EMLSAG00000011218, EMLSAG00000011218-693984 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011218
Unique NameEMLSAG00000011218-693984
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000011218 vs. C. finmarchicus
Match: gi|592829400|gb|GAXK01128144.1| (TSA: Calanus finmarchicus comp5685985_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 53.9138 bits (128), Expect = 1.491e-9
Identity = 33/93 (35.48%), Postives = 45/93 (48.39%), Query Frame = 0 
Query:    1 KHYLAIVDRYSNLLLVHKF---------------------PSTPTSKPRTSIDSIETQNFFARWGIALRLSSLLFPQSNGLAESVIKSIKAPV 72
            ++YLA+ DRYSN + + K                      P   +S   +   + ET+NF  RWGI+ R+SS  FPQSN  AE  +KS K  V
Sbjct:  270 RNYLAMADRYSNWISLFKLVKDDAYNLLQALRDYSTCFGIPRRLSSDGASIFTAAETENFCKRWGISQRISSSYFPQSNKRAEVAVKSCKRMV 548
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BLAST of EMLSAG00000011218 vs. C. finmarchicus
Match: gi|592935978|gb|GAXK01022575.1| (TSA: Calanus finmarchicus comp7731694_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 48.1358 bits (113), Expect = 1.002e-7
Identity = 30/90 (33.33%), Postives = 42/90 (46.67%), Query Frame = 0 
Query:    1 KHYLAIVDRYSNLLLVHKF---------------------PSTPTSKPRTSIDSIETQNFFARWGIALRLSSLLFPQSNGLAESVIKSIK 69
            K YLA VDRYSN L + +                      P T T+   +   S E +++  RWGI  R+SS  +P++N  AE  +KS K
Sbjct:   10 KSYLATVDRYSNWLSIFQLARDDSANIIKTIRDFASCWGVPLTMTTDGASVFTSKEMEDWLQRWGITHRISSYYYPRANKRAEVAVKSAK 279
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BLAST of EMLSAG00000011218 vs. C. finmarchicus
Match: gi|592857974|gb|GAXK01099588.1| (TSA: Calanus finmarchicus comp2303658_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 50.0618 bits (118), Expect = 1.835e-7
Identity = 32/90 (35.56%), Postives = 42/90 (46.67%), Query Frame = 0 
Query:    1 KHYLAIVDRYSNLLLVHKFPSTPTSK---------------PRTSID------SIETQNFFARWGIALRLSSLLFPQSNGLAESVIKSIK 69
            ++YLA+ DRYSN L + K P   +                  R S D      S ET  F  RWGI+ R+ S  +P+SN  AE  +KS K
Sbjct:  938 RNYLAMADRYSNWLSLFKLPEDDSKHLIQVIRDYSSYFGIPKRLSSDGASIFTSTETDTFCKRWGISQRIGSSYYPESNKRAEVAVKSCK 1207
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BLAST of EMLSAG00000011218 vs. C. finmarchicus
Match: gi|592857975|gb|GAXK01099587.1| (TSA: Calanus finmarchicus comp2303658_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 50.0618 bits (118), Expect = 1.843e-7
Identity = 32/90 (35.56%), Postives = 42/90 (46.67%), Query Frame = 0 
Query:    1 KHYLAIVDRYSNLLLVHKFPSTPTSK---------------PRTSID------SIETQNFFARWGIALRLSSLLFPQSNGLAESVIKSIK 69
            ++YLA+ DRYSN L + K P   +                  R S D      S ET  F  RWGI+ R+ S  +P+SN  AE  +KS K
Sbjct:  938 RNYLAMADRYSNWLSLFKLPEDDSKHLIQVIRDYSSYFGIPKRLSSDGASIFTSTETDTFCKRWGISQRIGSSYYPESNKRAEVAVKSCK 1207
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BLAST of EMLSAG00000011218 vs. C. finmarchicus
Match: gi|592867352|gb|GAXK01090210.1| (TSA: Calanus finmarchicus comp4045122_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 45.0542 bits (105), Expect = 1.183e-6
Identity = 30/90 (33.33%), Postives = 45/90 (50.00%), Query Frame = 0 
Query:    1 KHYLAIVDRYSNLLLVHKFPSTPTSKPRTSI-----------------DSI----ETQNFFARWGIALRLSSLLFPQSNGLAESVIKSIK 69
            K YL IVDRYSN L + + P+  +S+   ++                 DS+    E +++  RW +  RLSS  +P+SN  AE  +KS K
Sbjct:   70 KSYLVIVDRYSNWLSLFQLPNDNSSQVIKTLRNYFTTWGVARSFSSDGDSVFTSRELRDWLQRWDVDQRLSSSYYPRSNKRAEVAVKSGK 339
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BLAST of EMLSAG00000011218 vs. C. finmarchicus
Match: gi|592887294|gb|GAXK01071081.1| (TSA: Calanus finmarchicus comp6475906_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.5874 bits (96), Expect = 1.751e-5
Identity = 30/94 (31.91%), Postives = 42/94 (44.68%), Query Frame = 0 
Query:    1 KHYLAIVDRYSNLL---------------LVHKFPSTPTSKPRTSID------SIETQNFFARWGIALRLSSLLFPQSNGLAESVIKSIKAPVL 73
            K YL +VDRYSN L               ++  + +T       S D      S E + +  RW +  RLSS  FP+SN  AE  +KS K  ++
Sbjct:   40 KSYLVVVDRYSNWLSLFQLTRDTSANVIKVLRDYFTTWGVAQSISTDGDKVFTSEELRTWLKRWDVYQRLSSAYFPRSNKRAEVAVKSGKRMIM 321
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BLAST of EMLSAG00000011218 vs. C. finmarchicus
Match: gi|592790961|gb|GAXK01163607.1| (TSA: Calanus finmarchicus comp6733688_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.5874 bits (96), Expect = 5.405e-5
Identity = 17/35 (48.57%), Postives = 23/35 (65.71%), Query Frame = 0 
Query:   35 ETQNFFARWGIALRLSSLLFPQSNGLAESVIKSIK 69
            +T+NF   WG+  RLSS+ FP SN  AE  +K +K
Sbjct:   21 DTENFLKAWGVHHRLSSVAFPHSNCRAELAVKQVK 125
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BLAST of EMLSAG00000011218 vs. C. finmarchicus
Match: gi|592812664|gb|GAXK01141904.1| (TSA: Calanus finmarchicus comp2753032_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 39.6614 bits (91), Expect = 4.568e-4
Identity = 28/89 (31.46%), Postives = 40/89 (44.94%), Query Frame = 0 
Query:    2 HYLAIVDRYSNLLLVHKFPS---------------------TPTSKPRTSIDSIETQNFFARWGIALRLSSLLFPQSNGLAESVIKSIK 69
            +YLA+VDRYS  L + + P                      T TS   +   S   ++F  RWGI  R+++   PQ+N  AE  +KS K
Sbjct: 1614 NYLAVVDRYSQWLSIFQLPKDDSEEVVKVLREYIGTFGIPCTLTSDGASVFTSKFMESFCDRWGIIHRVATAYNPQANKRAEVAVKSAK 1880
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BLAST of EMLSAG00000011218 vs. C. finmarchicus
Match: gi|592899025|gb|GAXK01059350.1| (TSA: Calanus finmarchicus comp5785857_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 37.7354 bits (86), Expect = 1.544e-3
Identity = 18/37 (48.65%), Postives = 21/37 (56.76%), Query Frame = 0 
Query:   33 SIETQNFFARWGIALRLSSLLFPQSNGLAESVIKSIK 69
            S E   F  RWG   R+SS  FP+SN  AE  +KS K
Sbjct:  613 SAEMAEFRTRWGFKQRISSAYFPRSNKRAEVGVKSAK 723
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BLAST of EMLSAG00000011218 vs. C. finmarchicus
Match: gi|592861562|gb|GAXK01096000.1| (TSA: Calanus finmarchicus comp7493218_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 2.529e-3
Identity = 16/34 (47.06%), Postives = 21/34 (61.76%), Query Frame = 0 
Query:   36 TQNFFARWGIALRLSSLLFPQSNGLAESVIKSIK 69
            T+NF  R G+  RLSS+ FP SN  AE  + + K
Sbjct:    1 TENFLVRLGVHHRLSSVGFPHSNQKAEKAVGAAK 102
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BLAST of EMLSAG00000011218 vs. L. salmonis peptides
Match: EMLSAP00000011218 (pep:novel supercontig:LSalAtl2s:LSalAtl2s768:187911:188209:-1 gene:EMLSAG00000011218 transcript:EMLSAT00000011218 description:"maker-LSalAtl2s768-snap-gene-1.12")

HSP 1 Score: 159.073 bits (401), Expect = 6.231e-52
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 
Query:    1 KHYLAIVDRYSNLLLVHKFPSTPTSKPRTSIDSIETQNFFARWGIALRLSSLLFPQSNGLAESVIKSIKAPVLKTWTT 78
            KHYLAIVDRYSNLLLVHKFPSTPTSKPRTSIDSIETQNFFARWGIALRLSSLLFPQSNGLAESVIKSIKAPVLKTWTT
Sbjct:    1 KHYLAIVDRYSNLLLVHKFPSTPTSKPRTSIDSIETQNFFARWGIALRLSSLLFPQSNGLAESVIKSIKAPVLKTWTT 78
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BLAST of EMLSAG00000011218 vs. L. salmonis peptides
Match: EMLSAP00000002862 (pep:novel supercontig:LSalAtl2s:LSalAtl2s16595:2:760:1 gene:EMLSAG00000002862 transcript:EMLSAT00000002862 description:"augustus-LSalAtl2s16595-processed-gene-0.0")

HSP 1 Score: 102.064 bits (253), Expect = 6.362e-28
Identity = 59/100 (59.00%), Postives = 62/100 (62.00%), Query Frame = 0 
Query:    1 KHYLAIVDRYSNLLLVHKFPSTPTSKPRTS----------------------IDSIETQNFFARWGIALRLSSLLFPQSNGLAESVIKSIKAPVLKTWTT 78
            KHYLAIVDRYSN LLVHKF S PTSK   S                        + ETQNFFARWGIA RLSS  FPQSNGLAES +KSIKA +LKT  T
Sbjct:   21 KHYLAIVDRYSNFLLVHKFSSAPTSKSLISSLLHHIATFGRPLRIFSDGGLQFTAAETQNFFARWGIAHRLSSPHFPQSNGLAESAVKSIKALLLKTGNT 120
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BLAST of EMLSAG00000011218 vs. L. salmonis peptides
Match: EMLSAP00000006569 (pep:novel supercontig:LSalAtl2s:LSalAtl2s35:845590:849230:1 gene:EMLSAG00000006569 transcript:EMLSAT00000006569 description:"snap_masked-LSalAtl2s35-processed-gene-8.19")

HSP 1 Score: 51.2174 bits (121), Expect = 4.881e-10
Identity = 28/51 (54.90%), Postives = 32/51 (62.75%), Query Frame = 0 
Query:   28 RTSIDSIETQNFFARWGIALRLSSLLFPQSNGLAESVIKSIKAPVLKTWTT 78
            R      E QN FARWGI+ R+SS  F QS  LAES +KSIKA +LK   T
Sbjct:   11 RVEFIGTEIQNLFARWGISHRVSSPHFCQSIRLAESAVKSIKARLLKAGNT 61
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BLAST of EMLSAG00000011218 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold374_size191929-processed-gene-0.10 (protein:Tk01257 transcript:snap_masked-scaffold374_size191929-processed-gene-0.10-mRNA-1 annotation:"PREDICTED: uncharacterized protein K02A2.6-like")

HSP 1 Score: 51.6026 bits (122), Expect = 7.348e-11
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 0 
Query:   35 ETQNFFARWGIALRLSSLLFPQSNGLAESVIKSIKAPVLKT 75
            ETQ F   WG+  RLS+  +PQSNGLAES +K++K  +LKT
Sbjct:   11 ETQTFLVDWGVRHRLSTAHYPQSNGLAESAVKALKHLLLKT 51
[Close]
BLAST of EMLSAG00000011218 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold531_size145796-snap-gene-0.25 (protein:Tk12612 transcript:maker-scaffold531_size145796-snap-gene-0.25-mRNA-1 annotation:"poly protein")

HSP 1 Score: 50.8322 bits (120), Expect = 1.096e-9
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 0 
Query:   40 FARWGIALRLSSLLFPQSNGLAESVIKSIKAPVLKT 75
            F +WG+  RLS+  FPQSNGLAES +K+IKA +LKT
Sbjct:   16 FPQWGVRHRLSTAEFPQSNGLAESAVKAIKAFLLKT 51
[Close]
BLAST of EMLSAG00000011218 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold531_size145796-snap-gene-0.24 (protein:Tk12611 transcript:maker-scaffold531_size145796-snap-gene-0.24-mRNA-1 annotation:"---NA---")

HSP 1 Score: 50.8322 bits (120), Expect = 1.096e-9
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 0 
Query:   40 FARWGIALRLSSLLFPQSNGLAESVIKSIKAPVLKT 75
            F +WG+  RLS+  FPQSNGLAES +K+IKA +LKT
Sbjct:   16 FPQWGVRHRLSTAEFPQSNGLAESAVKAIKAFLLKT 51
[Close]
BLAST of EMLSAG00000011218 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1225_size54570-snap-gene-0.8 (protein:Tk06437 transcript:maker-scaffold1225_size54570-snap-gene-0.8-mRNA-1 annotation:"poly protein")

HSP 1 Score: 45.4394 bits (106), Expect = 1.070e-7
Identity = 21/41 (51.22%), Postives = 30/41 (73.17%), Query Frame = 0 
Query:   35 ETQNFFARWGIALRLSSLLFPQSNGLAESVIKSIKAPVLKT 75
            E Q+F    G+  RLS+  +P SNGLAESV+K++K+ +LKT
Sbjct:   34 EIQHFLVHLGVCHRLSTANYPLSNGLAESVVKTLKSLLLKT 74
[Close]
BLAST of EMLSAG00000011218 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1752_size28949-snap-gene-0.4 (protein:Tk00995 transcript:maker-scaffold1752_size28949-snap-gene-0.4-mRNA-1 annotation:"PREDICTED: uncharacterized protein K02A2.6-like")

HSP 1 Score: 44.2838 bits (103), Expect = 4.017e-7
Identity = 31/96 (32.29%), Postives = 41/96 (42.71%), Query Frame = 0 
Query:    2 HYLAIVDRYSNLLLVHKFPSTPTSKPRTSI----------------------DSIETQNFFARWGIALRLSSLLFPQSNGLAESVIKSIKAPVLKT 75
            HYL  VDRYS   +V  FPS P+S   T +                       + E + F   WG+  + SS    QSNG AE  +K +K  + KT
Sbjct:   77 HYLVYVDRYSGFPMVAMFPSAPSSSDVTKVLRSLFSLMGVPQVLRSDQGPQYRTEEIRIFLKEWGVLWKPSSPYNAQSNGHAEVSVKVVKRLLQKT 172
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011218 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011218 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 19
Match NameE-valueIdentityDescription
gi|592829400|gb|GAXK01128144.1|1.491e-935.48TSA: Calanus finmarchicus comp5685985_c0_seq1 tran... [more]
gi|592935978|gb|GAXK01022575.1|1.002e-733.33TSA: Calanus finmarchicus comp7731694_c0_seq1 tran... [more]
gi|592857974|gb|GAXK01099588.1|1.835e-735.56TSA: Calanus finmarchicus comp2303658_c0_seq2 tran... [more]
gi|592857975|gb|GAXK01099587.1|1.843e-735.56TSA: Calanus finmarchicus comp2303658_c0_seq1 tran... [more]
gi|592867352|gb|GAXK01090210.1|1.183e-633.33TSA: Calanus finmarchicus comp4045122_c0_seq1 tran... [more]
gi|592887294|gb|GAXK01071081.1|1.751e-531.91TSA: Calanus finmarchicus comp6475906_c0_seq1 tran... [more]
gi|592790961|gb|GAXK01163607.1|5.405e-548.57TSA: Calanus finmarchicus comp6733688_c0_seq1 tran... [more]
gi|592812664|gb|GAXK01141904.1|4.568e-431.46TSA: Calanus finmarchicus comp2753032_c0_seq1 tran... [more]
gi|592899025|gb|GAXK01059350.1|1.544e-348.65TSA: Calanus finmarchicus comp5785857_c0_seq1 tran... [more]
gi|592861562|gb|GAXK01096000.1|2.529e-347.06TSA: Calanus finmarchicus comp7493218_c0_seq1 tran... [more]

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BLAST of EMLSAG00000011218 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000112186.231e-52100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s768:18791... [more]
EMLSAP000000028626.362e-2859.00pep:novel supercontig:LSalAtl2s:LSalAtl2s16595:2:7... [more]
EMLSAP000000065694.881e-1054.90pep:novel supercontig:LSalAtl2s:LSalAtl2s35:845590... [more]
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BLAST of EMLSAG00000011218 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011218 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011218 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011218 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 5
Match NameE-valueIdentityDescription
snap_masked-scaffold374_size191929-processed-gene-0.107.348e-1156.10protein:Tk01257 transcript:snap_masked-scaffold374... [more]
maker-scaffold531_size145796-snap-gene-0.251.096e-963.89protein:Tk12612 transcript:maker-scaffold531_size1... [more]
maker-scaffold531_size145796-snap-gene-0.241.096e-963.89protein:Tk12611 transcript:maker-scaffold531_size1... [more]
maker-scaffold1225_size54570-snap-gene-0.81.070e-751.22protein:Tk06437 transcript:maker-scaffold1225_size... [more]
maker-scaffold1752_size28949-snap-gene-0.44.017e-732.29protein:Tk00995 transcript:maker-scaffold1752_size... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s768supercontigLSalAtl2s768:187911..188209 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s768-snap-gene-1.12
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011218 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011218EMLSAT00000011218-707065Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s768:187911..188209-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011218-693984 ID=EMLSAG00000011218-693984|Name=EMLSAG00000011218|organism=Lepeophtheirus salmonis|type=gene|length=299bp|location=Sequence derived from alignment at LSalAtl2s768:187911..188209- (Lepeophtheirus salmonis)
AAGCACTATTTGGCAATAGTCGACCGATACTCCAACTTACTTCTCGTCCA
TAAATTTCCGTCCACACCAACATCTAAGTCCCTAATCAGCAGTCTACTTG
ACCACAACACTACCTTCTGTAGACCATTAAAACAAATTTCAGACCGAGGA
CTTCAATTGACAGTATAGAAACGCAAAACTTCTTTGCCCGCTGGGGCATC
GCACTTAGACTTTCATCACTACTTTTCCCTCAATCTAACGGACTAGCTGA
ATCCGTCATTAAGTCAATTAAGGCTCCCGTCCTTAAAACTTGGACCACA
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