EMLSAG00000011300, EMLSAG00000011300-694066 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011300
Unique NameEMLSAG00000011300-694066
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592869989|gb|GAXK01087573.1| (TSA: Calanus finmarchicus comp5872727_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 76.6406 bits (187), Expect = 1.246e-16
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 0
Query:   82 PSSM-ESGIAEVSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWILERV 141
            PS + +S   E+   IL  +L +Y+FYRL  VW  TLNFSEA+IQGPQGWD L++WILERV
Sbjct:  108 PSCIVDSNTDEIVVAILIILLVIYTFYRLLHVWAYTLNFSEASIQGPQGWDLLMHWILERV 290          
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592953838|gb|GAXK01004715.1| (TSA: Calanus finmarchicus comp2127430_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 69.707 bits (169), Expect = 6.450e-14
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0
Query:   92 VSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWILERVQVKR 145
            V  V L  +LWL+S YRL  VW NTLNF +A +  P+GWDFL+ W+ +RV  KR
Sbjct:  112 VVIVCLVAMLWLFSIYRLSRVWANTLNFDQAQLHSPKGWDFLLQWLTQRVIQKR 273          
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592783838|gb|GAXK01170730.1| (TSA: Calanus finmarchicus comp2746405_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 68.1662 bits (165), Expect = 1.120e-12
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 0
Query:   63 NQPFQYYTGPRNHGAKYFGPSSMESGIAEVSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWILERVQVKR 145
            N+ + Y+T P      +   SS   GI  V F+++  +LWLYSFYRL+ VW  TLNF    +QG +GWDFLV W+L  +  K+
Sbjct:  639 NRRWYYHTAPDVDDTIH---SSYTGGII-VGFLVV--LLWLYSFYRLWMVWAYTLNFDGTIVQGQKGWDFLVTWVLHSINAKK 869          
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592783839|gb|GAXK01170729.1| (TSA: Calanus finmarchicus comp2746405_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 68.1662 bits (165), Expect = 1.648e-12
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 0
Query:   68 YYTGPRNHGAKYFGPSSMESG-IAEVSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWILERVQVKR 145
            Y+T P+         SS+E+G    +    L  +LWLYSFYRL+ VW  TLNF    +QG +GWDFLV W+L  +  K+
Sbjct:  639 YHTAPKVE-------SSVETGYTGGIIVGFLVVLLWLYSFYRLWMVWAYTLNFDGTIVQGQKGWDFLVTWVLHSINAKK 854          
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592838349|gb|GAXK01119195.1| (TSA: Calanus finmarchicus comp3887824_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 64.6994 bits (156), Expect = 2.967e-12
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 0
Query:   70 TGPRNHGAKYF---GPSSMESGIAEVSFVI-LAFILWLYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWIL 138
            T P N    Y     P+ ++  + + + V  L  +L +Y+F+RLY VW NTLNFSEA++QGPQGWD L+  +L
Sbjct:  179 TRPLNCTPIYLVQPDPACVKDTLTDEAIVTFLLVLLVIYTFHRLYYVWVNTLNFSEASLQGPQGWDLLMRLLL 397          
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592803157|gb|GAXK01151411.1| (TSA: Calanus finmarchicus comp227101_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 51.2174 bits (121), Expect = 3.308e-7
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0
Query:  103 LYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWILERVQV 143
            LYS +RL+ VW  TLNF     Q P+GWDFLV WIL+ V++
Sbjct:   24 LYSLHRLWVVWAETLNFD--GTQSPKGWDFLVQWILDVVKL 140          
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592920227|gb|GAXK01038148.1| (TSA: Calanus finmarchicus comp6709438_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 5.209e-4
Identity = 17/40 (42.50%), Postives = 27/40 (67.50%), Query Frame = 0
Query:   85 MESGIAEVSFVILAFILWLYSFYRLYSVWQNTLNFSEANI 124
            ++S + ++   IL  IL  Y+FYR+Y VW  TLNF+E ++
Sbjct:    2 VDSYLGDLVVTILILILVGYTFYRMYRVWAKTLNFTEVSV 121          
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592898535|gb|GAXK01059840.1| (TSA: Calanus finmarchicus comp4334465_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.817 bits (94), Expect = 1.720e-3
Identity = 16/44 (36.36%), Postives = 27/44 (61.36%), Query Frame = 0
Query:   88 GIAEVSFVILAFIL--WLYSFYRLYSVWQNTLNFSEANIQGPQG 129
            G+     +++ FI+  W YS YR + +W++ LNFS  ++Q  QG
Sbjct:    4 GMKLKEMIVITFIMGIWFYSLYRFFKIWRDILNFSVESLQRSQG 135          
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592929577|gb|GAXK01028968.1| (TSA: Calanus finmarchicus comp5235092_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 37.3502 bits (85), Expect = 1.621e-2
Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 0
Query:  102 WLYSFYRLYSVWQNTLNFSEANIQGPQ---GWDFLVNWILERVQ 142
            W YS YR + VW+N LNFS  ++Q  Q   G D L N I E ++
Sbjct:  149 WFYSLYRFFKVWRNILNFSVESLQRSQAQAGPDKLWNIITEYIR 280          
BLAST of EMLSAG00000011300 vs. C. finmarchicus
Match: gi|592810466|gb|GAXK01144102.1| (TSA: Calanus finmarchicus comp3214966_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 37.7354 bits (86), Expect = 1.859e-2
Identity = 18/58 (31.03%), Postives = 31/58 (53.45%), Query Frame = 0
Query:   91 EVSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGP----QGWDFLVNWILERVQVK 144
            EV  +I   +LWL+S +R + +W N LN+ +  I  P    +G +  V W +  ++ K
Sbjct:  479 EVVIIIFMLLLWLFSIHRFFKIWSNILNY-QPIIHRPNTAAEGVETFVLWAMTSIRRK 649          
BLAST of EMLSAG00000011300 vs. L. salmonis peptides
Match: EMLSAP00000011300 (pep:novel supercontig:LSalAtl2s:LSalAtl2s779:208823:209781:1 gene:EMLSAG00000011300 transcript:EMLSAT00000011300 description:"augustus_masked-LSalAtl2s779-processed-gene-1.0")

HSP 1 Score: 481.1 bits (1237), Expect = 7.653e-174
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0
Query:    1 MNSTFIRKKNLNEISYFNPKTREFYYHSVPEANINEHLKEGFIFLPRKPPPTPESGPEGPSLNQPFQYYTGPRNHGAKYFGPSSMESGIAEVSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWILERVQVKRIKSISKSKKYESYNMEEGINIELDHIPSGHPPTPVEIDGAFSNIISESMHEIHHSYPSVLNKIQRADSGSLCQSDDYKFESNYYNQSIV 234
            MNSTFIRKKNLNEISYFNPKTREFYYHSVPEANINEHLKEGFIFLPRKPPPTPESGPEGPSLNQPFQYYTGPRNHGAKYFGPSSMESGIAEVSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWILERVQVKRIKSISKSKKYESYNMEEGINIELDHIPSGHPPTPVEIDGAFSNIISESMHEIHHSYPSVLNKIQRADSGSLCQSDDYKFESNYYNQSIV
Sbjct:    1 MNSTFIRKKNLNEISYFNPKTREFYYHSVPEANINEHLKEGFIFLPRKPPPTPESGPEGPSLNQPFQYYTGPRNHGAKYFGPSSMESGIAEVSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGPQGWDFLVNWILERVQVKRIKSISKSKKYESYNMEEGINIELDHIPSGHPPTPVEIDGAFSNIISESMHEIHHSYPSVLNKIQRADSGSLCQSDDYKFESNYYNQSIV 234          
BLAST of EMLSAG00000011300 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold133_size323035-snap-gene-1.12 (protein:Tk02240 transcript:maker-scaffold133_size323035-snap-gene-1.12-mRNA-1 annotation:"hypothetical protein JAAARDRAFT_120563")

HSP 1 Score: 59.6918 bits (143), Expect = 1.790e-11
Identity = 37/129 (28.68%), Postives = 60/129 (46.51%), Query Frame = 0
Query:   84 SMESGIAEVSFVILAFILWLYSFYRLYSVWQNTLNFSEANIQGPQ----GWDFLVNWILERVQVKRIKSISKSKKYESYNMEEGINIELDHIPSGHPP---TPVEIDGAFSNIISESMHEIHHSYPSVL 205
            S + G  E+  V L F+LW Y+  R+Y VW   LNFS+ N    Q    GWD  + W LE ++ ++    S+ +      +EE   +E   I  G        +E +     I+S+  ++I H   S++
Sbjct:   28 SYQMGPMEIFLVFLLFVLWFYALRRMYRVWTTILNFSDLNTDSFQRNSKGWDAFIQWALEHIRGRKQSGESRRQSNSKGGLEED-KVEDGSIAGGSAAIEGVEMETNPRGDPILSQRDNKIRHHSHSIV 155          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011300 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011300 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 12
Match NameE-valueIdentityDescription
gi|592869989|gb|GAXK01087573.1|1.246e-1659.02TSA: Calanus finmarchicus comp5872727_c0_seq1 tran... [more]
gi|592953838|gb|GAXK01004715.1|6.450e-1453.70TSA: Calanus finmarchicus comp2127430_c0_seq1 tran... [more]
gi|592783838|gb|GAXK01170730.1|1.120e-1243.37TSA: Calanus finmarchicus comp2746405_c0_seq2 tran... [more]
gi|592783839|gb|GAXK01170729.1|1.648e-1243.04TSA: Calanus finmarchicus comp2746405_c0_seq1 tran... [more]
gi|592838349|gb|GAXK01119195.1|2.967e-1243.84TSA: Calanus finmarchicus comp3887824_c0_seq1 tran... [more]
gi|592803157|gb|GAXK01151411.1|3.308e-756.10TSA: Calanus finmarchicus comp227101_c0_seq1 trans... [more]
gi|592920227|gb|GAXK01038148.1|5.209e-442.50TSA: Calanus finmarchicus comp6709438_c0_seq1 tran... [more]
gi|592898535|gb|GAXK01059840.1|1.720e-336.36TSA: Calanus finmarchicus comp4334465_c0_seq1 tran... [more]
gi|592929577|gb|GAXK01028968.1|1.621e-245.45TSA: Calanus finmarchicus comp5235092_c0_seq1 tran... [more]
gi|592810466|gb|GAXK01144102.1|1.859e-231.03TSA: Calanus finmarchicus comp3214966_c0_seq1 tran... [more]

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BLAST of EMLSAG00000011300 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000113007.653e-174100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s779:20882... [more]
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BLAST of EMLSAG00000011300 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011300 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011300 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011300 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold133_size323035-snap-gene-1.121.790e-1128.68protein:Tk02240 transcript:maker-scaffold133_size3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s779supercontigLSalAtl2s779:208823..209781 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s779-processed-gene-1.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011300 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011300EMLSAT00000011300-707147Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s779:208823..209781+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011300-694066 ID=EMLSAG00000011300-694066|Name=EMLSAG00000011300|organism=Lepeophtheirus salmonis|type=gene|length=959bp|location=Sequence derived from alignment at LSalAtl2s779:208823..209781+ (Lepeophtheirus salmonis)
ATGAACTCTACTTTTATAAGAAAAAAAAATCTGAATGAGGTATAGAGAAA TAGTAATACATTATCCACTAAATTTTTGTTTATAACTACTATAAATATAC AGGCACATTATTTATGCCTCTTGGACACTATAATGAGTTAAGTTTTATGA AAGGGGATTAAAGCTGATTTTGGAGCAAAATATATTTAAGTGATTACTCA TCAAAAAATAGAAGAGATAATAGACTCTATCACTAATTATCTAGTAAAAC ATTGCTTAACCTATAAACTCTTTATAATATATTTTATTAACAGATTTCAT ATTTTAACCCCAAAACACGAGAATTTTACTATCATTCAGTTCCAGAAGCA AACATCAACGAGCATTTAAAAGAAGGCTTCATATTTCTTCCTCGAAAGCC TCCTCCAACTCCGGAAAGTGGACCTGAAGGCCCTTCGCTAAATCAACCCT TTCAATACTACACTGGACCAAGAAATCACGGAGCAAAATATTTTGGACCG TCTTCCATGGAATCCGGAATTGCAGAAGTATCCTTTGTAATTCTCGCATT CATACTCTGGCTCTACTCTTTTTACAGACTATATTCCGTATGGCAAAATA CTCTTAATTTTTCTGAGGCTAATATTCAGGGGCCTCAAGGCTGGGACTTC CTCGTCAACTGGATTCTAGAAAGGGTTCAGGTGAAACGCATCAAATCTAT ATCTAAGAGCAAGAAATATGAGTCATACAATATGGAGGAAGGAATAAATA TTGAGCTAGATCATATTCCGTCTGGACATCCTCCTACCCCAGTCGAGATC GATGGGGCCTTTAGTAACATAATAAGTGAATCAATGCATGAAATTCATCA CTCCTATCCTTCCGTCCTTAATAAAATCCAACGAGCGGACTCTGGATCTC TTTGCCAATCAGATGACTATAAATTTGAGAGTAATTATTATAATCAGTCC ATTGTATGA
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