106 SLIKHISNQTI----SFFFMKNAVVLLEKLSKSLQKDYESKTRSVKDIPPVIKEEKFKYRISVNDLKNLKSSKSQRFLLCDVRNSDEYADNSINWKESVNIPPKFICPGIIPKNIEDLLYKEDKKLFANRSLMDYIIIMDNNSKHIEDNDNLKDLK 257
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008386 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008386 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592845724|gb|GAXK01111820.1|1.477e-124.73TSA: Calanus finmarchicus comp53118_c1_seq3 transc... [more]
gi|592845725|gb|GAXK01111819.1|1.486e-124.73TSA: Calanus finmarchicus comp53118_c1_seq2 transc... [more]
gi|592845726|gb|GAXK01111818.1|1.486e-124.73TSA: Calanus finmarchicus comp53118_c1_seq1 transc... [more]
gi|592857682|gb|GAXK01099880.1|3.706e+040.91TSA: Calanus finmarchicus comp252216_c1_seq16 tran... [more]
gi|592857683|gb|GAXK01099879.1|3.898e+040.91TSA: Calanus finmarchicus comp252216_c1_seq15 tran... [more]
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BLAST of EMLSAG00000008386 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000083860.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s512:35897... [more]
EMLSAP000000102951.913e-2534.54pep:novel supercontig:LSalAtl2s:LSalAtl2s682:21651... [more]
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BLAST of EMLSAG00000008386 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008386 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008386 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|225712278|gb|ACO11985.1|1.077e-1232.69Ubiquitin carboxyl-terminal hydrolase 8 [Lepeophth... [more]
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BLAST of EMLSAG00000008386 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s512supercontigLSalAtl2s512:358979..361723 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s512-snap-gene-3.26
Biotypeprotein_coding
EvidenceIEA
NoteUbiquitin carboxyl-terminal hydrolase 8 [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008386 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008386EMLSAT00000008386-704233Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s512:358979..361723+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008386-691152 ID=EMLSAG00000008386-691152|Name=EMLSAG00000008386|organism=Lepeophtheirus salmonis|type=gene|length=2745bp|location=Sequence derived from alignment at LSalAtl2s512:358979..361723+ (Lepeophtheirus salmonis)
ATGATATCTCTCTACGTAGGAATTGGGTTCACTCTGATAAGGAGTTATTT
CATAATCATCAGCACTTTGTTCATCATGGACATTAGTTACTTCTTTGATT
TTTTTTGTTATAGCTATTAGGTAAATTATGTAAATTTTCGCTATAGGAAA
AATAGGAATTAGGAACACTTGTTACGTACTCCCAAATATAAGACGCATTG
CTGAGATGGAAGAAAAAAAGTATCTTGTCAAGCTATAGGCAGTAGAAAAG
AAAAGATAAACATTTTATTGGAGGAGATATTTAAAGAATTAGGCCAATGA
CAGGAGGTTATTTTTTATTTGAAAAAAGTTTCATAAGTAGCAGCACTTAT
TGTTCTCTTATTATAATAATATTAATTAACTACTTAGCCATCGTCAGATT
CTAGTGGCCCCGAATGAGTGGAAATTGAGTGTATTTGGGGAATGCAATGT
TGCTTTTAAAATATAGCTCCATTAAAGAGATTAATGAGGAAGCTTCTCGC
TGTCTAAAAGGGTTACAGGGAAATCCGAAAGGATTGTGTCGCGAAATCAA
GAAATGGATGAATGAGGGACACGAATCCATGAAGGAGAATCGCAAAGAAG
AGGCATATACATACTTCTACAGATCCATGGGTATAAATTATAATGGATAT
TCCATTAATTATCACTATTATCTCTTTTCCTCTTTCCTCTCACTATTTTA
TTGTTGTAAATTCTACTAATTACTCACGAATTCTTTTCTTTTCCCCCTTC
CTCCCTTTAGAATTGTTCAAACGACTCAAGAAGATACAAGCATTTATAAG
GAACACGCATTTCTACTACGGAATGATAGGCGGAAAAATGACACTCAATG
TTGGTCATGTTTAGTTATAGAGCGTTTACGCAATACATTGTCACTATTGT
TGATGCCCGCCATTTTGGGGGCCTAAACAATCAAGTTGTACAACAATAAA
TCCCCTTTTTTATAAATATGAAGGAAAATAGTCAATTATTGGATGTCAAA
ATGGGAAACAAATAAAAAGACATAAACCTTTATCCTGTATGAAAAATCTA
TCCTTCTATTACAGAGTCAGACCTAATATCTATTCAAAATATGTTGTTAC
ATCGTTATATAATTATATTGACAAATTCTAGATACAAATTAACTATTACA
ATGGAAAAAATAGGATCTTATTCTCTAATTATCCTACTTTTCTCGTCCCA
AATCGATCAAAAACATAAAAAAATGTACAAATTTAGACATTTCATAGGGA
TTTTTAGTATATAATACATTGATTATATTCAAATTTCACTGTATATCATT
GGGATCAAGTAGTAATCAATGCAGATTTTAAGTCTTTTTATATTCTTGAA
AGACATTCAATGAAGTTTAATCAAGAATTGTCTATTTTATATAGTAAAAA
TGTTTAGTTTGTGCCCCCAAGGTGGCGGCTCCTTCAATTATCATGCAATT
TATTACGACAATGAAAACGCTCTATATTATTTGTTATAGTTGTGCATTAT
GATTTCTTCAAGTATCATAATACACTAGTGAATTTAATATCTTTGCATAA
AGTAAATACTACTACAAATGTTTCCATTCTCTTTATAGGATGCCACTATC
AAACTTAAAAAATTAAGAGAATTTTTGCAGGAGGAGTATAGTCACAATAA
AAATCATATTCAGAAAGAATCCACAACGGAAGAGCCGAGCTCAAGTAACA
AGATAAGCGTAGATGAATTGAAAAAATTGAAAATTATCGGTAATAAACGT
TTTCTGCTATGTGAAATTCGAGATTCCAAGGAATACTTGAAAAATCATGT
CAACTGGGAGGAGAGTCTAAATATTCCTCCTAATCGTATAACTTCCAGCA
TGCAGCTAATAGATCCATTTCGTTATCAGCCTGAATATCTAGAATATTTA
TTTATAATGGACAAAAATAGCAAGAATTTTGAGGAAAATATAGGTTTAAT
AAATTTTAGACAGCTACTCTCTAAGTGGGATTGGAAAGGAACTGTTTGTC
CTCAACTTTTTTTGTGCGAAGGAGGATTTGAAACGTTCTCTAACGTTTTA
CCCTCTGACACGACAATGAAGTCATCCTTAGAGGTTTCTACTTATACAAT
TGTTAATGAAGACGCCACATCATGCTCTGAACTCAATCGTAGTTTCATTG
AAACACCTCCTCCAACTCCTCCCTTAAATTGTAATAGTCCGGCATTTTTC
TCTGGAGCAATATCGCTCTCTGAAAAGAAACGACCTGAAAATAATTCTTT
GTCTTCCAATTGCTCTGTTTGTAKACTTAATCRAGGTATGATACAAGAAG
TACAAAAAAATGAATCGGATACTTTAACTCCTAATGATCTCATCGACTTA
AATATTTTCCATCATGAGAATGAAAGACTTGCTAGTGATCATATGATATG
CTCCCATGAGAGTTGTGAACWTAATCAAAACGCTGAAAGAATTAAGAACT
ATATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAAGTTAGTAGAAAACTAAATATAATTAGAAAATC
AAGAGAACAAATCTTATAATTACAATGATGGGACGATCATCAGAGGAAAA
GTGCTAATGAAAAGTTATATTGTCTTGAAGTTAATTTTATGCTTTAAYAC
AAATCTATGAAAAAAATATATATATTATGATATTGAACTCATATTTGTAA
GAATTATATATTAAATTATTTTAGCTCCCAACCGCCATACCATGA
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