EMLSAG00000009617, EMLSAG00000009617-692383 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000009617
Unique NameEMLSAG00000009617-692383
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000009617 vs. GO
Match: - (symbol:Cbx3 "Protein LOC688980" species:10116 "Rattus norvegicus" [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR008251 Pfam:PF01393 SMART:SM00300 InterPro:IPR000953 RGD:1549705 RGD:1582927 GO:GO:0005634 InterPro:IPR016197 SMART:SM00298 SUPFAM:SSF54160 eggNOG:NOG264487 OrthoDB:EOG7QRQWW InterPro:IPR017984 InterPro:IPR023780 InterPro:IPR023779 Pfam:PF00385 PRINTS:PR00504 PROSITE:PS00598 PROSITE:PS50013 GeneTree:ENSGT00510000046310 HOGENOM:HOG000089963 EMBL:AABR06033639 RefSeq:XP_003749892.1 RefSeq:XP_003753997.1 PRIDE:F7EWT2 Ensembl:ENSRNOT00000044407 GeneID:688980 KEGG:rno:688980 OMA:NISITRK Uniprot:F7EWT2)

HSP 1 Score: 43.8986 bits (102), Expect = 2.113e-5
Identity = 26/53 (49.06%), Postives = 33/53 (62.26%), Query Frame = 0 
Query:   29 KRKNISSS---NKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            KRK++S S     K K ++   D+P    R LD E IIG TDSSGEL+FL+K 
Sbjct:   90 KRKSLSDSESDGSKLKKKRDAADKPRGFARGLDFERIIGATDSSGELMFLMKW 142
[Close]
BLAST of EMLSAG00000009617 vs. GO
Match: - (symbol:LOC688980 "hypothetical protein LOC688980" species:10116 "Rattus norvegicus" [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR008251 Pfam:PF01393 SMART:SM00300 InterPro:IPR000953 RGD:1549705 RGD:1582927 GO:GO:0005634 InterPro:IPR016197 SMART:SM00298 SUPFAM:SSF54160 eggNOG:NOG264487 OrthoDB:EOG7QRQWW InterPro:IPR017984 InterPro:IPR023780 InterPro:IPR023779 Pfam:PF00385 PRINTS:PR00504 PROSITE:PS00598 PROSITE:PS50013 GeneTree:ENSGT00510000046310 HOGENOM:HOG000089963 EMBL:AABR06033639 RefSeq:XP_003749892.1 RefSeq:XP_003753997.1 PRIDE:F7EWT2 Ensembl:ENSRNOT00000044407 GeneID:688980 KEGG:rno:688980 OMA:NISITRK Uniprot:F7EWT2)

HSP 1 Score: 43.8986 bits (102), Expect = 2.113e-5
Identity = 26/53 (49.06%), Postives = 33/53 (62.26%), Query Frame = 0 
Query:   29 KRKNISSS---NKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            KRK++S S     K K ++   D+P    R LD E IIG TDSSGEL+FL+K 
Sbjct:   90 KRKSLSDSESDGSKLKKKRDAADKPRGFARGLDFERIIGATDSSGELMFLMKW 142
[Close]
BLAST of EMLSAG00000009617 vs. GO
Match: - (symbol:Cbx3 "chromobox homolog 3" species:10116 "Rattus norvegicus" [GO:0000785 "chromatin" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO] [GO:0005720 "nuclear heterochromatin" evidence=ISO] [GO:0005819 "spindle" evidence=ISO] [GO:0010369 "chromocenter" evidence=ISO] [GO:0019899 "enzyme binding" evidence=ISO] [GO:0019904 "protein domain specific binding" evidence=ISO] [GO:0042802 "identical protein binding" evidence=ISO] [GO:0045892 "negative regulation of transcription, DNA-templated" evidence=ISO] [GO:1990226 "histone methyltransferase binding" evidence=ISO] InterPro:IPR008251 Pfam:PF01393 SMART:SM00300 InterPro:IPR000953 RGD:1549705 RGD:1582927 GO:GO:0005634 InterPro:IPR016197 SMART:SM00298 SUPFAM:SSF54160 eggNOG:NOG264487 OrthoDB:EOG7QRQWW InterPro:IPR017984 InterPro:IPR023780 InterPro:IPR023779 Pfam:PF00385 PRINTS:PR00504 PROSITE:PS00598 PROSITE:PS50013 GeneTree:ENSGT00510000046310 HOGENOM:HOG000089963 EMBL:AABR06033639 RefSeq:XP_003749892.1 RefSeq:XP_003753997.1 PRIDE:F7EWT2 Ensembl:ENSRNOT00000044407 GeneID:688980 KEGG:rno:688980 OMA:NISITRK Uniprot:F7EWT2)

HSP 1 Score: 43.8986 bits (102), Expect = 2.113e-5
Identity = 26/53 (49.06%), Postives = 33/53 (62.26%), Query Frame = 0 
Query:   29 KRKNISSS---NKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            KRK++S S     K K ++   D+P    R LD E IIG TDSSGEL+FL+K 
Sbjct:   90 KRKSLSDSESDGSKLKKKRDAADKPRGFARGLDFERIIGATDSSGELMFLMKW 142
[Close]
BLAST of EMLSAG00000009617 vs. GO
Match: - (symbol:cbx1a "chromobox homolog 1a (HP1 beta homolog Drosophila)" species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR008251 Pfam:PF01393 SMART:SM00300 InterPro:IPR000953 ZFIN:ZDB-GENE-030131-4945 GO:GO:0005634 InterPro:IPR016197 SMART:SM00298 SUPFAM:SSF54160 TreeFam:TF350503 InterPro:IPR017984 InterPro:IPR023780 InterPro:IPR023779 Pfam:PF00385 PRINTS:PR00504 PROSITE:PS00598 PROSITE:PS50013 GeneTree:ENSGT00510000046310 EMBL:CR450718 Ensembl:ENSDART00000143088 OMA:ETISGTE ArrayExpress:F1QM86 Bgee:F1QM86 Uniprot:F1QM86)

HSP 1 Score: 43.8986 bits (102), Expect = 2.646e-5
Identity = 22/38 (57.89%), Postives = 26/38 (68.42%), Query Frame = 0 
Query:   41 KCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            K RK + D+P    R LD E IIG TDSSGEL+FL+K 
Sbjct:  128 KKRKDEQDKPRGFARGLDPERIIGATDSSGELMFLMKW 165
[Close]
BLAST of EMLSAG00000009617 vs. GO
Match: - (symbol:F1P6N7 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR008251 Pfam:PF01393 SMART:SM00300 InterPro:IPR000953 GO:GO:0005634 InterPro:IPR016197 SMART:SM00298 SUPFAM:SSF54160 OrthoDB:EOG7QRQWW TreeFam:TF350503 InterPro:IPR023780 Pfam:PF00385 PROSITE:PS50013 GeneTree:ENSGT00510000046310 EMBL:AAEX03000555 Ensembl:ENSCAFT00000002783 OMA:NESTWEN Uniprot:F1P6N7)

HSP 1 Score: 42.743 bits (99), Expect = 3.584e-5
Identity = 24/50 (48.00%), Postives = 30/50 (60.00%), Query Frame = 0 
Query:   29 KRKNISSSNKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            KRK++S S      +K    +P    R LD E IIG TDSSGEL+FL+K 
Sbjct:   89 KRKSVSDSKSDGCSQKRKAGKPRGFARGLDPERIIGATDSSGELMFLMKW 138
[Close]
BLAST of EMLSAG00000009617 vs. GO
Match: - (symbol:cbx3a "chromobox homolog 3a (HP1 gamma homolog, Drosophila)" species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR008251 Pfam:PF01393 SMART:SM00300 InterPro:IPR000953 ZFIN:ZDB-GENE-030131-1158 GO:GO:0005634 InterPro:IPR016197 SMART:SM00298 SUPFAM:SSF54160 OrthoDB:EOG7QRQWW TreeFam:TF350503 InterPro:IPR017984 InterPro:IPR023780 InterPro:IPR023779 Pfam:PF00385 PRINTS:PR00504 PROSITE:PS00598 PROSITE:PS50013 GeneTree:ENSGT00510000046310 KO:K11586 OMA:RESADKP EMBL:CABZ01083875 RefSeq:XP_005173826.1 UniGene:Dr.105034 Ensembl:ENSDART00000130423 GeneID:751689 KEGG:dre:751689 CTD:751689 PRO:PR:F1R193 Bgee:F1R193 Uniprot:F1R193)

HSP 1 Score: 42.743 bits (99), Expect = 5.271e-5
Identity = 22/40 (55.00%), Postives = 27/40 (67.50%), Query Frame = 0 
Query:   39 KRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            K K +K   D+P    RNL+ E IIG TDSSGEL+FL+K 
Sbjct:   97 KAKRKKEMSDKPRGFARNLEPERIIGATDSSGELMFLMKW 136
[Close]
BLAST of EMLSAG00000009617 vs. GO
Match: - (symbol:CBX3 "Uncharacterized protein" species:9823 "Sus scrofa" [GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005720 "nuclear heterochromatin" evidence=IEA] [GO:0005819 "spindle" evidence=IEA] [GO:0019904 "protein domain specific binding" evidence=IEA] [GO:0042802 "identical protein binding" evidence=IEA] [GO:0045892 "negative regulation of transcription, DNA-templated" evidence=IEA] [GO:1990226 "histone methyltransferase binding" evidence=IEA] InterPro:IPR008251 Pfam:PF01393 SMART:SM00300 InterPro:IPR000953 GO:GO:0045892 GO:GO:0005819 GO:GO:0005720 GO:GO:0005719 InterPro:IPR016197 SMART:SM00298 SUPFAM:SSF54160 OrthoDB:EOG7QRQWW TreeFam:TF350503 InterPro:IPR017984 InterPro:IPR023780 InterPro:IPR023779 Pfam:PF00385 PRINTS:PR00504 PROSITE:PS00598 PROSITE:PS50013 GeneTree:ENSGT00510000046310 KO:K11586 OMA:RESADKP EMBL:FP236743 EMBL:FP476109 RefSeq:XP_003360239.3 RefSeq:XP_005673367.1 RefSeq:XP_005673368.1 RefSeq:XP_005673369.1 RefSeq:XP_005673370.1 Ensembl:ENSSSCT00000018192 GeneID:100622432 Uniprot:F1ST98)

HSP 1 Score: 41.5874 bits (96), Expect = 1.310e-4
Identity = 19/31 (61.29%), Postives = 22/31 (70.97%), Query Frame = 0 
Query:   48 DRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            D+P    R LD E IIG TDSSGEL+FL+K 
Sbjct:  112 DKPRGFARGLDPERIIGATDSSGELMFLMKW 142
[Close]
BLAST of EMLSAG00000009617 vs. GO
Match: - (symbol:Cbx3 "Chromobox homolog 3 (HP1 gamma homolog, Drosophila)" species:10116 "Rattus norvegicus" [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR008251 Pfam:PF01393 SMART:SM00300 InterPro:IPR000953 RGD:1549705 RGD:2322491 GO:GO:0045892 GO:GO:0005819 GO:GO:0005720 GO:GO:0005719 InterPro:IPR016197 SMART:SM00298 SUPFAM:SSF54160 HOGENOM:HOG000220852 HOVERGEN:HBG000400 OrthoDB:EOG7QRQWW TreeFam:TF350503 InterPro:IPR017984 InterPro:IPR023780 InterPro:IPR023779 Pfam:PF00385 PRINTS:PR00504 PROSITE:PS00598 PROSITE:PS50013 GeneTree:ENSGT00510000046310 CTD:11335 KO:K11586 OMA:RESADKP EMBL:CH474011 eggNOG:NOG148844 EMBL:AABR06030997 EMBL:BC086601 EMBL:BC127508 RefSeq:NP_001008314.2 RefSeq:XP_006236546.1 RefSeq:XP_006236547.1 STRING:10116.ENSRNOP00000015828 Ensembl:ENSRNOT00000015828 GeneID:297093 KEGG:rno:297093 InParanoid:Q5RJK5 NextBio:642052 Genevestigator:Q5RJK5 Uniprot:Q5RJK5)

HSP 1 Score: 41.5874 bits (96), Expect = 1.392e-4
Identity = 19/31 (61.29%), Postives = 22/31 (70.97%), Query Frame = 0 
Query:   48 DRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            D+P    R LD E IIG TDSSGEL+FL+K 
Sbjct:  112 DKPRGFARGLDPERIIGATDSSGELMFLMKW 142
[Close]
BLAST of EMLSAG00000009617 vs. GO
Match: - (symbol:Q6E6J8 "Heterochromatin protein 1 gamma" species:10029 "Cricetulus griseus" [GO:0000779 "condensed chromosome, centromeric region" evidence=ISS] [GO:0000785 "chromatin" evidence=ISS] [GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS] [GO:0005720 "nuclear heterochromatin" evidence=ISS] [GO:0005819 "spindle" evidence=ISS] [GO:0019904 "protein domain specific binding" evidence=ISS] [GO:0031618 "nuclear centromeric heterochromatin" evidence=ISS] [GO:0045892 "negative regulation of transcription, DNA-templated" evidence=ISS] InterPro:IPR008251 Pfam:PF01393 SMART:SM00300 InterPro:IPR000953 GO:GO:0019904 GO:GO:0045892 GO:GO:0005635 GO:GO:0005819 GO:GO:0005719 InterPro:IPR016197 SMART:SM00298 SUPFAM:SSF54160 GO:GO:0000779 GO:GO:0031618 HOVERGEN:HBG000400 InterPro:IPR017984 InterPro:IPR023780 InterPro:IPR023779 Pfam:PF00385 PRINTS:PR00504 PROSITE:PS00598 PROSITE:PS50013 KO:K11586 EMBL:AY548738 RefSeq:NP_001233631.1 ProteinModelPortal:Q6E6J8 SMR:Q6E6J8 PRIDE:Q6E6J8 GeneID:100689443 KEGG:cge:100689443 Uniprot:Q6E6J8)

HSP 1 Score: 41.5874 bits (96), Expect = 1.392e-4
Identity = 19/31 (61.29%), Postives = 22/31 (70.97%), Query Frame = 0 
Query:   48 DRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            D+P    R LD E IIG TDSSGEL+FL+K 
Sbjct:  112 DKPRGFARGLDPERIIGATDSSGELMFLMKW 142
[Close]
BLAST of EMLSAG00000009617 vs. GO
Match: - (symbol:CBX3 "Chromobox protein homolog 3" species:9601 "Pongo abelii" [GO:0000779 "condensed chromosome, centromeric region" evidence=ISS] [GO:0000785 "chromatin" evidence=ISS] [GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS] [GO:0005720 "nuclear heterochromatin" evidence=ISS] [GO:0005819 "spindle" evidence=ISS] [GO:0019904 "protein domain specific binding" evidence=ISS] [GO:0031618 "nuclear centromeric heterochromatin" evidence=ISS] [GO:0045892 "negative regulation of transcription, DNA-templated" evidence=ISS] InterPro:IPR008251 Pfam:PF01393 SMART:SM00300 InterPro:IPR000953 GO:GO:0019904 GO:GO:0045892 GO:GO:0005635 GO:GO:0005819 GO:GO:0006351 GO:GO:0016568 GO:GO:0005719 InterPro:IPR016197 SMART:SM00298 SUPFAM:SSF54160 GO:GO:0000779 GO:GO:0031618 HOVERGEN:HBG000400 OrthoDB:EOG7QRQWW TreeFam:TF350503 InterPro:IPR017984 InterPro:IPR023780 InterPro:IPR023779 Pfam:PF00385 PRINTS:PR00504 PROSITE:PS00598 PROSITE:PS50013 GeneTree:ENSGT00510000046310 CTD:11335 KO:K11586 OMA:RESADKP EMBL:CR860350 RefSeq:NP_001126464.1 ProteinModelPortal:Q5R6X7 SMR:Q5R6X7 PRIDE:Q5R6X7 Ensembl:ENSPPYT00000020641 GeneID:100173451 KEGG:pon:100173451 InParanoid:Q5R6X7 Uniprot:Q5R6X7)

HSP 1 Score: 41.5874 bits (96), Expect = 1.392e-4
Identity = 19/31 (61.29%), Postives = 22/31 (70.97%), Query Frame = 0 
Query:   48 DRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            D+P    R LD E IIG TDSSGEL+FL+K 
Sbjct:  112 DKPRGFARGLDPERIIGATDSSGELMFLMKW 142
[Close]
BLAST of EMLSAG00000009617 vs. C. finmarchicus
Match: gi|592944497|gb|GAXK01014056.1| (TSA: Calanus finmarchicus comp8650_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 42.3578 bits (98), Expect = 4.196e-5
Identity = 19/26 (73.08%), Postives = 21/26 (80.77%), Query Frame = 0 
Query:   53 LDRNLDHECIIGDTDSSGELIFLIKH 78
             +RNLD E IIG TDSSGEL+FLIK 
Sbjct:  348 FERNLDPERIIGATDSSGELMFLIKW 425
[Close]
BLAST of EMLSAG00000009617 vs. C. finmarchicus
Match: gi|592893033|gb|GAXK01065342.1| (TSA: Calanus finmarchicus comp5804_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.059e-2
Identity = 18/25 (72.00%), Postives = 19/25 (76.00%), Query Frame = 0 
Query:   53 LDRNLDHECIIGDTDSSGELIFLIK 77
             DR L  E IIG TDSSGEL+FLIK
Sbjct:  371 FDRGLQAERIIGATDSSGELMFLIK 445
[Close]
BLAST of EMLSAG00000009617 vs. C. finmarchicus
Match: gi|592893032|gb|GAXK01065343.1| (TSA: Calanus finmarchicus comp5804_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 1.177e-2
Identity = 18/25 (72.00%), Postives = 19/25 (76.00%), Query Frame = 0 
Query:   53 LDRNLDHECIIGDTDSSGELIFLIK 77
             DR L  E IIG TDSSGEL+FLIK
Sbjct:  358 FDRGLQAERIIGATDSSGELMFLIK 432
[Close]
BLAST of EMLSAG00000009617 vs. C. finmarchicus
Match: gi|592767150|gb|GAXK01187418.1| (TSA: Calanus finmarchicus comp11141_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 2.025e-2
Identity = 17/25 (68.00%), Postives = 20/25 (80.00%), Query Frame = 0 
Query:   53 LDRNLDHECIIGDTDSSGELIFLIK 77
             +R LD E I+G TDSSGEL+FLIK
Sbjct:  365 FERRLDPERIVGATDSSGELMFLIK 439
[Close]
BLAST of EMLSAG00000009617 vs. C. finmarchicus
Match: gi|592778481|gb|GAXK01176087.1| (TSA: Calanus finmarchicus comp3967_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 1.900e-1
Identity = 14/25 (56.00%), Postives = 16/25 (64.00%), Query Frame = 0 
Query:   55 RNLDHECIIGDTDSSGELIFLIKHE 79
            R L  E IIG T+  GEL FLIK +
Sbjct:  220 RGLAPEKIIGATNEPGELFFLIKWK 294
[Close]
BLAST of EMLSAG00000009617 vs. C. finmarchicus
Match: gi|592891503|gb|GAXK01066872.1| (TSA: Calanus finmarchicus comp4572_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 1.002e+0
Identity = 14/23 (60.87%), Postives = 15/23 (65.22%), Query Frame = 0 
Query:   55 RNLDHECIIGDTDSSGELIFLIK 77
            R L  E IIG T+  GEL FLIK
Sbjct:  292 RGLTAEKIIGATNDPGELYFLIK 360
[Close]
BLAST of EMLSAG00000009617 vs. L. salmonis peptides
Match: EMLSAP00000009617 (pep:novel supercontig:LSalAtl2s:LSalAtl2s618:412741:412986:-1 gene:EMLSAG00000009617 transcript:EMLSAT00000009617 description:"augustus_masked-LSalAtl2s618-processed-gene-3.0")

HSP 1 Score: 163.696 bits (413), Expect = 1.182e-53
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 
Query:    1 MKKEGKKTNNSGYNLTASSTTSSRNQEEKRKNISSSNKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKHERL 81
            MKKEGKKTNNSGYNLTASSTTSSRNQEEKRKNISSSNKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKHERL
Sbjct:    1 MKKEGKKTNNSGYNLTASSTTSSRNQEEKRKNISSSNKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKHERL 81
[Close]
BLAST of EMLSAG00000009617 vs. L. salmonis peptides
Match: EMLSAP00000002376 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1452:27623:28132:1 gene:EMLSAG00000002376 transcript:EMLSAT00000002376 description:"augustus_masked-LSalAtl2s1452-processed-gene-0.8")

HSP 1 Score: 43.8986 bits (102), Expect = 3.442e-7
Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 0 
Query:   34 SSSNKKRKCRKP------DDDRPSVLDRNLDHECIIGDTDSSGELIFLIK 77
            +S+   ++ +KP      +D RP   DR L  E IIG TD+SGEL+FLIK
Sbjct:   78 ASTASGKEAKKPNAVHPEEDSRPRGFDRGLQAERIIGATDTSGELMFLIK 127
[Close]
BLAST of EMLSAG00000009617 vs. Select Arthropod Genomes
Match: gb|EEC00209.1| (conserved hypothetical protein [Ixodes scapularis])

HSP 1 Score: 46.595 bits (109), Expect = 6.240e-7
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 0 
Query:   28 EKRKNISSSNKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            +K K+ + +  ++K R+  D +P   DR LD + IIG TDSSGEL+FLIK 
Sbjct:   88 QKMKDDAEAPSRKKKRQDADSKPRGFDRGLDPDRIIGATDSSGELMFLIKW 138
[Close]
BLAST of EMLSAG00000009617 vs. nr
Match: gi|225714588|gb|ACO13140.1| (Chromobox protein homolog 1 [Lepeophtheirus salmonis])

HSP 1 Score: 81.2629 bits (199), Expect = 2.445e-17
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 0 
Query:   19 STTSSRNQEEKRKNISSSNKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            ST+SS NQ EKRK+ SSSN+K K RK DDDRP   DRNLD E IIG TDSSGEL+FLIK 
Sbjct:   99 STSSSTNQAEKRKSTSSSNEKSKSRKADDDRPRGFDRNLDPERIIGATDSSGELMFLIKW 158
[Close]
BLAST of EMLSAG00000009617 vs. nr
Match: gi|225714180|gb|ACO12936.1| (Chromobox protein homolog 1 [Lepeophtheirus salmonis])

HSP 1 Score: 81.2629 bits (199), Expect = 2.729e-17
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 0 
Query:   19 STTSSRNQEEKRKNISSSNKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            ST+SS NQ EKRK+ SSSN+K K RK DDDRP   DRNLD E IIG TDSSGEL+FLIK 
Sbjct:   97 STSSSTNQAEKRKSTSSSNEKSKSRKADDDRPRGFDRNLDPEHIIGATDSSGELMFLIKW 156
[Close]
BLAST of EMLSAG00000009617 vs. nr
Match: gi|225712178|gb|ACO11935.1| (Chromobox protein homolog 1 [Lepeophtheirus salmonis])

HSP 1 Score: 80.8777 bits (198), Expect = 3.300e-17
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 0 
Query:   19 STTSSRNQEEKRKNISSSNKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            ST+SS NQ EKRK+ SSSN+K K RK DDDRP   DRNLD E IIG TDSSGEL+FLIK 
Sbjct:   99 STSSSTNQAEKRKSTSSSNEKSKSRKADDDRPRGFDRNLDPERIIGATDSSGELMFLIKW 158
[Close]
BLAST of EMLSAG00000009617 vs. nr
Match: gi|225712476|gb|ACO12084.1| (Chromobox protein homolog 1 [Lepeophtheirus salmonis])

HSP 1 Score: 80.8777 bits (198), Expect = 3.366e-17
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 0 
Query:   19 STTSSRNQEEKRKNISSSNKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            ST+SS NQ EKRK+ SSSN+K K RK DDDRP   DRNLD E IIG TDSSGEL+FLIK 
Sbjct:  100 STSSSTNQAEKRKSTSSSNEKSKSRKADDDRPRGFDRNLDPERIIGATDSSGELMFLIKW 159
[Close]
BLAST of EMLSAG00000009617 vs. nr
Match: gi|290462957|gb|ADD24526.1| (Chromobox protein homolog 1 [Lepeophtheirus salmonis])

HSP 1 Score: 78.9518 bits (193), Expect = 2.165e-16
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 0 
Query:   19 STTSSRNQEEKRKNISSSNKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            ST+SS NQ EKRK+ SSSN+K K RK DDDRP   DRNLD E I G TDSSGEL+FLIK 
Sbjct:  100 STSSSTNQAEKRKSTSSSNEKSKSRKADDDRPRGFDRNLDPERITGATDSSGELMFLIKW 159
[Close]
BLAST of EMLSAG00000009617 vs. nr
Match: gi|225713868|gb|ACO12780.1| (Chromobox protein homolog 1 [Lepeophtheirus salmonis])

HSP 1 Score: 73.1738 bits (178), Expect = 2.746e-14
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 0 
Query:   26 QEEKRKNISSSNKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            Q EKRK+ SSSN+K K RK DDDRP   DRNLD E IIG TDSSGEL+FLIK 
Sbjct:  107 QAEKRKSTSSSNEKSKSRKADDDRPRGFDRNLDPERIIGATDSSGELMFLIKW 159
[Close]
BLAST of EMLSAG00000009617 vs. nr
Match: gi|290561843|gb|ADD38319.1| (Chromobox protein homolog 1 [Lepeophtheirus salmonis])

HSP 1 Score: 73.1738 bits (178), Expect = 3.779e-14
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 0 
Query:   26 QEEKRKNISSSNKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            Q EKRK+ SSSN+K K RK DDDRP   DRNLD E IIG TDSSGEL+FLIK 
Sbjct:  107 QAEKRKSTSSSNEKNKSRKADDDRPRGFDRNLDPERIIGATDSSGELMFLIKW 159
[Close]
BLAST of EMLSAG00000009617 vs. nr
Match: gi|290561793|gb|ADD38294.1| (Chromobox protein homolog 1 [Lepeophtheirus salmonis])

HSP 1 Score: 72.7886 bits (177), Expect = 4.203e-14
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 0 
Query:   26 QEEKRKNISSSNKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            Q EKRK+ SSSN+K K RK DDDRP   DRNLD E IIG TDSSGEL+FLIK 
Sbjct:  107 QAEKRKSTSSSNEKSKSRKADDDRPRGFDRNLDPERIIGATDSSGELMFLIKW 159
[Close]
BLAST of EMLSAG00000009617 vs. nr
Match: gi|290462581|gb|ADD24338.1| (Chromobox protein homolog 1 [Lepeophtheirus salmonis])

HSP 1 Score: 72.7886 bits (177), Expect = 4.278e-14
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 0 
Query:   26 QEEKRKNISSSNKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            Q EKRK+ SSSN+K K RK DDDRP   DRNLD E IIG TDSSGEL+FLIK 
Sbjct:  108 QAEKRKSTSSSNEKSKSRKADDDRPRGFDRNLDPERIIGATDSSGELMFLIKW 160
[Close]
BLAST of EMLSAG00000009617 vs. nr
Match: gi|225713332|gb|ACO12512.1| (Chromobox protein homolog 1 [Lepeophtheirus salmonis])

HSP 1 Score: 72.7886 bits (177), Expect = 4.278e-14
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 0 
Query:   26 QEEKRKNISSSNKKRKCRKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            Q EKRK+ SSSN+K K RK DDDRP   DRNLD E IIG TDSSGEL+FLIK 
Sbjct:  108 QAEKRKSTSSSNEKSKSRKADDDRPRGFDRNLDPERIIGATDSSGELMFLIKW 160
[Close]
BLAST of EMLSAG00000009617 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold286_size222086-processed-gene-0.3 (protein:Tk07251 transcript:snap_masked-scaffold286_size222086-processed-gene-0.3-mRNA-1 annotation:"chromobox protein homolog 1")

HSP 1 Score: 50.0618 bits (118), Expect = 1.959e-9
Identity = 25/36 (69.44%), Postives = 27/36 (75.00%), Query Frame = 0 
Query:   43 RKPDDDRPSVLDRNLDHECIIGDTDSSGELIFLIKH 78
            +K DDDRP   DR LD E IIG TDSSGEL+FLIK 
Sbjct:   97 KKGDDDRPRGFDRGLDPERIIGATDSSGELMFLIKW 132
The following BLAST results are available for this feature:
BLAST of EMLSAG00000009617 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 16
Match NameE-valueIdentityDescription
-2.113e-549.06symbol:Cbx3 "Protein LOC688980" species:10116 "Rat... [more]
-2.113e-549.06symbol:LOC688980 "hypothetical protein LOC688980" ... [more]
-2.113e-549.06symbol:Cbx3 "chromobox homolog 3" species:10116 "R... [more]
-2.646e-557.89symbol:cbx1a "chromobox homolog 1a (HP1 beta homol... [more]
-3.584e-548.00symbol:F1P6N7 "Uncharacterized protein" species:96... [more]
-5.271e-555.00symbol:cbx3a "chromobox homolog 3a (HP1 gamma homo... [more]
-1.310e-461.29symbol:CBX3 "Uncharacterized protein" species:9823... [more]
-1.392e-461.29symbol:Cbx3 "Chromobox homolog 3 (HP1 gamma homolo... [more]
-1.392e-461.29symbol:Q6E6J8 "Heterochromatin protein 1 gamma" sp... [more]
-1.392e-461.29symbol:CBX3 "Chromobox protein homolog 3" species:... [more]

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BLAST of EMLSAG00000009617 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592944497|gb|GAXK01014056.1|4.196e-573.08TSA: Calanus finmarchicus comp8650_c0_seq1 transcr... [more]
gi|592893033|gb|GAXK01065342.1|1.059e-272.00TSA: Calanus finmarchicus comp5804_c0_seq1 transcr... [more]
gi|592893032|gb|GAXK01065343.1|1.177e-272.00TSA: Calanus finmarchicus comp5804_c0_seq2 transcr... [more]
gi|592767150|gb|GAXK01187418.1|2.025e-268.00TSA: Calanus finmarchicus comp11141_c1_seq1 transc... [more]
gi|592778481|gb|GAXK01176087.1|1.900e-156.00TSA: Calanus finmarchicus comp3967_c0_seq1 transcr... [more]
gi|592891503|gb|GAXK01066872.1|1.002e+060.87TSA: Calanus finmarchicus comp4572_c0_seq1 transcr... [more]
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BLAST of EMLSAG00000009617 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000096171.182e-53100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s618:41274... [more]
EMLSAP000000023763.442e-746.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1452:2762... [more]
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BLAST of EMLSAG00000009617 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009617 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 1
Match NameE-valueIdentityDescription
gb|EEC00209.1|6.240e-747.06conserved hypothetical protein [Ixodes scapularis][more]
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BLAST of EMLSAG00000009617 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 14
Match NameE-valueIdentityDescription
gi|225714588|gb|ACO13140.1|2.445e-1771.67Chromobox protein homolog 1 [Lepeophtheirus salmon... [more]
gi|225714180|gb|ACO12936.1|2.729e-1771.67Chromobox protein homolog 1 [Lepeophtheirus salmon... [more]
gi|225712178|gb|ACO11935.1|3.300e-1771.67Chromobox protein homolog 1 [Lepeophtheirus salmon... [more]
gi|225712476|gb|ACO12084.1|3.366e-1771.67Chromobox protein homolog 1 [Lepeophtheirus salmon... [more]
gi|290462957|gb|ADD24526.1|2.165e-1670.00Chromobox protein homolog 1 [Lepeophtheirus salmon... [more]
gi|225713868|gb|ACO12780.1|2.746e-1471.70Chromobox protein homolog 1 [Lepeophtheirus salmon... [more]
gi|290561843|gb|ADD38319.1|3.779e-1471.70Chromobox protein homolog 1 [Lepeophtheirus salmon... [more]
gi|290561793|gb|ADD38294.1|4.203e-1471.70Chromobox protein homolog 1 [Lepeophtheirus salmon... [more]
gi|290462581|gb|ADD24338.1|4.278e-1471.70Chromobox protein homolog 1 [Lepeophtheirus salmon... [more]
gi|225713332|gb|ACO12512.1|4.278e-1471.70Chromobox protein homolog 1 [Lepeophtheirus salmon... [more]

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BLAST of EMLSAG00000009617 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
snap_masked-scaffold286_size222086-processed-gene-0.31.959e-969.44protein:Tk07251 transcript:snap_masked-scaffold286... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s618supercontigLSalAtl2s618:412741..412986 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s618-processed-gene-3.0
Biotypeprotein_coding
EvidenceIEA
NoteChromobox protein homolog 1 [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000009617 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000009617EMLSAT00000009617-705464Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s618:412741..412986-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000009617-692383 ID=EMLSAG00000009617-692383|Name=EMLSAG00000009617|organism=Lepeophtheirus salmonis|type=gene|length=246bp|location=Sequence derived from alignment at LSalAtl2s618:412741..412986- (Lepeophtheirus salmonis)
ATGAAAAAGGAAGGTAAAAAGACCAATAACAGTGGTTATAACCTCACGGC
CTCTTCGACAACTTCCAGTAGGAACCAAGAGGAGAAGCGGAAAAATATAA
GCTCTTCCAACAAAAAAAGAAAATGCAGAAAACCGGATGATGATCGTCCA
AGTGTATTAGACCGAAATCTGGACCACGAATGCATAATTGGAGATACGGA
TTCCTCAGGAGAACTTATCTTTCTCATCAAACACGAAAGGCTTTGA
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