EMLSAG00000009989, EMLSAG00000009989-692755 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000009989
Unique NameEMLSAG00000009989-692755
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000009989 vs. C. finmarchicus
Match: gi|592892294|gb|GAXK01066081.1| (TSA: Calanus finmarchicus comp4960_c16_seq29 transcribed RNA sequence)

HSP 1 Score: 43.5134 bits (101), Expect = 8.439e-5
Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = 0 
Query:   26 VAIPEKCVFLTNTINTNG----GEYSYIDPLGSLVTISYEIGANGQYTETRKVV 75
            V   +K  ++++    NG    G Y+Y+DP GSLVT++Y+ G  G YTETR+V 
Sbjct:   86 VGDDDKQTYISHKEARNGENVEGSYNYVDPTGSLVTVNYQAGPMG-YTETREVT 244
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BLAST of EMLSAG00000009989 vs. C. finmarchicus
Match: gi|592892316|gb|GAXK01066059.1| (TSA: Calanus finmarchicus comp4960_c16_seq7 transcribed RNA sequence)

HSP 1 Score: 45.4394 bits (106), Expect = 9.658e-5
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 0 
Query:   30 EKCVFLTNTINTNG----GEYSYIDPLGSLVTISYEIGANGQYTETRKV 74
            +K  ++++    NG    G Y+Y+DP GSLVT++Y+ G  G YTETR+V
Sbjct:  391 DKQTYISHKEARNGENVEGSYNYVDPTGSLVTVNYQAGPMG-YTETREV 534
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BLAST of EMLSAG00000009989 vs. C. finmarchicus
Match: gi|592892268|gb|GAXK01066107.1| (TSA: Calanus finmarchicus comp4960_c17_seq26 transcribed RNA sequence)

HSP 1 Score: 43.5134 bits (101), Expect = 1.012e-4
Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = 0 
Query:   26 VAIPEKCVFLTNTINTNG----GEYSYIDPLGSLVTISYEIGANGQYTETRKVV 75
            V   +K  ++++    NG    G Y+Y+DP GSLVT++Y+ G  G YTETR+V 
Sbjct:   97 VGDDDKQTYISHKEARNGENVEGSYNYVDPTGSLVTVNYQAGPMG-YTETREVT 255
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BLAST of EMLSAG00000009989 vs. C. finmarchicus
Match: gi|592892303|gb|GAXK01066072.1| (TSA: Calanus finmarchicus comp4960_c16_seq20 transcribed RNA sequence)

HSP 1 Score: 43.1282 bits (100), Expect = 1.212e-4
Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = 0 
Query:   26 VAIPEKCVFLTNTINTNG----GEYSYIDPLGSLVTISYEIGANGQYTETRKVV 75
            V   +K  ++++    NG    G Y+Y+DP GSLVT++Y+ G  G YTETR+V 
Sbjct:  135 VGDDDKQTYISHKEARNGENVEGSYNYVDPTGSLVTVNYQAGPMG-YTETREVT 293
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BLAST of EMLSAG00000009989 vs. C. finmarchicus
Match: gi|592892320|gb|GAXK01066055.1| (TSA: Calanus finmarchicus comp4960_c16_seq3 transcribed RNA sequence)

HSP 1 Score: 45.0542 bits (105), Expect = 1.767e-4
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 0 
Query:   26 VAIPEKCVFLTNTINTNG----GEYSYIDPLGSLVTISYEIGANGQYTETRKV 74
            V   +K  ++++    NG    G Y+Y+DP GSLVT++Y+ G  G YTETR+V
Sbjct:  577 VGDDDKQTYISHKEARNGENVEGSYNYVDPTGSLVTVNYQAGPMG-YTETREV 732
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BLAST of EMLSAG00000009989 vs. C. finmarchicus
Match: gi|592776167|gb|GAXK01178401.1| (TSA: Calanus finmarchicus comp15136_c2_seq8 transcribed RNA sequence)

HSP 1 Score: 44.2838 bits (103), Expect = 2.807e-4
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 0 
Query:   44 GEYSYIDPLGSLVTISYEIGANGQYTETRKVVNDY 78
            G YSY+DPLGSL+T++Y  G  G Y ETR V  ++
Sbjct:  249 GSYSYVDPLGSLITVTYTAGPMG-YQETRNVQENF 350
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BLAST of EMLSAG00000009989 vs. C. finmarchicus
Match: gi|592776165|gb|GAXK01178403.1| (TSA: Calanus finmarchicus comp15136_c2_seq10 transcribed RNA sequence)

HSP 1 Score: 44.2838 bits (103), Expect = 2.839e-4
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 0 
Query:   44 GEYSYIDPLGSLVTISYEIGANGQYTETRKVVNDY 78
            G YSY+DPLGSL+T++Y  G  G Y ETR V  ++
Sbjct:  249 GSYSYVDPLGSLITVTYTAGPMG-YQETRNVQENF 350
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BLAST of EMLSAG00000009989 vs. C. finmarchicus
Match: gi|592776170|gb|GAXK01178398.1| (TSA: Calanus finmarchicus comp15136_c2_seq5 transcribed RNA sequence)

HSP 1 Score: 44.2838 bits (103), Expect = 2.864e-4
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 0 
Query:   44 GEYSYIDPLGSLVTISYEIGANGQYTETRKVVNDY 78
            G YSY+DPLGSL+T++Y  G  G Y ETR V  ++
Sbjct:  249 GSYSYVDPLGSLITVTYTAGPMG-YQETRNVQENF 350
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BLAST of EMLSAG00000009989 vs. C. finmarchicus
Match: gi|592776169|gb|GAXK01178399.1| (TSA: Calanus finmarchicus comp15136_c2_seq6 transcribed RNA sequence)

HSP 1 Score: 44.2838 bits (103), Expect = 2.898e-4
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 0 
Query:   44 GEYSYIDPLGSLVTISYEIGANGQYTETRKVVNDY 78
            G YSY+DPLGSL+T++Y  G  G Y ETR V  ++
Sbjct:  249 GSYSYVDPLGSLITVTYTAGPMG-YQETRNVQENF 350
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BLAST of EMLSAG00000009989 vs. C. finmarchicus
Match: gi|592776164|gb|GAXK01178404.1| (TSA: Calanus finmarchicus comp15136_c2_seq11 transcribed RNA sequence)

HSP 1 Score: 44.2838 bits (103), Expect = 3.083e-4
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 0 
Query:   44 GEYSYIDPLGSLVTISYEIGANGQYTETRKVVNDY 78
            G YSY+DPLGSL+T++Y  G  G Y ETR V  ++
Sbjct:  249 GSYSYVDPLGSLITVTYTAGPMG-YQETRNVQENF 350
[Close]
BLAST of EMLSAG00000009989 vs. L. salmonis peptides
Match: EMLSAP00000009989 (pep:novel supercontig:LSalAtl2s:LSalAtl2s653:74487:76320:-1 gene:EMLSAG00000009989 transcript:EMLSAT00000009989 description:"maker-LSalAtl2s653-snap-gene-0.37")

HSP 1 Score: 612.838 bits (1579), Expect = 0.000e+0
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0 
Query:    1 MKSVQLFVALVSVALTGSVFGRSQPVAIPEKCVFLTNTINTNGGEYSYIDPLGSLVTISYEIGANGQYTETRKVVNDYASGHGGSGSASTDVNVVINQVIQEIEVQITTTIEQVLISTNVNAPNFRPNNLVEIILKKLRPIITTTVRRIISSSGLNLNINEVVENVIAQIXPSILQGVESAIKGNSDFNNGKNKPGKKPTGSLSGQGENSALLIDQIIAQLRPFIVQTVNQQTKIQCQNHGGSSSGFVSSTGSSFGSSRPSRPSTGSSRPSSGSARPSSSGSASSSGFESRQAVLLLALVVHQVCPQEISTS 312
            MKSVQLFVALVSVALTGSVFGRSQPVAIPEKCVFLTNTINTNGGEYSYIDPLGSLVTISYEIGANGQYTETRKVVNDYASGHGGSGSASTDVNVVINQVIQEIEVQITTTIEQVLISTNVNAPNFRPNNLVEIILKKLRPIITTTVRRIISSSGLNLNINEVVENVIAQIXPSILQGVESAIKGNSDFNNGKNKPGKKPTGSLSGQGENSALLIDQIIAQLRPFIVQTVNQQTKIQCQNHGGSSSGFVSSTGSSFGSSRPSRPSTGSSRPSSGSARPSSSGSASSSGFESRQAVLLLALVVHQVCPQEISTS
Sbjct:    1 MKSVQLFVALVSVALTGSVFGRSQPVAIPEKCVFLTNTINTNGGEYSYIDPLGSLVTISYEIGANGQYTETRKVVNDYASGHGGSGSASTDVNVVINQVIQEIEVQITTTIEQVLISTNVNAPNFRPNNLVEIILKKLRPIITTTVRRIISSSGLNLNINEVVENVIAQIXPSILQGVESAIKGNSDFNNGKNKPGKKPTGSLSGQGENSALLIDQIIAQLRPFIVQTVNQQTKIQCQNHGGSSSGFVSSTGSSFGSSRPSRPSTGSSRPSSGSARPSSSGSASSSGFESRQAVLLLALVVHQVCPQEISTS 312
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BLAST of EMLSAG00000009989 vs. L. salmonis peptides
Match: EMLSAP00000004347 (pep:novel supercontig:LSalAtl2s:LSalAtl2s229:12106:16104:-1 gene:EMLSAG00000004347 transcript:EMLSAT00000004347 description:"maker-LSalAtl2s229-snap-gene-0.4")

HSP 1 Score: 348.977 bits (894), Expect = 2.126e-114
Identity = 171/239 (71.55%), Postives = 207/239 (86.61%), Query Frame = 0 
Query:    4 VQLFVAL-VSVALTGSVFGRSQPV-AIPEKCVFLTNTINTNGGEYSYIDPLGSLVTISYEIGANGQYTETRKVVNDYASGHGGSGSASTDVNVVINQVIQEIEVQITTTIEQVLISTNVNAPNFRPNNLVEIILKKLRPIITTTVRRIISSSGLNLNINEVVENVIAQIXPSILQGVESAIKGNSDFNNGKNKPGKKPTGSLSGQGENSALLIDQIIAQLRPFIVQTVNQQTKIQCQNH 240
            +++F+ L + + L+GS FGRS+P+  IP+ CVF+TN     GGEYSYIDPLGSLVTI YEIG NG+YTE+R+VV DYASGH G+    +D+NV+++QVIQEIE++ T TIE VL  TNVNAPNF P+NLV+ I+KKLRPIITTTVRRIISSSGLNLN+NEVV+NVI QI P+ILQGVESAI+GN+ FN+GKNKPGKKPTG+LSGQGENSA+LIDQIIAQLRPFIV+ V++QTKIQCQNH
Sbjct:   11 MKVFIVLSLILTLSGSSFGRSEPIPTIPKGCVFITNVQTARGGEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDYASGHAGA----SDINVIVSQVIQEIEIETTKTIELVLRKTNVNAPNFLPSNLVQTIVKKLRPIITTTVRRIISSSGLNLNVNEVVDNVILQIEPAILQGVESAIQGNTSFNSGKNKPGKKPTGNLSGQGENSAILIDQIIAQLRPFIVEIVSKQTKIQCQNH 245
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BLAST of EMLSAG00000009989 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold776_size99073-snap-gene-0.22 (protein:Tk00567 transcript:maker-scaffold776_size99073-snap-gene-0.22-mRNA-1 annotation:"hypothetical protein")

HSP 1 Score: 74.3294 bits (181), Expect = 7.431e-15
Identity = 61/222 (27.48%), Postives = 104/222 (46.85%), Query Frame = 0 
Query:   30 EKCVFLTNTINTNGG----EYSYIDPLGSLVTISYEIGANGQYTETRKV---------VNDYASGHGGSGSASTDVNVVINQVIQEIEVQITTTIEQVLISTNVNAPNFRPNNLVEIILKKLRPIITTTVRRIISSSGL-NLNINEVVENVIAQIXPSILQGVESA------IKGNSDFNNGKNKPGKKPTGSLSGQGENSALLIDQIIAQLRPFIVQTVNQ 231
            E C+ L    N   G    EYSY+DP+GS +T+SY  G +G Y+E R+V         V      H  SG++    + V+ +VI ++E     TIE+++ +    + +     + + I  +L+P I   VR  ++   + +L   ++   VI+QI P+I + +E        I   +  NN  N+              N A LI QI+ +L+P I +T+ +
Sbjct:   59 ENCICLDQVKNEKDGQTQGEYSYVDPVGSKITVSYTYGVDGAYSERRRVDKNTGGMTTVIQQVKSHQSSGTSQAQRDNVVQEVITQLE----ATIERLVKTVVTESGSSSTAEVFQRIQTQLKPTILRLVRTTLTKYEVSDLEAADITTTVISQIEPTIREQIERVTTTTQTITTTTTTNNQANR--------------NQADLIAQILFKLKPIIQKTIEE 262
The following BLAST results are available for this feature:
BLAST of EMLSAG00000009989 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009989 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592892294|gb|GAXK01066081.1|8.439e-542.59TSA: Calanus finmarchicus comp4960_c16_seq29 trans... [more]
gi|592892316|gb|GAXK01066059.1|9.658e-544.90TSA: Calanus finmarchicus comp4960_c16_seq7 transc... [more]
gi|592892268|gb|GAXK01066107.1|1.012e-442.59TSA: Calanus finmarchicus comp4960_c17_seq26 trans... [more]
gi|592892303|gb|GAXK01066072.1|1.212e-442.59TSA: Calanus finmarchicus comp4960_c16_seq20 trans... [more]
gi|592892320|gb|GAXK01066055.1|1.767e-443.40TSA: Calanus finmarchicus comp4960_c16_seq3 transc... [more]
gi|592776167|gb|GAXK01178401.1|2.807e-454.29TSA: Calanus finmarchicus comp15136_c2_seq8 transc... [more]
gi|592776165|gb|GAXK01178403.1|2.839e-454.29TSA: Calanus finmarchicus comp15136_c2_seq10 trans... [more]
gi|592776170|gb|GAXK01178398.1|2.864e-454.29TSA: Calanus finmarchicus comp15136_c2_seq5 transc... [more]
gi|592776169|gb|GAXK01178399.1|2.898e-454.29TSA: Calanus finmarchicus comp15136_c2_seq6 transc... [more]
gi|592776164|gb|GAXK01178404.1|3.083e-454.29TSA: Calanus finmarchicus comp15136_c2_seq11 trans... [more]

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BLAST of EMLSAG00000009989 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000099890.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s653:74487... [more]
EMLSAP000000043472.126e-11471.55pep:novel supercontig:LSalAtl2s:LSalAtl2s229:12106... [more]
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BLAST of EMLSAG00000009989 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009989 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009989 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009989 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold776_size99073-snap-gene-0.227.431e-1527.48protein:Tk00567 transcript:maker-scaffold776_size9... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s653supercontigLSalAtl2s653:74487..76320 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s653-snap-gene-0.37
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000009989 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000009989EMLSAT00000009989-705836Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s653:74487..76320-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000009989-692755 ID=EMLSAG00000009989-692755|Name=EMLSAG00000009989|organism=Lepeophtheirus salmonis|type=gene|length=1834bp|location=Sequence derived from alignment at LSalAtl2s653:74487..76320- (Lepeophtheirus salmonis)
ATGAAGGTAAGAATATATCGAAAAAGATTCGACATTCCTTTCAACATAGT
ACTAATATATTATTCTCAATTTTCAGTCAGTCCAATTATTTGTTGCTCTA
GTGAGTGTTGCCTTAACCGGATCAGTATTCGGAAGGTCTCAGGTAAATCC
TTCGCTAATTTATAAGTCTAATTTGATTAACATCCCTTATATTATATTAT
TGCAGCCTGTTGCAATCCCAGAAAAGTGTGTTTTTTTAACAAATACCATA
AATACGAATGGAGGAGAATACTCTTACATTGACCCTTTAGGGTCCCTCGT
TACCATTTCTTATGAAATTGGAGCCAATGGACAATACACTGAAACACGTA
AAGTAGTAAATGACTATGCCTCTGGTCATGGAGGATCCGGTTCTGCCTCC
ACTGATGTAAACGTTGTTATTAATCAAGTTATTCAAGAAATTGAAGTTCA
AATTACAACCACCATTGAACAGGTCTTGATATCCACAAATGTCAATGCTC
CTAACTTCCGTCCAAATAATCTTGTTGAAATTATTCTTAAGAAGCTTAGA
CCCATCATTACCACAACTGTTCGTAGAATCATCTCCAGCTCTGGATTGAA
TTTGAATATCAATGAAGTTGTTGAAAATGTTATTGCCCAAATCCAMCCCT
CTATCCTCCAGGGTGTTGAGTCTGCCATTAAAGGAAATTCTGATTTCAAT
AATGGAAAGAACAAGCCAGGAAAGAAACCAACCGGCAGTTTGTCTGGACA
AGGAGAAAATTCTGCTTTATTAATTGATCAAATCATTGCTCAACTCAGAC
CATTCATCGTTCAAACAGTCAATCAACAAACCAAAATTCAATGCCAAAAT
CACGGAGGATCCTCAAGTGGTTTTGTTTCATCCACTGGAAGTTCTTTTGG
ATCCAGTCGACCCAGCAGACCTTCAACTGGCTCCAGCCGCCCATCCTCCG
GATCAGCTAGACCAAGTTCAAGTGGTTCTGCTTCATCTTCTGGATTTGAA
TCTCGTCCATCYTCCGGMTCAAACAGSCCCTYATCTRGCTCYARCCGTCC
ATCCTCWGGATCAAGCMGACCCTCATCTGGATCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAACTAGACCAAGCAGACCCTCATCTGGATCAACTAGACCAAGC
AGACCCTCATMTGGTTCCAACCGTCCATCATCTGGATCGAGCAGACCATC
ATCTGGATCCAGCCGTCCGTCTTCTGGATCAAGCAGACCTAATATACCAT
CTATTGGATCTACAAGGCCAAGCCGTCCTTCTTCTGGCTCTAGTCGTCCA
TCAAGTGTGCCCACAGGAAATATCAACAAGTTAA
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