EMLSAG00000011260, EMLSAG00000011260-694026 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011260
Unique NameEMLSAG00000011260-694026
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000011260 vs. GO
Match: - (symbol:NCAPD2 "Condensin complex subunit 1" species:9606 "Homo sapiens" [GO:0000793 "condensed chromosome" evidence=IEA] [GO:0007076 "mitotic chromosome condensation" evidence=IEA] [GO:0045120 "pronucleus" evidence=IEA] InterPro:IPR026971 GO:GO:0000793 GO:GO:0007076 GO:GO:0045120 EMBL:AC006064 HGNC:HGNC:24305 ChiTaRS:NCAPD2 PANTHER:PTHR14222 ProteinModelPortal:F5GZK7 Ensembl:ENST00000539714 NextBio:35507838 ArrayExpress:F5GZK7 Bgee:F5GZK7 Uniprot:F5GZK7)

HSP 1 Score: 46.2098 bits (108), Expect = 7.140e-6
Identity = 19/64 (29.69%), Postives = 37/64 (57.81%), Query Frame = 0 
Query:    5 FVIPMEREDLLKADSLDQYAVLKILNVRELKPRMKEIEFDIRNDGSCFGQKDWFDSFYSVIFRF 68
            F +P+  E+LLK+  ++QY V ++L+++ L P+++  +   R  G        FD+ YS++  F
Sbjct:    8 FHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGP-LAMLQHFDTIYSILHHF 70
[Close]
BLAST of EMLSAG00000011260 vs. GO
Match: - (symbol:NCAPD2 "Condensin complex subunit 1" species:9606 "Homo sapiens" [GO:0007076 "mitotic chromosome condensation" evidence=IEA] InterPro:IPR026971 GO:GO:0007076 EMBL:AC006064 HGNC:HGNC:24305 ChiTaRS:NCAPD2 PANTHER:PTHR14222 Ensembl:ENST00000539084 NextBio:35508714 ArrayExpress:F5H431 Bgee:F5H431 Uniprot:F5H431)

HSP 1 Score: 44.669 bits (104), Expect = 1.387e-5
Identity = 18/61 (29.51%), Postives = 36/61 (59.02%), Query Frame = 0 
Query:    5 FVIPMEREDLLKADSLDQYAVLKILNVRELKPRMKEIEFDIRNDGSCFGQKDWFDSFYSVI 65
            F +P+  E+LLK+  ++QY V ++L+++ L P+++  +   R  G        FD+ YS++
Sbjct:    8 FHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGP-LAMLQHFDTIYSIL 67
[Close]
BLAST of EMLSAG00000011260 vs. GO
Match: - (symbol:NCAPD2 "Condensin complex subunit 1" species:9606 "Homo sapiens" [GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000796 "condensin complex" evidence=IDA] [GO:0000797 "condensin core heterodimer" evidence=NAS] [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0005737 "cytoplasm" evidence=NAS;IDA] [GO:0005829 "cytosol" evidence=TAS] [GO:0007076 "mitotic chromosome condensation" evidence=IDA;NAS] [GO:0042393 "histone binding" evidence=IDA;NAS] [GO:0045120 "pronucleus" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0000228 "nuclear chromosome" evidence=IDA] InterPro:IPR007673 InterPro:IPR016024 InterPro:IPR026971 PIRSF:PIRSF017127 GO:GO:0005829 GO:GO:0005634 Reactome:REACT_115566 SUPFAM:SSF48371 Reactome:REACT_21300 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CH471116 GO:GO:0042393 GO:GO:0007076 GO:GO:0045120 EMBL:AC006064 EMBL:D63880 EMBL:BC028182 RefSeq:NP_055680.3 UniGene:Hs.5719 ProteinModelPortal:Q15021 SMR:Q15021 BioGrid:115246 IntAct:Q15021 MINT:MINT-3030640 STRING:9606.ENSP00000325017 PhosphoSite:Q15021 DMDM:259016362 PaxDb:Q15021 PRIDE:Q15021 Ensembl:ENST00000315579 GeneID:9918 KEGG:hsa:9918 UCSC:uc001qoo.2 CTD:9918 GeneCards:GC12P006602 H-InvDB:HIX0201829 HGNC:HGNC:24305 HPA:CAB012423 HPA:HPA036947 HPA:HPA037363 neXtProt:NX_Q15021 PharmGKB:PA162397021 eggNOG:COG5098 HOGENOM:HOG000068001 HOVERGEN:HBG038048 InParanoid:Q15021 KO:K06677 OMA:ATEKVAC OrthoDB:EOG7FJGZN PhylomeDB:Q15021 TreeFam:TF105712 ChiTaRS:NCAPD2 GeneWiki:NCAPD2 GenomeRNAi:9918 NextBio:37412 PRO:PR:Q15021 ArrayExpress:Q15021 Bgee:Q15021 CleanEx:HS_NCAPD2 Genevestigator:Q15021 GO:GO:0000797 InterPro:IPR024324 PANTHER:PTHR14222 Pfam:PF12922 Uniprot:Q15021)

HSP 1 Score: 44.669 bits (104), Expect = 1.715e-4
Identity = 31/124 (25.00%), Postives = 58/124 (46.77%), Query Frame = 0 
Query:    5 FVIPMEREDLLKADSLDQYAVLKILNVRELKPRMKEIEFDIRNDGSCFGQKDWFDSFYSVIFRFHEELPTNIKATAHDCLLNAGDQLLQRVDSILNEQDPEDLDEKS-----KDNCNQFLEYLE 123
            F +P+  E+LLK+  ++QY V ++L+++ L P+++  +   R  G        FD+ YS++  F    P  +K      L+    +  Q + +IL++      D  +     K NC   +  LE
Sbjct:    8 FHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGP-LAMLQHFDTIYSILHHFRSIDP-GLKEDTLQFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMNCYALIRLLE 129
[Close]
BLAST of EMLSAG00000011260 vs. GO
Match: - (symbol:Ncapd2 "non-SMC condensin I complex, subunit D2" species:10116 "Rattus norvegicus" [GO:0000228 "nuclear chromosome" evidence=IEA;ISO] [GO:0000793 "condensed chromosome" evidence=ISO] [GO:0000796 "condensin complex" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0007076 "mitotic chromosome condensation" evidence=IEA;ISO] [GO:0042393 "histone binding" evidence=ISO] [GO:0045120 "pronucleus" evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR007673 InterPro:IPR016024 InterPro:IPR026971 PIRSF:PIRSF017127 RGD:1562596 GO:GO:0005737 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0007076 GO:GO:0000228 GO:GO:0045120 CTD:9918 KO:K06677 OrthoDB:EOG7FJGZN TreeFam:TF105712 InterPro:IPR024324 PANTHER:PTHR14222 Pfam:PF12922 GeneTree:ENSGT00390000017108 GO:GO:0000796 OMA:ERQWCDL EMBL:AABR06033517 RefSeq:XP_001065923.3 RefSeq:XP_575668.4 UniGene:Rn.7870 PRIDE:D3ZHP6 Ensembl:ENSRNOT00000025889 GeneID:362438 KEGG:rno:362438 UCSC:RGD:1562596 NextBio:679937 Uniprot:D3ZHP6)

HSP 1 Score: 43.5134 bits (101), Expect = 3.783e-4
Identity = 33/124 (26.61%), Postives = 57/124 (45.97%), Query Frame = 0 
Query:    5 FVIPMEREDLLKADSLDQYAVLKILNVRELKPRMKEIEFDIRNDGSCFGQKDWFDSFYSVIFRFHEELPTNIKATAHDCLLNAGDQLLQRVDSILNEQDPEDLDEKS-----KDNCNQFLEYLE 123
            F +P+  E+LLK+  ++QY V ++L ++ L  +++  +   R  G      D FD+ YS+I  F    P  +K    + L+       Q + SIL++      D  +     K NC   +  LE
Sbjct:    8 FHLPLSPEELLKSRGVNQYVVQEVLPIKHLPTQLRAFQSAFRAQGP-LAILDHFDTIYSIIHHFRSIEP-GLKEDTLEFLMKVVSCHSQELSSILDDAALSGSDRSAHLNALKMNCYALIRLLE 129
[Close]
BLAST of EMLSAG00000011260 vs. GO
Match: - (symbol:ncapd2 "Condensin complex subunit 1" species:8355 "Xenopus laevis" [GO:0005829 "cytosol" evidence=TAS] InterPro:IPR007673 InterPro:IPR016024 InterPro:IPR026971 PIRSF:PIRSF017127 EMBL:AF067969 GO:GO:0005829 GO:GO:0005634 GO:GO:0005694 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0007076 CTD:9918 HOVERGEN:HBG038048 KO:K06677 InterPro:IPR024324 PANTHER:PTHR14222 Pfam:PF12922 EMBL:AF072717 PIR:T14900 RefSeq:NP_001081840.1 UniGene:Xl.3351 ProteinModelPortal:Q9YHY6 BioGrid:99415 DIP:DIP-48587N PRIDE:Q9YHY6 GeneID:398080 KEGG:xla:398080 Xenbase:XB-GENE-5854852 Uniprot:Q9YHY6)

HSP 1 Score: 42.743 bits (99), Expect = 6.543e-4
Identity = 23/70 (32.86%), Postives = 36/70 (51.43%), Query Frame = 0 
Query:    1 MTINFVIPMEREDLLKADSLDQYAVLKILNVRELKPRMKEIEFDIRNDGS-CFGQKDWFDSFYSVIFRFH 69
            MT +F IP+   DLLK+  + QY V ++L VR +  +    +   R +   C  Q   FD+ YS++  F 
Sbjct:    1 MTFHFHIPLAFRDLLKSGGIGQYVVQEVLPVRHVDAQFAAFQTSFRTEAPLCILQH--FDTLYSILHHFR 68
[Close]
BLAST of EMLSAG00000011260 vs. GO
Match: - (symbol:NCAPD2 "Condensin complex subunit 1" species:9913 "Bos taurus" [GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0000796 "condensin complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0007076 "mitotic chromosome condensation" evidence=IEA] [GO:0045120 "pronucleus" evidence=IEA] InterPro:IPR007673 InterPro:IPR016024 InterPro:IPR026971 PIRSF:PIRSF017127 GO:GO:0005737 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0007076 GO:GO:0000228 GO:GO:0045120 OMA:ATEKVAC OrthoDB:EOG7FJGZN TreeFam:TF105712 InterPro:IPR024324 PANTHER:PTHR14222 Pfam:PF12922 GeneTree:ENSGT00390000017108 GO:GO:0000796 EMBL:DAAA02014466 EMBL:DAAA02014463 EMBL:DAAA02014464 EMBL:DAAA02014465 ProteinModelPortal:F1N3G4 PRIDE:F1N3G4 Ensembl:ENSBTAT00000019603 ArrayExpress:F1N3G4 Uniprot:F1N3G4)

HSP 1 Score: 42.3578 bits (98), Expect = 8.964e-4
Identity = 32/124 (25.81%), Postives = 58/124 (46.77%), Query Frame = 0 
Query:    5 FVIPMEREDLLKADSLDQYAVLKILNVRELKPRMKEIEFDIRNDGSCFGQKDWFDSFYSVIFRFHEELPTNIKATAHDCLLNAGDQLLQRVDSILNEQDPEDLDEKS-----KDNCNQFLEYLE 123
            F +P+  E+LLK+  ++QY V ++L++R L   +K  +   R  G      + FD+ YS++  F    P  +K    + L+    +  Q + +IL++      D  +     K NC   +  LE
Sbjct:    8 FHLPLSPEELLKSGGVNQYVVQEVLSIRHLPSYLKAFQTAFRAQGP-LAVLEHFDTIYSILHHFRSIDP-GLKEDTLEFLIKVVSRHSQELPAILDDAALSVSDRSAHLNALKMNCYALIRLLE 129
[Close]
BLAST of EMLSAG00000011260 vs. C. finmarchicus
Match: gi|592776638|gb|GAXK01177930.1| (TSA: Calanus finmarchicus comp14068_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 58.5362 bits (140), Expect = 1.927e-9
Identity = 33/120 (27.50%), Postives = 62/120 (51.67%), Query Frame = 0 
Query:    4 NFVIPMEREDLLKADSLDQYAVLKILNVRELKPRMKEIEFDIRNDGSCFGQKDWFDSFYSVIFRFHEELPTNIKATAHDCLLNAGDQLLQRVDSILNE-QDPEDLDEKSKDNCNQFLEYL 122
            NFVIP+ R+DL +A + +QY V  + N R+LK ++++    ++  G+ F   + FD  +S++  + +    ++K    D ++     L+  +  +L   Q  E  D  S  NC + + YL
Sbjct: 4552 NFVIPLNRDDLFEAATRNQYTVENVYNTRDLKIKLQDCTISVQQQGAEFVLTEGFDVIFSLLQEYSKNATFDMKQQGFDIVVRGMASLVDSLAGVLTSGQLLETEDRVSNLNCMKMMLYL 4911

HSP 2 Score: 43.1282 bits (100), Expect = 1.766e-4
Identity = 21/62 (33.87%), Postives = 35/62 (56.45%), Query Frame = 0 
Query:   79 TAHDCLLNAGDQLLQRVDSILNEQDPEDLDEKSKDNCNQFLEYLEDHIHDINAHCNPYTFSL 140
            +   C+L    +++ +V S       EDLDE  +D+ + FL+ LEDH+HDI+AH   +   +
Sbjct: 3760 SMRKCVLGVMGEIVAKVLS------GEDLDENGRDDRDSFLDCLEDHMHDIHAHVRSHVLQI 3927
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BLAST of EMLSAG00000011260 vs. C. finmarchicus
Match: gi|592831792|gb|GAXK01125752.1| (TSA: Calanus finmarchicus comp310113_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 7.444e-1
Identity = 16/52 (30.77%), Postives = 26/52 (50.00%), Query Frame = 0 
Query:    3 INFVIPMEREDLLKADSLDQYAVLKILNVRELKPRMKEIEFDIRNDGSCFGQ 54
            +NFV+P++   L K DSLD+Y+  ++        R+  I    R  G C  +
Sbjct:  710 LNFVLPVKTRSLRKCDSLDRYSKGRLT*AGPSGLRLAYIRGLFRITGGCLPK 865
[Close]
BLAST of EMLSAG00000011260 vs. C. finmarchicus
Match: gi|592927590|gb|GAXK01030877.1| (TSA: Calanus finmarchicus comp116749_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 1.078e+0
Identity = 12/40 (30.00%), Postives = 21/40 (52.50%), Query Frame = 0 
Query:   45 IRNDGSCFGQKD--WFDSFYSVIFRFHEELPTNIKATAHD 82
            I  +GSC  + D  +F  FY +++R H  L   + +  H+
Sbjct:  384 IGTEGSCIAKSDILYFPGFYQILWRIHSPLNIPVTSAPHE 503
[Close]
BLAST of EMLSAG00000011260 vs. C. finmarchicus
Match: gi|592904852|gb|GAXK01053523.1| (TSA: Calanus finmarchicus comp1550491_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.456e+0
Identity = 41/168 (24.40%), Postives = 73/168 (43.45%), Query Frame = 0 
Query:   18 DSLDQYAVLKILN-----VRELKPRMKEIEFDIRNDGSCFGQKDWFDSFYSVIFRFHEELPTNIKATAHDCLLNAGDQLLQ-----RVDSI-LNEQ--DPEDLDEKSKDNCNQFLEYLEDHIHDINA--------HCNPYTFSLPIEEL---ESQLNAESKKLQDLEG 161
            +S D  AVL +++      ++   +  EI   IRN+ + F +  W DS+Y   F+  E +   +        L   DQ+ Q     R+D + L E+  DP D+     D C + ++ +   I  +          +C+  T  L  +EL   + QL  E   ++D++G
Sbjct: 1026 ESFDSSAVLNVMSNASCFSKKENNQAAEIRRIIRNEWAHFNESTWSDSYYLKCFQLMENMVEMMPKPEDVKNLFDKDQIKQKLYKWRIDGLKLMERNVDP-DIISTVLDECRKLIKSVSSEIESVQEIRVVMDALNCSLKTLELNQQELKEDQEQLKEEHLLIKDIQG 1526
[Close]
BLAST of EMLSAG00000011260 vs. C. finmarchicus
Match: gi|592904849|gb|GAXK01053526.1| (TSA: Calanus finmarchicus comp1550491_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.457e+0
Identity = 41/168 (24.40%), Postives = 73/168 (43.45%), Query Frame = 0 
Query:   18 DSLDQYAVLKILN-----VRELKPRMKEIEFDIRNDGSCFGQKDWFDSFYSVIFRFHEELPTNIKATAHDCLLNAGDQLLQ-----RVDSI-LNEQ--DPEDLDEKSKDNCNQFLEYLEDHIHDINA--------HCNPYTFSLPIEEL---ESQLNAESKKLQDLEG 161
            +S D  AVL +++      ++   +  EI   IRN+ + F +  W DS+Y   F+  E +   +        L   DQ+ Q     R+D + L E+  DP D+     D C + ++ +   I  +          +C+  T  L  +EL   + QL  E   ++D++G
Sbjct:  585 ESFDSSAVLNVMSNASCFSKKENNQAAEIRRIIRNEWAHFNESTWSDSYYLKCFQLMENMVEMMPKPEDVKNLFDKDQIKQKLYKWRIDGLKLMERNVDP-DIISTVLDECRKLIKSVSSEIESVQEIRVVMDALNCSLKTLELNQQELKEDQEQLKEEHLLIKDIQG 1085
[Close]
BLAST of EMLSAG00000011260 vs. C. finmarchicus
Match: gi|592904846|gb|GAXK01053529.1| (TSA: Calanus finmarchicus comp1550491_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 2.679e+0
Identity = 41/168 (24.40%), Postives = 73/168 (43.45%), Query Frame = 0 
Query:   18 DSLDQYAVLKILN-----VRELKPRMKEIEFDIRNDGSCFGQKDWFDSFYSVIFRFHEELPTNIKATAHDCLLNAGDQLLQ-----RVDSI-LNEQ--DPEDLDEKSKDNCNQFLEYLEDHIHDINA--------HCNPYTFSLPIEEL---ESQLNAESKKLQDLEG 161
            +S D  AVL +++      ++   +  EI   IRN+ + F +  W DS+Y   F+  E +   +        L   DQ+ Q     R+D + L E+  DP D+     D C + ++ +   I  +          +C+  T  L  +EL   + QL  E   ++D++G
Sbjct:  189 ESFDSSAVLNVMSNASCFSKKENNQAAEIRRIIRNEWAHFNESTWSDSYYLKCFQLMENMVEMMPKPEDVKNLFDKDQIKQKLYKWRIDGLKLMERNVDP-DIISTVLDECRKLIKSVSSEIESVQEIRVVMDALNCSLKTLELNQQELKEDQEQLKEEHLLIKDIQG 689
[Close]
BLAST of EMLSAG00000011260 vs. C. finmarchicus
Match: gi|592904847|gb|GAXK01053528.1| (TSA: Calanus finmarchicus comp1550491_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 2.826e+0
Identity = 41/168 (24.40%), Postives = 73/168 (43.45%), Query Frame = 0 
Query:   18 DSLDQYAVLKILN-----VRELKPRMKEIEFDIRNDGSCFGQKDWFDSFYSVIFRFHEELPTNIKATAHDCLLNAGDQLLQ-----RVDSI-LNEQ--DPEDLDEKSKDNCNQFLEYLEDHIHDINA--------HCNPYTFSLPIEEL---ESQLNAESKKLQDLEG 161
            +S D  AVL +++      ++   +  EI   IRN+ + F +  W DS+Y   F+  E +   +        L   DQ+ Q     R+D + L E+  DP D+     D C + ++ +   I  +          +C+  T  L  +EL   + QL  E   ++D++G
Sbjct:  279 ESFDSSAVLNVMSNASCFSKKENNQAAEIRRIIRNEWAHFNESTWSDSYYLKCFQLMENMVEMMPKPEDVKNLFDKDQIKQKLYKWRIDGLKLMERNVDP-DIISTVLDECRKLIKSVSSEIESVQEIRVVMDALNCSLKTLELNQQELKEDQEQLKEEHLLIKDIQG 779
[Close]
BLAST of EMLSAG00000011260 vs. C. finmarchicus
Match: gi|592904843|gb|GAXK01053532.1| (TSA: Calanus finmarchicus comp1550491_c0_seq10 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 5.848e+0
Identity = 17/60 (28.33%), Postives = 30/60 (50.00%), Query Frame = 0 
Query:   18 DSLDQYAVLKILN-----VRELKPRMKEIEFDIRNDGSCFGQKDWFDSFYSVIFRFHEEL 72
            +S D  AVL +++      ++   +  EI   IRN+ + F +  W DS+Y   F+  E +
Sbjct:  233 ESFDSSAVLNVMSNASCFSKKENNQAAEIRRIIRNEWAHFNESTWSDSYYLKCFQLMENM 412
[Close]
BLAST of EMLSAG00000011260 vs. C. finmarchicus
Match: gi|592913396|gb|GAXK01044979.1| (TSA: Calanus finmarchicus comp3309831_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 9.204e+0
Identity = 16/31 (51.61%), Postives = 19/31 (61.29%), Query Frame = 0 
Query:   90 QLLQRVD-SILNEQDPEDLDEKSKDNCNQFL 119
            +L QR   SI N Q   D+D +SK  CNQFL
Sbjct: 1344 RLAQRSPLSIFNYQSVSDMDLRSKQKCNQFL 1436
[Close]
BLAST of EMLSAG00000011260 vs. L. salmonis peptides
Match: EMLSAP00000011260 (pep:novel supercontig:LSalAtl2s:LSalAtl2s770:45592:47649:1 gene:EMLSAG00000011260 transcript:EMLSAT00000011260 description:"maker-LSalAtl2s770-snap-gene-0.9")

HSP 1 Score: 340.887 bits (873), Expect = 1.106e-120
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 
Query:    1 MTINFVIPMEREDLLKADSLDQYAVLKILNVRELKPRMKEIEFDIRNDGSCFGQKDWFDSFYSVIFRFHEELPTNIKATAHDCLLNAGDQLLQRVDSILNEQDPEDLDEKSKDNCNQFLEYLEDHIHDINAHCNPYTFSLPIEELESQLNAESKKLQDLEGLIDKY 166
            MTINFVIPMEREDLLKADSLDQYAVLKILNVRELKPRMKEIEFDIRNDGSCFGQKDWFDSFYSVIFRFHEELPTNIKATAHDCLLNAGDQLLQRVDSILNEQDPEDLDEKSKDNCNQFLEYLEDHIHDINAHCNPYTFSLPIEELESQLNAESKKLQDLEGLIDKY
Sbjct:    1 MTINFVIPMEREDLLKADSLDQYAVLKILNVRELKPRMKEIEFDIRNDGSCFGQKDWFDSFYSVIFRFHEELPTNIKATAHDCLLNAGDQLLQRVDSILNEQDPEDLDEKSKDNCNQFLEYLEDHIHDINAHCNPYTFSLPIEELESQLNAESKKLQDLEGLIDKY 166
[Close]
BLAST of EMLSAG00000011260 vs. L. salmonis peptides
Match: EMLSAP00000009347 (pep:novel supercontig:LSalAtl2s:LSalAtl2s598:263887:269069:-1 gene:EMLSAG00000009347 transcript:EMLSAT00000009347 description:"maker-LSalAtl2s598-snap-gene-2.30")

HSP 1 Score: 145.976 bits (367), Expect = 3.681e-40
Identity = 65/67 (97.01%), Postives = 65/67 (97.01%), Query Frame = 0 
Query:   38 MKEIEFDIRNDGSCFGQKDWFDSFYSVIFRFHEELPTNIKATAHDCLLNAGDQLLQRVDSILNEQDP 104
            MKEIEFDIRNDGSCFG KDWFDSFYSVIFRFHEELPTNIKAT HDCLLNAGDQLLQRVDSILNEQDP
Sbjct:    1 MKEIEFDIRNDGSCFGHKDWFDSFYSVIFRFHEELPTNIKATTHDCLLNAGDQLLQRVDSILNEQDP 67

HSP 2 Score: 70.4774 bits (171), Expect = 1.803e-14
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 0 
Query:  132 HCNPYTFSLPIEELESQLNAESKKLQDLEGLIDK 165
             CNPYTFSLPIEELESQLNAESKKLQDLEGLIDK
Sbjct:  359 QCNPYTFSLPIEELESQLNAESKKLQDLEGLIDK 392

HSP 3 Score: 59.6918 bits (143), Expect = 6.532e-11
Identity = 34/82 (41.46%), Postives = 46/82 (56.10%), Query Frame = 0 
Query:   60 SFYSVIFRFHEELPTNIKATAHDCLLNA-GDQLLQRVDSILNEQDPEDLDEKSKDNCNQFLEYLEDHIHDINAHCNPYTFSL 140
            S+   +F   E+LP  ++ +    +++  GD  +            +DLDEKSKDN NQFLEYLEDHIHDINAH      S+
Sbjct:  243 SYSLFLFELTEKLPEYVRPSLSLLIVHLDGDSYMM-----------QDLDEKSKDNRNQFLEYLEDHIHDINAHVRSSVLSI 313
[Close]
BLAST of EMLSAG00000011260 vs. nr
Match: gi|156365935|ref|XP_001626897.1| (predicted protein [Nematostella vectensis] >gi|156213790|gb|EDO34797.1| predicted protein, partial [Nematostella vectensis])

HSP 1 Score: 66.6254 bits (161), Expect = 7.540e-10
Identity = 39/122 (31.97%), Postives = 71/122 (58.20%), Query Frame = 0 
Query:    1 MTINFVIPMEREDLLKADSLDQYAVLKILNVRELKPRMKEIEFDIRNDGSCFGQKDWFDSFYSVIFRFHEELPTNIKATAHDCLLNAGDQLLQRVDSILNEQDPEDLDEKSKDNCNQFLEYL 122
            M ++FVIP+ ++DLL ++S   YAV ++++ R L P++ +   D+R DG C   ++ FD F+S+I  F  ++ ++++  A   LLNA  QL   +  I+ + D +    K+  N  + + YL
Sbjct:    1 MDVDFVIPLSKDDLLSSES-GAYAVDEVISARSLPPKLADCYIDLRTDGPCSILRN-FDVFFSLIRHF-TDVDSSVREEAWQVLLNALSQLSSNIQPIIEQGDADTETRKTHLNTLKMICYL 119
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011260 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 6
Match NameE-valueIdentityDescription
-7.140e-629.69symbol:NCAPD2 "Condensin complex subunit 1" specie... [more]
-1.387e-529.51symbol:NCAPD2 "Condensin complex subunit 1" specie... [more]
-1.715e-425.00symbol:NCAPD2 "Condensin complex subunit 1" specie... [more]
-3.783e-426.61symbol:Ncapd2 "non-SMC condensin I complex, subuni... [more]
-6.543e-432.86symbol:ncapd2 "Condensin complex subunit 1" specie... [more]
-8.964e-425.81symbol:NCAPD2 "Condensin complex subunit 1" specie... [more]
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BLAST of EMLSAG00000011260 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 9
Match NameE-valueIdentityDescription
gi|592776638|gb|GAXK01177930.1|1.927e-927.50TSA: Calanus finmarchicus comp14068_c2_seq1 transc... [more]
gi|592831792|gb|GAXK01125752.1|7.444e-130.77TSA: Calanus finmarchicus comp310113_c0_seq1 trans... [more]
gi|592927590|gb|GAXK01030877.1|1.078e+030.00TSA: Calanus finmarchicus comp116749_c1_seq1 trans... [more]
gi|592904852|gb|GAXK01053523.1|2.456e+024.40TSA: Calanus finmarchicus comp1550491_c0_seq1 tran... [more]
gi|592904849|gb|GAXK01053526.1|2.457e+024.40TSA: Calanus finmarchicus comp1550491_c0_seq4 tran... [more]
gi|592904846|gb|GAXK01053529.1|2.679e+024.40TSA: Calanus finmarchicus comp1550491_c0_seq7 tran... [more]
gi|592904847|gb|GAXK01053528.1|2.826e+024.40TSA: Calanus finmarchicus comp1550491_c0_seq6 tran... [more]
gi|592904843|gb|GAXK01053532.1|5.848e+028.33TSA: Calanus finmarchicus comp1550491_c0_seq10 tra... [more]
gi|592913396|gb|GAXK01044979.1|9.204e+051.61TSA: Calanus finmarchicus comp3309831_c0_seq1 tran... [more]
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BLAST of EMLSAG00000011260 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000112601.106e-120100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s770:45592... [more]
EMLSAP000000093473.681e-4097.01pep:novel supercontig:LSalAtl2s:LSalAtl2s598:26388... [more]
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BLAST of EMLSAG00000011260 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011260 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011260 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|156365935|ref|XP_001626897.1|7.540e-1031.97predicted protein [Nematostella vectensis] >gi|156... [more]
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BLAST of EMLSAG00000011260 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s770supercontigLSalAtl2s770:45592..47649 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s770-snap-gene-0.9
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011260 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011260EMLSAT00000011260-707107Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s770:45592..47649+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011260-694026 ID=EMLSAG00000011260-694026|Name=EMLSAG00000011260|organism=Lepeophtheirus salmonis|type=gene|length=2058bp|location=Sequence derived from alignment at LSalAtl2s770:45592..47649+ (Lepeophtheirus salmonis)
CTATTATACGACTTATGTTTATCGGGAGGGAAAGAAAGAAAGAAAAAAAG
AAAGAAAGAAAAAAGAAAGAGAGAAAAAAGGTGGCAAAATCCGAAATAAG
TGAGTGAAGTTTGGAATCCTCCAAAATGACGATCAACTTCGTTATACCAA
TGGAGAGGGAGGATCTCCTCAAAGCGGACTCTTTGGACCAATATGCTGTT
CTAAAAATTTTGAATGTCCGTGAACTGAAGCCCCGAATGAAGGTTTGTTT
ATCCGAATTCGTAAAGGAGTTTGACGTTTCATTTTTTGCATTAATAATCA
TAGGAAATTGAGTTCGATATTCGTAACGATGGATCTTGCTTTGGACAAAA
GGATTGGTTTGACTCATTCTATTCCGTCATTTTCCGGTTTCACGAGGAGC
TGCCCACGAATATCAAAGCAACAGCCCATGATTGTCTTCTCAACGCGGGA
GATCAACTGCTTCAACGGGTGGACTCCATCCTCAATGAACAAGATCCAGG
TGCCTCAACCTTTCTTCTAGAGCCTCTTCACTTTAGAGTTCATACTTTCC
ATTCACTTAATCCACTCATTCTTGAACTTAATTTCAATCAGAGTAATAGG
GATTTTCAGTACCTACAACACATGAAATATTTAATAAAACTATGTATTAG
AAGGATTTATATCCTTTTATTTGCTGGTCCCATTTTGACATCTAATAGTT
GAGTGTTGTCCTTAATACTAATCAAATAGGGATTTTATTTTTATAAAACT
TGATAATTAGTGCCTCTAAAATGCTTGACGTCCCTTGAAAACGCTTTCTT
CTCCACTCTTGTTAATAGCTTTTAATTAATCCTATTTTTTTTTCTTCAGA
TCCGGAAGCGAAATTAGAATGTCTCAATGATATGAAAATGATTGTTTATC
TTATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNATATTGGGCATACTTGGAGATATTGTAATTAAAGTTCT
ATCTAAAGAAGATCTCGATGAAAAAAGTAAAGACAATTGCAATCAATTCT
TAGAATATTTGGAGGATCATATTCATGACATTAACGCCCACGTAAGATCG
TCAGTACTTTCAATATGGTGTAAATTATGTGTGGCTAAGTCGATACCATT
GGGTCGKCAATATAGTGTACTAAAGTTAACTATGGGTCGGCTAMTCGACA
AAWCTTCGAATGTTCGTAAACAAGCTGTTCAACTTCTTACTTCCTTGCTT
CAGTGTAATCCTTATACGTTTTCCCTTCCTATTGAAGAACTTGAGTCTCA
ACTAAATGCCGAATCTAAGAAATTGCAAGATTTGGAAGGGTTGATAGACA
AATATTAG
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