EMLSAG00000008851, EMLSAG00000008851-691617 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008851
Unique NameEMLSAG00000008851-691617
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000008851 vs. C. finmarchicus
Match: gi|592955127|gb|GAXK01003426.1| (TSA: Calanus finmarchicus comp186230_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 5.204e+0
Identity = 13/38 (34.21%), Postives = 19/38 (50.00%), Query Frame = 0 
Query:   17 KVHSAMLELRNSQRNDGLSPAQRSNLMNTVNSFQYDYS 54
            ++H++ L   N +R    S    S  M T NS  YD+S
Sbjct: 1487 RIHTSSLSNHNQKREGSSSLGPESEDMKTANSVTYDFS 1600
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BLAST of EMLSAG00000008851 vs. L. salmonis peptides
Match: EMLSAP00000008851 (pep:novel supercontig:LSalAtl2s:LSalAtl2s552:133428:133975:-1 gene:EMLSAG00000008851 transcript:EMLSAT00000008851 description:"snap_masked-LSalAtl2s552-processed-gene-1.3")

HSP 1 Score: 122.094 bits (305), Expect = 6.483e-38
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 
Query:    1 MVKHLLSKDTNGYNSNKVHSAMLELRNSQRNDGLSPAQRSNLMNTVNSFQYDYSLKGIE 59
            MVKHLLSKDTNGYNSNKVHSAMLELRNSQRNDGLSPAQRSNLMNTVNSFQYDYSLKGIE
Sbjct:    1 MVKHLLSKDTNGYNSNKVHSAMLELRNSQRNDGLSPAQRSNLMNTVNSFQYDYSLKGIE 59
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BLAST of EMLSAG00000008851 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1752_size28949-snap-gene-0.4 (protein:Tk00995 transcript:maker-scaffold1752_size28949-snap-gene-0.4-mRNA-1 annotation:"PREDICTED: uncharacterized protein K02A2.6-like")

HSP 1 Score: 50.0618 bits (118), Expect = 2.144e-9
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 0 
Query:    1 MVKHLLSKDTNGYNSNKVHSAMLELRNSQRNDGLSPAQR 39
            +VK LL K    + S  +H+ +LELRNS R DGLSPAQR
Sbjct:  164 VVKRLLQKTGGNFKSEDIHAGLLELRNSPRQDGLSPAQR 202
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BLAST of EMLSAG00000008851 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold613_size124221-snap-gene-0.36 (protein:Tk11744 transcript:maker-scaffold613_size124221-snap-gene-0.36-mRNA-1 annotation:"poly protein")

HSP 1 Score: 45.8246 bits (107), Expect = 2.101e-8
Identity = 19/39 (48.72%), Postives = 27/39 (69.23%), Query Frame = 0 
Query:    1 MVKHLLSKDTNGYNSNKVHSAMLELRNSQRNDGLSPAQR 39
            ++KHL++K     N +  H+ +LELRN+ R DGLS AQR
Sbjct:   47 IIKHLVTKHDENINCDSFHAGLLELRNTPREDGLSQAQR 85
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008851 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008851 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592955127|gb|GAXK01003426.1|5.204e+034.21TSA: Calanus finmarchicus comp186230_c0_seq4 trans... [more]
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BLAST of EMLSAG00000008851 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000088516.483e-38100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s552:13342... [more]
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BLAST of EMLSAG00000008851 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008851 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008851 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008851 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold1752_size28949-snap-gene-0.42.144e-956.41protein:Tk00995 transcript:maker-scaffold1752_size... [more]
maker-scaffold613_size124221-snap-gene-0.362.101e-848.72protein:Tk11744 transcript:maker-scaffold613_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s552supercontigLSalAtl2s552:133428..133975 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s552-processed-gene-1.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008851 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008851EMLSAT00000008851-704698Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s552:133428..133975-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008851-691617 ID=EMLSAG00000008851-691617|Name=EMLSAG00000008851|organism=Lepeophtheirus salmonis|type=gene|length=548bp|location=Sequence derived from alignment at LSalAtl2s552:133428..133975- (Lepeophtheirus salmonis)
ATGGTTAAACATCTTCTCTCCAAAGACACTAATGGATATAATAGCAACAA
AGTCCACTCTGCAATGTTAGAATTAAGAAATTCACAGAGGAATGATGGTT
TATCTCCTGCTCAACGGTTATTTGGTTAACCTTTAATATCTCAAGTACCT
ACCCATTGGAAATCTTTTGACAAATGATGGCAACTTCAAGCACAGCGATA
ATTTTAGTACTATATATGTATAAAAATAAACTCAAATTACTGGTACTCAT
GTCGTAATATATGGTATAAATTAACTCAAATTGTCGAAACTCCAAATTGC
GGTAGATATTATTAACGATTTCACTCTGGAAGATGTCCCTGGAGAAACAG
AAAAAATTCTGAGGACTATTCCGAAAGAAATGGTACCATTTGACGTTGAT
GATGTTGATTCACTAAAGGAATTGTCCAACAAATTCCATTGTACTCCAGC
CAGAAAGATAAATATATTATATCAAGCTCAATAGATCCAATCTTATGAAT
ACTGTGAATTCGTTTCAATATGATTACTCTTTGAAGGGGATAGAATGA
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