EMLSAG00000011519, EMLSAG00000011519-694285 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011519
Unique NameEMLSAG00000011519-694285
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592923318|gb|GAXK01035097.1| (TSA: Calanus finmarchicus comp110292_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 6.666e-2
Identity = 19/66 (28.79%), Postives = 33/66 (50.00%), Query Frame = 0
Query:    1 MACMEGSGTKPKSGHSGKLS--SEENIDLLQELFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDS 64
            MA       +   GH  +LS  +E     L+E+FP +    L   ++ +PG  +E L+E +L ++S
Sbjct:   28 MAPQNRKRPREDDGHEQELSGEAEAAYRTLREVFPTKSWRYLRDKVVNWPGGSVEQLVEQLLTSES 225          
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592923319|gb|GAXK01035096.1| (TSA: Calanus finmarchicus comp110292_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 7.660e-2
Identity = 19/66 (28.79%), Postives = 33/66 (50.00%), Query Frame = 0
Query:    1 MACMEGSGTKPKSGHSGKLS--SEENIDLLQELFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDS 64
            MA       +   GH  +LS  +E     L+E+FP +    L   ++ +PG  +E L+E +L ++S
Sbjct:   28 MAPQNRKRPREDDGHEQELSGEAEAAYRTLREVFPTKSWRYLRDKVVNWPGGSVEQLVEQLLTSES 225          
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592949690|gb|GAXK01008863.1| (TSA: Calanus finmarchicus comp939685_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 1.029e-1
Identity = 13/43 (30.23%), Postives = 20/43 (46.51%), Query Frame = 0
Query:   55 LIEIILGNDSQVKCEVCWEEYFLENT--VSCVNSHFFCRDCAR 95
            L  +    + +  C++C EEY  E    + C N H FC  C +
Sbjct: 1287 LCTVRFSGEGETSCDICMEEYSQERKPLLVCTNGHNFCSSCTK 1415          
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592949689|gb|GAXK01008864.1| (TSA: Calanus finmarchicus comp939685_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.512e-1
Identity = 13/43 (30.23%), Postives = 20/43 (46.51%), Query Frame = 0
Query:   55 LIEIILGNDSQVKCEVCWEEYFLENT--VSCVNSHFFCRDCAR 95
            L  +    + +  C++C EEY  E    + C N H FC  C +
Sbjct:  139 LCTVRFSGEGETSCDICMEEYSQERKPLLVCTNGHNFCSSCTK 267          
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592888756|gb|GAXK01069619.1| (TSA: Calanus finmarchicus comp313699_c2_seq3 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 2.352e-1
Identity = 23/77 (29.87%), Postives = 33/77 (42.86%), Query Frame = 0
Query:   17 GKLSSEENIDLLQELFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDC 93
            GK+S  E + L +E +  R     +  L K    H   L ++      +++C VC E    E    C N HF CR C
Sbjct:  678 GKVSEMEKLSL-KEKWERRKFQRENRKLTKLSANHKSFLNKL----RGKIQCPVCQEVPRAETVPVCSNGHFVCRKC 893          
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592879321|gb|GAXK01078580.1| (TSA: Calanus finmarchicus comp209484_c4_seq9 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 2.665e-1
Identity = 13/29 (44.83%), Postives = 18/29 (62.07%), Query Frame = 0
Query:   66 VKCEVCWEEYFLE-NTVSCVNSHFFCRDC 93
            V+CE C++   LE + V C   H +CRDC
Sbjct: 1021 VECECCYDPDCLEEDMVRCGGGHLYCRDC 1107          
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592879320|gb|GAXK01078581.1| (TSA: Calanus finmarchicus comp209484_c4_seq10 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 2.808e-1
Identity = 13/29 (44.83%), Postives = 18/29 (62.07%), Query Frame = 0
Query:   66 VKCEVCWEEYFLE-NTVSCVNSHFFCRDC 93
            V+CE C++   LE + V C   H +CRDC
Sbjct:  795 VECECCYDPDCLEEDMVRCGGGHLYCRDC 881          
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592879326|gb|GAXK01078575.1| (TSA: Calanus finmarchicus comp209484_c4_seq4 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 2.953e-1
Identity = 13/29 (44.83%), Postives = 18/29 (62.07%), Query Frame = 0
Query:   66 VKCEVCWEEYFLE-NTVSCVNSHFFCRDC 93
            V+CE C++   LE + V C   H +CRDC
Sbjct: 1406 VECECCYDPDCLEEDMVRCGGGHLYCRDC 1492          
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592879323|gb|GAXK01078578.1| (TSA: Calanus finmarchicus comp209484_c4_seq7 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 3.127e-1
Identity = 13/29 (44.83%), Postives = 18/29 (62.07%), Query Frame = 0
Query:   66 VKCEVCWEEYFLE-NTVSCVNSHFFCRDC 93
            V+CE C++   LE + V C   H +CRDC
Sbjct: 1247 VECECCYDPDCLEEDMVRCGGGHLYCRDC 1333          
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592852937|gb|GAXK01104607.1| (TSA: Calanus finmarchicus comp157290_c1_seq11 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.763e-1
Identity = 15/38 (39.47%), Postives = 22/38 (57.89%), Query Frame = 0
Query:    9 TKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLK 46
            +KPK     KLS +E   + +E FPD D  +L ++ LK
Sbjct: 3614 SKPKLSARRKLSKDEFESVWEEHFPDEDEKLLKTFFLK 3727          
BLAST of EMLSAG00000011519 vs. L. salmonis peptides
Match: EMLSAP00000011519 (pep:novel supercontig:LSalAtl2s:LSalAtl2s799:201458:201745:-1 gene:EMLSAG00000011519 transcript:EMLSAT00000011519 description:"augustus_masked-LSalAtl2s799-processed-gene-2.1")

HSP 1 Score: 198.364 bits (503), Expect = 8.180e-67
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
Query:    1 MACMEGSGTKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDCAR 95
            MACMEGSGTKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDCAR
Sbjct:    1 MACMEGSGTKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDCAR 95          
BLAST of EMLSAG00000011519 vs. L. salmonis peptides
Match: EMLSAP00000000189 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1029:145437:146295:-1 gene:EMLSAG00000000189 transcript:EMLSAT00000000189 description:"maker-LSalAtl2s1029-snap-gene-1.49")

HSP 1 Score: 64.6994 bits (156), Expect = 2.761e-14
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 0
Query:   31 LFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDC 93
            +FP++D   L+S L  YPGK++EGLI+ IL    QV+C +CWE+ ++E+ +SC   H  CR C
Sbjct:    1 MFPEKDEFELTSLLKSYPGKYMEGLIDKIL-QGVQVRCLICWEDLYMEDVISCDGDHPVCRSC 62          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011519 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011519 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592923318|gb|GAXK01035097.1|6.666e-228.79TSA: Calanus finmarchicus comp110292_c2_seq2 trans... [more]
gi|592923319|gb|GAXK01035096.1|7.660e-228.79TSA: Calanus finmarchicus comp110292_c2_seq1 trans... [more]
gi|592949690|gb|GAXK01008863.1|1.029e-130.23TSA: Calanus finmarchicus comp939685_c0_seq1 trans... [more]
gi|592949689|gb|GAXK01008864.1|1.512e-130.23TSA: Calanus finmarchicus comp939685_c0_seq2 trans... [more]
gi|592888756|gb|GAXK01069619.1|2.352e-129.87TSA: Calanus finmarchicus comp313699_c2_seq3 trans... [more]
gi|592879321|gb|GAXK01078580.1|2.665e-144.83TSA: Calanus finmarchicus comp209484_c4_seq9 trans... [more]
gi|592879320|gb|GAXK01078581.1|2.808e-144.83TSA: Calanus finmarchicus comp209484_c4_seq10 tran... [more]
gi|592879326|gb|GAXK01078575.1|2.953e-144.83TSA: Calanus finmarchicus comp209484_c4_seq4 trans... [more]
gi|592879323|gb|GAXK01078578.1|3.127e-144.83TSA: Calanus finmarchicus comp209484_c4_seq7 trans... [more]
gi|592852937|gb|GAXK01104607.1|3.763e-139.47TSA: Calanus finmarchicus comp157290_c1_seq11 tran... [more]

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BLAST of EMLSAG00000011519 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000115198.180e-67100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s799:20145... [more]
EMLSAP000000001892.761e-1446.03pep:novel supercontig:LSalAtl2s:LSalAtl2s1029:1454... [more]
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BLAST of EMLSAG00000011519 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011519 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011519 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011519 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s799supercontigLSalAtl2s799:201458..201745 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s799-processed-gene-2.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011519 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011519EMLSAT00000011519-707366Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s799:201458..201745-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011519-694285 ID=EMLSAG00000011519-694285|Name=EMLSAG00000011519|organism=Lepeophtheirus salmonis|type=gene|length=288bp|location=Sequence derived from alignment at LSalAtl2s799:201458..201745- (Lepeophtheirus salmonis)
ATGGCTTGCATGGAGGGGAGTGGTACGAAACCCAAAAGTGGTCACTCTGG AAAACTCTCGTCAGAGGAAAATATTGACCTATTACAGGAATTATTTCCAG ATCGAGATGTGAACATTTTATCATCTTATCTTTTGAAATATCCGGGGAAA CACATTGAAGGTTTAATTGAAATTATTCTCGGGAATGATTCACAAGTCAA GTGTGAGGTTTGCTGGGAAGAATATTTTCTCGAAAACACTGTGTCATGTG TTAATAGCCACTTTTTCTGCCGAGATTGTGCTAGGTAA
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