EMLSAG00000011300, EMLSAG00000011300-694066 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592869989|gb|GAXK01087573.1| (TSA: Calanus finmarchicus comp5872727_c0_seq1 transcribed RNA sequence) HSP 1 Score: 76.6406 bits (187), Expect = 1.246e-16 Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 0 Query: 82 PSSM-ESGIAEVSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWILERV 141 PS + +S E+ IL +L +Y+FYRL VW TLNFSEA+IQGPQGWD L++WILERV Sbjct: 108 PSCIVDSNTDEIVVAILIILLVIYTFYRLLHVWAYTLNFSEASIQGPQGWDLLMHWILERV 290
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592953838|gb|GAXK01004715.1| (TSA: Calanus finmarchicus comp2127430_c0_seq1 transcribed RNA sequence) HSP 1 Score: 69.707 bits (169), Expect = 6.450e-14 Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0 Query: 92 VSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWILERVQVKR 145 V V L +LWL+S YRL VW NTLNF +A + P+GWDFL+ W+ +RV KR Sbjct: 112 VVIVCLVAMLWLFSIYRLSRVWANTLNFDQAQLHSPKGWDFLLQWLTQRVIQKR 273
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592783838|gb|GAXK01170730.1| (TSA: Calanus finmarchicus comp2746405_c0_seq2 transcribed RNA sequence) HSP 1 Score: 68.1662 bits (165), Expect = 1.120e-12 Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 0 Query: 63 NQPFQYYTGPRNHGAKYFGPSSMESGIAEVSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWILERVQVKR 145 N+ + Y+T P + SS GI V F+++ +LWLYSFYRL+ VW TLNF +QG +GWDFLV W+L + K+ Sbjct: 639 NRRWYYHTAPDVDDTIH---SSYTGGII-VGFLVV--LLWLYSFYRLWMVWAYTLNFDGTIVQGQKGWDFLVTWVLHSINAKK 869
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592783839|gb|GAXK01170729.1| (TSA: Calanus finmarchicus comp2746405_c0_seq1 transcribed RNA sequence) HSP 1 Score: 68.1662 bits (165), Expect = 1.648e-12 Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 0 Query: 68 YYTGPRNHGAKYFGPSSMESG-IAEVSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWILERVQVKR 145 Y+T P+ SS+E+G + L +LWLYSFYRL+ VW TLNF +QG +GWDFLV W+L + K+ Sbjct: 639 YHTAPKVE-------SSVETGYTGGIIVGFLVVLLWLYSFYRLWMVWAYTLNFDGTIVQGQKGWDFLVTWVLHSINAKK 854
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592838349|gb|GAXK01119195.1| (TSA: Calanus finmarchicus comp3887824_c0_seq1 transcribed RNA sequence) HSP 1 Score: 64.6994 bits (156), Expect = 2.967e-12 Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 0 Query: 70 TGPRNHGAKYF---GPSSMESGIAEVSFVI-LAFILWLYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWIL 138 T P N Y P+ ++ + + + V L +L +Y+F+RLY VW NTLNFSEA++QGPQGWD L+ +L Sbjct: 179 TRPLNCTPIYLVQPDPACVKDTLTDEAIVTFLLVLLVIYTFHRLYYVWVNTLNFSEASLQGPQGWDLLMRLLL 397
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592803157|gb|GAXK01151411.1| (TSA: Calanus finmarchicus comp227101_c0_seq1 transcribed RNA sequence) HSP 1 Score: 51.2174 bits (121), Expect = 3.308e-7 Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0 Query: 103 LYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWILERVQV 143 LYS +RL+ VW TLNF Q P+GWDFLV WIL+ V++ Sbjct: 24 LYSLHRLWVVWAETLNFD--GTQSPKGWDFLVQWILDVVKL 140
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592920227|gb|GAXK01038148.1| (TSA: Calanus finmarchicus comp6709438_c0_seq1 transcribed RNA sequence) HSP 1 Score: 41.2022 bits (95), Expect = 5.209e-4 Identity = 17/40 (42.50%), Postives = 27/40 (67.50%), Query Frame = 0 Query: 85 MESGIAEVSFVILAFILWLYSFYRLYSVWQNTLNFSEANI 124 ++S + ++ IL IL Y+FYR+Y VW TLNF+E ++ Sbjct: 2 VDSYLGDLVVTILILILVGYTFYRMYRVWAKTLNFTEVSV 121
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592898535|gb|GAXK01059840.1| (TSA: Calanus finmarchicus comp4334465_c0_seq1 transcribed RNA sequence) HSP 1 Score: 40.817 bits (94), Expect = 1.720e-3 Identity = 16/44 (36.36%), Postives = 27/44 (61.36%), Query Frame = 0 Query: 88 GIAEVSFVILAFIL--WLYSFYRLYSVWQNTLNFSEANIQGPQG 129 G+ +++ FI+ W YS YR + +W++ LNFS ++Q QG Sbjct: 4 GMKLKEMIVITFIMGIWFYSLYRFFKIWRDILNFSVESLQRSQG 135
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592929577|gb|GAXK01028968.1| (TSA: Calanus finmarchicus comp5235092_c0_seq1 transcribed RNA sequence) HSP 1 Score: 37.3502 bits (85), Expect = 1.621e-2 Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 0 Query: 102 WLYSFYRLYSVWQNTLNFSEANIQGPQ---GWDFLVNWILERVQ 142 W YS YR + VW+N LNFS ++Q Q G D L N I E ++ Sbjct: 149 WFYSLYRFFKVWRNILNFSVESLQRSQAQAGPDKLWNIITEYIR 280
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592810466|gb|GAXK01144102.1| (TSA: Calanus finmarchicus comp3214966_c0_seq1 transcribed RNA sequence) HSP 1 Score: 37.7354 bits (86), Expect = 1.859e-2 Identity = 18/58 (31.03%), Postives = 31/58 (53.45%), Query Frame = 0 Query: 91 EVSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGP----QGWDFLVNWILERVQVK 144 EV +I +LWL+S +R + +W N LN+ + I P +G + V W + ++ K Sbjct: 479 EVVIIIFMLLLWLFSIHRFFKIWSNILNY-QPIIHRPNTAAEGVETFVLWAMTSIRRK 649
BLAST of EMLSAG00000011300 vs. L. salmonis peptides
Match: EMLSAP00000011300 (pep:novel supercontig:LSalAtl2s:LSalAtl2s779:208823:209781:1 gene:EMLSAG00000011300 transcript:EMLSAT00000011300 description:"augustus_masked-LSalAtl2s779-processed-gene-1.0") HSP 1 Score: 481.1 bits (1237), Expect = 7.653e-174 Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0 Query: 1 MNSTFIRKKNLNEISYFNPKTREFYYHSVPEANINEHLKEGFIFLPRKPPPTPESGPEGPSLNQPFQYYTGPRNHGAKYFGPSSMESGIAEVSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWILERVQVKRIKSISKSKKYESYNMEEGINIELDHIPSGHPPTPVEIDGAFSNIISESMHEIHHSYPSVLNKIQRADSGSLCQSDDYKFESNYYNQSIV 234 MNSTFIRKKNLNEISYFNPKTREFYYHSVPEANINEHLKEGFIFLPRKPPPTPESGPEGPSLNQPFQYYTGPRNHGAKYFGPSSMESGIAEVSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWILERVQVKRIKSISKSKKYESYNMEEGINIELDHIPSGHPPTPVEIDGAFSNIISESMHEIHHSYPSVLNKIQRADSGSLCQSDDYKFESNYYNQSIV Sbjct: 1 MNSTFIRKKNLNEISYFNPKTREFYYHSVPEANINEHLKEGFIFLPRKPPPTPESGPEGPSLNQPFQYYTGPRNHGAKYFGPSSMESGIAEVSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWILERVQVKRIKSISKSKKYESYNMEEGINIELDHIPSGHPPTPVEIDGAFSNIISESMHEIHHSYPSVLNKIQRADSGSLCQSDDYKFESNYYNQSIV 234
BLAST of EMLSAG00000011300 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold133_size323035-snap-gene-1.12 (protein:Tk02240 transcript:maker-scaffold133_size323035-snap-gene-1.12-mRNA-1 annotation:"hypothetical protein JAAARDRAFT_120563") HSP 1 Score: 59.6918 bits (143), Expect = 1.790e-11 Identity = 37/129 (28.68%), Postives = 60/129 (46.51%), Query Frame = 0 Query: 84 SMESGIAEVSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGPQ----GWDFLVNWILERVQVKRIKSISKSKKYESYNMEEGINIELDHIPSGHPP---TPVEIDGAFSNIISESMHEIHHSYPSVL 205 S + G E+ V L F+LW Y+ R+Y VW LNFS+ N Q GWD + W LE ++ ++ S+ + +EE +E I G +E + I+S+ ++I H S++ Sbjct: 28 SYQMGPMEIFLVFLLFVLWFYALRRMYRVWTTILNFSDLNTDSFQRNSKGWDAFIQWALEHIRGRKQSGESRRQSNSKGGLEED-KVEDGSIAGGSAAIEGVEMETNPRGDPILSQRDNKIRHHSHSIV 155 The following BLAST results are available for this feature:
BLAST of EMLSAG00000011300 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 12
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BLAST of EMLSAG00000011300 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000011300 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000011300 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000011300 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000011300 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s779:208823..209781+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000011300-694066 ID=EMLSAG00000011300-694066|Name=EMLSAG00000011300|organism=Lepeophtheirus salmonis|type=gene|length=959bp|location=Sequence derived from alignment at LSalAtl2s779:208823..209781+ (Lepeophtheirus salmonis)back to top Add to Basket
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