EMLSAG00000010887, EMLSAG00000010887-693653 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000010887 vs. C. finmarchicus
Match: gi|592753069|gb|GAXK01201344.1| (TSA: Calanus finmarchicus comp144347_c1_seq1 transcribed RNA sequence) HSP 1 Score: 90.8929 bits (224), Expect = 8.948e-18 Identity = 115/417 (27.58%), Postives = 192/417 (46.04%), Query Frame = 0 Query: 76 SGNNYWAKLSVVIGGXXXXXXXXXXXXXXXXMQVFKCREPRLDPPHNKTAATGVALVFILIVTRFPYEIHQMVGLF--NQGRTGDRMDPQWSSMQSNTNFEKEMIFNALIYIAPAIHPF------GQQDNGNKERMKEMKSIPPQRNRAPQDMRSKEE----PLVDRRXPVIIPAVSGSSGYYNARXXXXXXXXXXXXXXXXXXXXXXXXLK---SHYDGNLSFEERQT------MRAIADQNHFPLDNSFENHSIMTTSPNSN-------LPPVFEFEGLKYIDTARVEPRIAYSXXXXXXXXXXXXRYDQKPFADPVERFIQNNAWAH------YPMEMVDFSIP--------PTLPESPMLIRSQSRVNDLD-------ETLEVLEESPGSKKRNRNFNSSKEEFILSNGRPKK 443 SG+ ++ L+ +I F++P + ++FP LAL MQ+ R PRLDPPH++TA V + + I +R P++I++++ +F G GD ++ +M + E +M N L+YI IHP G+ G ++ + + +N++ +D++ +++ P + R+ P GS GY + + Q K + G + + M+ ++ Q LD+S S T SPN P VFE+ KYID+ARVEP+IAY+P TPPKTP P +D KPF P ++ + W++ Y M IP P LP S + V+D++ +E LE SPGS R+ + + + ++ P++ Sbjct: 1220 SGSEFYINLAFLIVAFILPWLIMMFPLLALFMQICGARSPRLDPPHSRTAMIMVLFILLFIASRAPHDIYELMKMFAMKNGIRGDTLNRGMPAM----SMETKMTLNCLVYIPCMIHPILFILINGEYRQGFRDMWRNLYC---NKNQSQRDIQKQQKYKNPPPIVRQNP-----RGGSRGYRKPGRDALVAEVQPMIMPAQQPMVNQMTQKMGNPYIGGGQQYIQGNARTPYIPMQPLSPQQEPLLDHSM---SFETESPNGGDRDPTHQFPAVFEYGKFKYIDSARVEPKIAYTPTNTPPKTPQIPHFDVKPFKQP--NYV-DGTWSYPGDQEAYTGLMPASQIPIGGFPLTDPNLPSSAQPV----EVDDIEFEKGPAPMEIESLENSPGSTLRSSRRGQPEVKQLTASPGPRR 2404
BLAST of EMLSAG00000010887 vs. C. finmarchicus
Match: gi|592816468|gb|GAXK01138100.1| (TSA: Calanus finmarchicus comp103359_c3_seq2 transcribed RNA sequence) HSP 1 Score: 43.5134 bits (101), Expect = 1.878e-3 Identity = 23/75 (30.67%), Postives = 36/75 (48.00%), Query Frame = 0 Query: 699 KICAFNTDSNPCTMNEGGPLTVRLYDRYVTMGIRIQHPACKLKNKTVPLGEPGLYARLHTAVLRQLVPMLKDGEC 773 +IC F ++ C + GGPLTV +YV +G+ C + PG+YAR+ + + + DGEC Sbjct: 214 RICGFAKGTDTCQGDSGGPLTVVEGGKYVLVGVVSYGAGCASRF-------PGVYARVQN-YMGWIKELTADGEC 414
BLAST of EMLSAG00000010887 vs. C. finmarchicus
Match: gi|592816469|gb|GAXK01138099.1| (TSA: Calanus finmarchicus comp103359_c3_seq1 transcribed RNA sequence) HSP 1 Score: 43.1282 bits (100), Expect = 2.979e-3 Identity = 23/75 (30.67%), Postives = 36/75 (48.00%), Query Frame = 0 Query: 699 KICAFNTDSNPCTMNEGGPLTVRLYDRYVTMGIRIQHPACKLKNKTVPLGEPGLYARLHTAVLRQLVPMLKDGEC 773 +IC F ++ C + GGPLTV +YV +G+ C + PG+YAR+ + + + DGEC Sbjct: 214 RICGFAKGTDTCQGDSGGPLTVVEGGKYVLVGVVSYGAGCASRF-------PGVYARVQN-YMGWIKELTADGEC 414
BLAST of EMLSAG00000010887 vs. C. finmarchicus
Match: gi|592858514|gb|GAXK01099048.1| (TSA: Calanus finmarchicus comp238145_c2_seq1 transcribed RNA sequence) HSP 1 Score: 39.2762 bits (90), Expect = 6.631e-2 Identity = 23/92 (25.00%), Postives = 41/92 (44.57%), Query Frame = 0 Query: 669 FDDIEKDVVVKN----ENFRTDLKEDLLFPTDLHKICAFNTDSNPCTMNEGGPLTVRLYDRYVTMGIRIQHPACKLKNKTVPLGEPGLYARL 756 F DI ++ VV+ E ++ E+ ++ H ICA + + C + GGPL + R++ G+ C + G PG+Y + Sbjct: 1048 FSDILQEAVVQTMTDAECRNSNYNENFIYD---HHICAAASGVDSCAGDAGGPLMIEENGRWILAGVTSWGTGCARE------GYPGVYTEM 1296
BLAST of EMLSAG00000010887 vs. C. finmarchicus
Match: gi|592862158|gb|GAXK01095404.1| (TSA: Calanus finmarchicus comp1887993_c0_seq1 transcribed RNA sequence) HSP 1 Score: 38.1206 bits (87), Expect = 1.219e-1 Identity = 31/102 (30.39%), Postives = 46/102 (45.10%), Query Frame = 0 Query: 663 NLSDFEFDDIEKDVVVKNENFRT-DLKEDLL-FPTDLHKI--CAFNTDSNPCTMNEGGPLTVRLYDRYVTMGIRIQHPACKLKNKTVPLGEPGLYARLHTAV 760 L F D ++K V E + D+ D+ P + I CA +T + C + GGPL V + +GI C +K PL PG+YAR+ + V Sbjct: 376 GLGSFASDTLQKLSVRMVEQAQCQDIYRDVENVPVQIRNINMCAASTVGDTCQGDSGGPLMVWRNGYFEIVGIISFGIGCSSTHKGKPL--PGVYARVSSVV 675
BLAST of EMLSAG00000010887 vs. C. finmarchicus
Match: gi|592837892|gb|GAXK01119652.1| (TSA: Calanus finmarchicus comp333980_c1_seq1 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 5.893e-1 Identity = 20/68 (29.41%), Postives = 30/68 (44.12%), Query Frame = 0 Query: 689 EDLLFPTDLHKICAFNTDSNPCTMNEGGPLTVRLYDRYVTMGIRIQHPACKLKNKTVPLGEPGLYARL 756 +++LF KICAF ++ C + GGPL + + +GI C PG+Y RL Sbjct: 188 KEMLFGDSDTKICAFREGADSCQGDSGGPLFIEHDGVFTQLGIVSYGYGCATH-------LPGVYTRL 370
BLAST of EMLSAG00000010887 vs. C. finmarchicus
Match: gi|592931436|gb|GAXK01027117.1| (TSA: Calanus finmarchicus comp18562_c1_seq2 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 9.982e-1 Identity = 22/83 (26.51%), Postives = 36/83 (43.37%), Query Frame = 0 Query: 694 PTDLHKICAFNTDSNPCTMNEGGPLTVRLYDRYVTMGIRIQHPACKLKNKTVPLGEPGLYARLHTAVLRQLVPMLKDGECKHH 776 P K+C + ++ C + GGPL V+ R+ +G+ C + G G+YAR+ T L + + DG C Sbjct: 727 PVPNSKMCGYKAGTDSCQGDSGGPLVVKEDGRWTVVGVVSYGLGCARR------GYAGVYARV-TNYLDWINTNIADGWCTSE 954
BLAST of EMLSAG00000010887 vs. C. finmarchicus
Match: gi|592931437|gb|GAXK01027116.1| (TSA: Calanus finmarchicus comp18562_c1_seq1 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 1.002e+0 Identity = 22/83 (26.51%), Postives = 36/83 (43.37%), Query Frame = 0 Query: 694 PTDLHKICAFNTDSNPCTMNEGGPLTVRLYDRYVTMGIRIQHPACKLKNKTVPLGEPGLYARLHTAVLRQLVPMLKDGECKHH 776 P K+C + ++ C + GGPL V+ R+ +G+ C + G G+YAR+ T L + + DG C Sbjct: 743 PVPNSKMCGYKAGTDSCQGDSGGPLVVKEDGRWTVVGVVSYGLGCARR------GYAGVYARV-TNYLDWINTNIADGWCTSE 970
BLAST of EMLSAG00000010887 vs. C. finmarchicus
Match: gi|592837890|gb|GAXK01119654.1| (TSA: Calanus finmarchicus comp333980_c1_seq3 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 1.445e+0 Identity = 20/68 (29.41%), Postives = 30/68 (44.12%), Query Frame = 0 Query: 689 EDLLFPTDLHKICAFNTDSNPCTMNEGGPLTVRLYDRYVTMGIRIQHPACKLKNKTVPLGEPGLYARL 756 +++LF KICAF ++ C + GGPL + + +GI C PG+Y RL Sbjct: 188 KEMLFGDSDTKICAFREGADSCQGDSGGPLFIEHDGVFTQLGIVSYGYGCATH-------LPGVYTRL 370
BLAST of EMLSAG00000010887 vs. C. finmarchicus
Match: gi|592837891|gb|GAXK01119653.1| (TSA: Calanus finmarchicus comp333980_c1_seq2 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 1.445e+0 Identity = 20/68 (29.41%), Postives = 30/68 (44.12%), Query Frame = 0 Query: 689 EDLLFPTDLHKICAFNTDSNPCTMNEGGPLTVRLYDRYVTMGIRIQHPACKLKNKTVPLGEPGLYARL 756 +++LF KICAF ++ C + GGPL + + +GI C PG+Y RL Sbjct: 188 KEMLFGDSDTKICAFREGADSCQGDSGGPLFIEHDGVFTQLGIVSYGYGCATH-------LPGVYTRL 370
BLAST of EMLSAG00000010887 vs. L. salmonis peptides
Match: EMLSAP00000010887 (pep:novel supercontig:LSalAtl2s:LSalAtl2s725:163730:195599:1 gene:EMLSAG00000010887 transcript:EMLSAT00000010887 description:"maker-LSalAtl2s725-snap-gene-1.23") HSP 1 Score: 1715.28 bits (4441), Expect = 0.000e+0 Identity = 822/822 (100.00%), Postives = 822/822 (100.00%), Query Frame = 0 Query: 1 MDSRYNWATLSIRDLIVTLGVIPFVIDSQAVNYMHWKAGEALCKGYSFMNYGTMAQHSFNIVFLIRMCVLWPGYGSGNNYWAKLSVVIGGFLIPLIFIIFPALALAMQVFKCREPRLDPPHNKTAATGVALVFILIVTRFPYEIHQMVGLFNQGRTGDRMDPQWSSMQSNTNFEKEMIFNALIYIAPAIHPFGQQDNGNKERMKEMKSIPPQRNRAPQDMRSKEEPLVDRRXPVIIPAVSGSSGYYNARQXHPPTQHQNTQHQHPHHQQTHHPLKSHYDGNLSFEERQTMRAIADQNHFPLDNSFENHSIMTTSPNSNLPPVFEFEGLKYIDTARVEPRIAYSPEKTPPKTPDTPRYDQKPFADPVERFIQNNAWAHYPMEMVDFSIPPTLPESPMLIRSQSRVNDLDETLEVLEESPGSKKRNRNFNSSKEEFILSNGRPKKNQIKKPLTSPENQLLSRASGIEIKINLFIDKQGKPHMFNSCPCGLTDYEINDPRLLTTGVKVQKVVSKLSRLLKSVNSSDKNNYINEDGSIHIQDRTKYSNLDYLRGSNLHYDHSLARRRTRIHYEPWFRRRRSGRWKREAVSRIIQNNFFVLNITLDLPHSVENDSNNLNSNKMAYDDEYQDIFEKESEGQLRELFKSLIVKICNTDLEDASSQEEDDNLSDFEFDDIEKDVVVKNENFRTDLKEDLLFPTDLHKICAFNTDSNPCTMNEGGPLTVRLYDRYVTMGIRIQHPACKLKNKTVPLGEPGLYARLHTAVLRQLVPMLKDGECKHHIPTLKELGIILRHGVSSDVKKKKVKTKKGKVTFSIKKLKMGKQFGY 822 MDSRYNWATLSIRDLIVTLGVIPFVIDSQAVNYMHWKAGEALCKGYSFMNYGTMAQHSFNIVFLIRMCVLWPGYGSGNNYWAKLSVVIGGFLIPLIFIIFPALALAMQVFKCREPRLDPPHNKTAATGVALVFILIVTRFPYEIHQMVGLFNQGRTGDRMDPQWSSMQSNTNFEKEMIFNALIYIAPAIHPFGQQDNGNKERMKEMKSIPPQRNRAPQDMRSKEEPLVDRRXPVIIPAVSGSSGYYNARQXHPPTQHQNTQHQHPHHQQTHHPLKSHYDGNLSFEERQTMRAIADQNHFPLDNSFENHSIMTTSPNSNLPPVFEFEGLKYIDTARVEPRIAYSPEKTPPKTPDTPRYDQKPFADPVERFIQNNAWAHYPMEMVDFSIPPTLPESPMLIRSQSRVNDLDETLEVLEESPGSKKRNRNFNSSKEEFILSNGRPKKNQIKKPLTSPENQLLSRASGIEIKINLFIDKQGKPHMFNSCPCGLTDYEINDPRLLTTGVKVQKVVSKLSRLLKSVNSSDKNNYINEDGSIHIQDRTKYSNLDYLRGSNLHYDHSLARRRTRIHYEPWFRRRRSGRWKREAVSRIIQNNFFVLNITLDLPHSVENDSNNLNSNKMAYDDEYQDIFEKESEGQLRELFKSLIVKICNTDLEDASSQEEDDNLSDFEFDDIEKDVVVKNENFRTDLKEDLLFPTDLHKICAFNTDSNPCTMNEGGPLTVRLYDRYVTMGIRIQHPACKLKNKTVPLGEPGLYARLHTAVLRQLVPMLKDGECKHHIPTLKELGIILRHGVSSDVKKKKVKTKKGKVTFSIKKLKMGKQFGY Sbjct: 1 MDSRYNWATLSIRDLIVTLGVIPFVIDSQAVNYMHWKAGEALCKGYSFMNYGTMAQHSFNIVFLIRMCVLWPGYGSGNNYWAKLSVVIGGFLIPLIFIIFPALALAMQVFKCREPRLDPPHNKTAATGVALVFILIVTRFPYEIHQMVGLFNQGRTGDRMDPQWSSMQSNTNFEKEMIFNALIYIAPAIHPFGQQDNGNKERMKEMKSIPPQRNRAPQDMRSKEEPLVDRRXPVIIPAVSGSSGYYNARQXHPPTQHQNTQHQHPHHQQTHHPLKSHYDGNLSFEERQTMRAIADQNHFPLDNSFENHSIMTTSPNSNLPPVFEFEGLKYIDTARVEPRIAYSPEKTPPKTPDTPRYDQKPFADPVERFIQNNAWAHYPMEMVDFSIPPTLPESPMLIRSQSRVNDLDETLEVLEESPGSKKRNRNFNSSKEEFILSNGRPKKNQIKKPLTSPENQLLSRASGIEIKINLFIDKQGKPHMFNSCPCGLTDYEINDPRLLTTGVKVQKVVSKLSRLLKSVNSSDKNNYINEDGSIHIQDRTKYSNLDYLRGSNLHYDHSLARRRTRIHYEPWFRRRRSGRWKREAVSRIIQNNFFVLNITLDLPHSVENDSNNLNSNKMAYDDEYQDIFEKESEGQLRELFKSLIVKICNTDLEDASSQEEDDNLSDFEFDDIEKDVVVKNENFRTDLKEDLLFPTDLHKICAFNTDSNPCTMNEGGPLTVRLYDRYVTMGIRIQHPACKLKNKTVPLGEPGLYARLHTAVLRQLVPMLKDGECKHHIPTLKELGIILRHGVSSDVKKKKVKTKKGKVTFSIKKLKMGKQFGY 822
BLAST of EMLSAG00000010887 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold375_size191602-snap-gene-0.34 (protein:Tk05037 transcript:maker-scaffold375_size191602-snap-gene-0.34-mRNA-1 annotation:"c-c chemokine receptor type 4-like") HSP 1 Score: 227.254 bits (578), Expect = 3.584e-64 Identity = 165/473 (34.88%), Postives = 232/473 (49.05%), Query Frame = 0 Query: 52 GTMAQHSFNIVFLIRMCVLWPGYG-SGNNYWAKLSVVIGGFLIPLIFIIFPALALAMQVFKCREPRLDPPHNKTAATGVALVFILIVTRFPYEIHQMVGLFNQGRTGDRMDPQWSSMQSNT-----NFEKEMIFNALIYIAPAIHPF----------------------------GQQDNGNKERMKEMKSIPPQRNRAPQDMRSKEEPLVDRRXPVIIPA---VSG-SSGYYNARQXHPPTQHQNTQHQ-HPHHQQTHHPLKSHYDGNLSFEERQTMRAIADQNHFPLDNSFENHSIMTTSPNSNLPPVFEFEGLKYIDTARVEPRIAYSPEKTPPKTPDTPRYDQKPFADPVERFIQNNAWAHYPMEMVDFSIPPTLPESPM---------------LIRSQSRVNDLDETLEVLEESPGSKKRNRNFNSSKEE-FILSNGRPKKNQIKKPLTSPENQLLSRASGIEIKIN 469 G +A + NI+ I+ C +W G G S +N+W +LS+V+ GFL+PL +IFP +AL+MQ+ REP+LD PHN+ A +AL + + T+ P +I+ M+ LF Q G R S M+ T FE EMI +A++Y+A IHP Q+ NK++ + K P RNRAP +R +E L+ P I+ V+G G HQ +P+H T P Q ++ + DQ HF LDNSF+ S LPPVFE+ GLKY DTARVEP+I YSPEKTP KTP+ R+ PF P + N WA P+EMVD S ++P S +RS+ ++D+ +E L+ESP SK+R R S + + SNG +P TSP ++ SR SG+EI + Sbjct: 169 GALAYDAMNIITSIKTCTVWDGRGHSQSNFWVQLSLVLAGFLVPLALLIFPFIALSMQLCGAREPKLDHPHNRIAGIALALGLVFVATQAPAQIYMMLNLFQQSEIGFRT----SGMRQATPYMVMAFETEMIMHAIVYVACLIHPILYFAINPDYRAGVAVVWRNLYCNKDPVQRQRQEENKKQRDQQKRQYPARNRAPPILRRNQEGLLPANQPQIVAGPQIVAGPPGGVQYYPYPPAQQPQPGVFHQSYPNHGGTIPP--------------QQLQLVPDQ-HF-LDNSFDRLS-------PQLPPVFEYNGLKYTDTARVEPKIGYSPEKTPDKTPEMKRFMSAPFQGPAG--VPN--WAPAPVEMVDLSPRGSVPSSSGNPEFKLESMESSPGNTLRSRRMREEVDDIVERLDESPRSKQRRRTQESQQTSGYSSSNG--TGVHTSRP-TSPLDRPTSRQSGVEIIVT 607 The following BLAST results are available for this feature:
BLAST of EMLSAG00000010887 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000010887 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 12
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BLAST of EMLSAG00000010887 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000010887 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000010887 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000010887 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000010887 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s725:163730..195599+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000010887-693653 ID=EMLSAG00000010887-693653|Name=EMLSAG00000010887|organism=Lepeophtheirus salmonis|type=gene|length=31870bp|location=Sequence derived from alignment at LSalAtl2s725:163730..195599+ (Lepeophtheirus salmonis)back to top Add to Basket
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