short-chain dehydrogenase, snap_masked-scaffold7064_size3409-processed-gene-0.0 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of short-chain dehydrogenase vs. L. salmonis genes
Match: EMLSAG00000002347 (supercontig:LSalAtl2s:LSalAtl2s1446:53993:55015:-1 gene:EMLSAG00000002347 transcript:EMLSAT00000002347 description:"maker-LSalAtl2s1446-augustus-gene-0.15") HSP 1 Score: 164.081 bits (414), Expect = 3.695e-51 Identity = 91/184 (49.46%), Postives = 121/184 (65.76%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNN-DPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIY-GEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMPP 182
G L ++N AG+ + T + + F VI VN +G+FN++RL AA +AK +P D D RG I+N AS AA++GQ GQAAYSASKG +VGMTLPIARDL+++GIRVNTIAPGL DTP+ G E+ + +L ++V P RLG +E A +A V N MNGE +R+DG +RM P
Sbjct: 77 FGYLSAVVNCAGIAVGFVTYNHTKATSHGLEDFAKVINVNTIGTFNVIRLAAAQIAKNEP-DADNQRGVIINTASVAAYEGQRGQAAYSASKGAVVGMTLPIARDLASIGIRVNTIAPGLFDTPLLKGLPEK---VRKYLAKTVPNPSRLGDPDEFAHLAQHMVLNSMMNGEVVRIDGALRMQP 256
BLAST of short-chain dehydrogenase vs. L. salmonis genes
Match: EMLSAG00000009319 (supercontig:LSalAtl2s:LSalAtl2s595:50362:51363:-1 gene:EMLSAG00000009319 transcript:EMLSAT00000009319 description:"maker-LSalAtl2s595-augustus-gene-0.32") HSP 1 Score: 54.6842 bits (130), Expect = 1.042e-9 Identity = 46/185 (24.86%), Postives = 82/185 (44.32%), Query Frame = 0
Query: 4 LRVLINSAGLGMAARTVDRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMAS-AAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTP-----IYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTN--PYMNGETIRVDGGIRM 180
+ +L N AG +D + D + F I V+ +M +C A + + ++ G+I+NM+S ++ G + AY +K ++G T +A DL IRVN I PG +DTP + + + + + +RLG E+A + + Y G ++DGG+ +
Sbjct: 76 IDILFNCAGYVHHGSILDCDEDSWKRS---FEINVD-----SMYYMCKAIVP---SMIENKKGGSIINMSSICSSIKGLPNRFAYGTTKAAVIGFTKSLACDLVKHNIRVNCICPGTVDTPSLRGRVNNTPNPEKTYTDFINRQPM--QRLGTSTEIASFVLTLAEDNGAYCTGGDYKIDGGLSI 247
BLAST of short-chain dehydrogenase vs. L. salmonis genes
Match: EMLSAG00000010112 (supercontig:LSalAtl2s:LSalAtl2s668:190059:194758:1 gene:EMLSAG00000010112 transcript:EMLSAT00000010112 description:"augustus_masked-LSalAtl2s668-processed-gene-1.1") HSP 1 Score: 51.9878 bits (123), Expect = 1.036e-8 Identity = 50/186 (26.88%), Postives = 89/186 (47.85%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNN-DPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEG----EQSDAFKAHLGQSVLFPKRLGHGEE----LAFMAIDTVTNPYMNGETIRVDGG 177
G L +L+N+AG+ ++R + + +++D V+ +N+ F L + KT +G IVN++S G AY+ SK + T IA +L+ +RVN++ PG+I + ++ EQ + F H ++ R G+ +E +AF A + + + G T+ VDGG
Sbjct: 83 FGRLDILVNNAGI------LERGSIENTSLESYDRVMNINVRSVFQTTSLATPHLIKT--------KGNIVNVSSVNGIRSFPGVLAYNMSKSALDQFTKCIALELAPKNVRVNSVNPGVIISNLHYRAGLTDEQYEEFLEH-SKNTHALGRPGNPDEVAKCIAFFA--SSESSFCTGVTMPVDGG 251
BLAST of short-chain dehydrogenase vs. L. salmonis genes
Match: EMLSAG00000009346 (supercontig:LSalAtl2s:LSalAtl2s598:262505:268264:1 gene:EMLSAG00000009346 transcript:EMLSAT00000009346 description:"maker-LSalAtl2s598-augustus-gene-2.22") HSP 1 Score: 46.2098 bits (108), Expect = 3.549e-7 Identity = 33/115 (28.70%), Postives = 58/115 (50.43%), Query Frame = 0
Query: 68 AIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEEL----AFMAIDTVTNPYMNGETIRVDGGI 178
+I+ ++S A + YS SK ++ ++ ++ +L GIRVN +APG++ T +D+ A + + + KR +E+ AF+A + YM GETI GG+
Sbjct: 26 SIIFISSIAGYVPMPMLGPYSISKTALISLSKTLSNELGPQGIRVNCVAPGIVKTKFASALTDNDSI-AKMALANIPLKRFAVPDEISGIVAFLASKDAS--YMTGETIVASGGM 137
BLAST of short-chain dehydrogenase vs. L. salmonis genes
Match: EMLSAG00000010107 (supercontig:LSalAtl2s:LSalAtl2s667:334082:336289:1 gene:EMLSAG00000010107 transcript:EMLSAT00000010107 description:"maker-LSalAtl2s667-augustus-gene-2.21") HSP 1 Score: 47.7506 bits (112), Expect = 3.833e-7 Identity = 41/126 (32.54%), Postives = 58/126 (46.03%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDL----SAMGIRVNTIAPGLIDT 122
+G + +LIN+AG V + D + + +I NLLG +LR M D G +V MAS A G Y+ASK GI GM + +L A GI + T++P L+DT
Sbjct: 175 VGDIDILINNAGTLCCKPFVQHDFDQIER-----IISTNLLGQLWVLRAILPQMIARDT-------GYVVAMASFAGHAGVPNMVPYTASKFGIKGMMEALFIELRQGNRAHGIHLMTVSPFLVDT 288
BLAST of short-chain dehydrogenase vs. L. salmonis genes
Match: EMLSAG00000008813 (supercontig:LSalAtl2s:LSalAtl2s549:453537:455976:-1 gene:EMLSAG00000008813 transcript:EMLSAT00000008813 description:"maker-LSalAtl2s549-augustus-gene-4.8") HSP 1 Score: 47.7506 bits (112), Expect = 4.363e-7 Identity = 54/190 (28.42%), Postives = 90/190 (47.37%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSV---LFPKRLGHGEELAFMAIDTVTNP---YMNGETIRVDGG--IRMPP 182
G L L+N+ G + D M K ++ VI+ NL G++ M R + K + G+IVN+ + + G A A++ + +T +A + S GIRVN +APG P++ + SD + L S+ L KR G +E++ + + +P ++NG T+ VDGG + PP
Sbjct: 245 FGTLDFLVNNGGGQFPSLAAD-----MSLKGWNAVIETNLNGTYLMSREAYNQVFKK-------SGGSIVNIIAQTS-RGFPMMAHTGAARAAVENLTKTLALEWSENGIRVNCVAPG----PVFSK-TASDNYSYDLFSSLTPKLPTKRCGTPDEVS-STVCFLLSPGASFVNGATLVVDGGSVLYSPP 415
BLAST of short-chain dehydrogenase vs. SwissProt
Match: gi|618798166|sp|P9WGQ6.1|Y1144_MYCTO (RecName: Full=Uncharacterized oxidoreductase MT1177 >gi|618798167|sp|P9WGQ7.1|Y1144_MYCTU RecName: Full=Uncharacterized oxidoreductase Rv1144) HSP 1 Score: 185.652 bits (470), Expect = 2.855e-58 Identity = 98/183 (53.55%), Postives = 127/183 (69.40%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMPPK 183
+GP+RV++N AG G A R + R+ P F ++ +NL+G+FN+LRL A +AKT+PI ++ RG I+N AS AAFDGQIGQAAYSASKGG+VGMTLPIARDL++ IRV TIAPGL DTP+ KA LGQ V P RLG+ +E + + + NP +NGE IR+DG IRM P+
Sbjct: 73 LGPVRVVVNCAGTGNAIRVLSRDG-VFPLAAFRKIVDINLVGTFNVLRLGAERIAKTEPIGEE--RGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIARDLASKLIRVVTIAPGLFDTPLLASLPAE--AKASLGQQVPHPSRLGNPDEYGALVLHIIENPMLNGEVIRLDGAIRMAPR 250
BLAST of short-chain dehydrogenase vs. SwissProt
Match: gi|7387724|sp|O70351.3|HCD2_RAT (RecName: Full=3-hydroxyacyl-CoA dehydrogenase type-2; AltName: Full=17-beta-hydroxysteroid dehydrogenase 10; Short=17-beta-HSD 10; AltName: Full=3-hydroxy-2-methylbutyryl-CoA dehydrogenase; AltName: Full=3-hydroxyacyl-CoA dehydrogenase type II; AltName: Full=Endoplasmic reticulum-associated amyloid beta-peptide-binding protein; AltName: Full=Mitochondrial ribonuclease P protein 2; Short=Mitochondrial RNase P protein 2; AltName: Full=Type II HADH) HSP 1 Score: 173.711 bits (439), Expect = 1.807e-53 Identity = 93/183 (50.82%), Postives = 119/183 (65.03%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTV-DRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMPP 182
G + V +N AG+ +A +T ++ N + F VI VNL+G+FN++RL A M + +P D G RG I+N AS AAF+GQ+GQAAYSASKGGIVGMTLPIARDL+ +GIRV TIAPGL TP+ D + L V FP RLG E A + + NP++NGE IR+DG IRM P
Sbjct: 82 FGRIDVAVNCAGIAVAIKTYHEKKNQVHTLEDFQRVINVNLIGTFNVIRLVAGVMGQNEP-DQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVVTIAPGLFATPLL--TTLPDKVRNFLASQVPFPSRLGDPAEYAHLVQMVIENPFLNGEVIRLDGAIRMQP 261
BLAST of short-chain dehydrogenase vs. SwissProt
Match: gi|3183024|sp|O02691.3|HCD2_BOVIN (RecName: Full=3-hydroxyacyl-CoA dehydrogenase type-2; AltName: Full=17-beta-hydroxysteroid dehydrogenase 10; Short=17-beta-HSD 10; AltName: Full=3-hydroxy-2-methylbutyryl-CoA dehydrogenase; AltName: Full=3-hydroxyacyl-CoA dehydrogenase type II; AltName: Full=Mitochondrial ribonuclease P protein 2; Short=Mitochondrial RNase P protein 2; AltName: Full=Type II HADH) HSP 1 Score: 170.629 bits (431), Expect = 3.000e-52 Identity = 92/183 (50.27%), Postives = 119/183 (65.03%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVD-RNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMPP 182
G + V +N AG+ +A++T + + + + F VI VNL+G+FN++RL A M + +P D G RG I+N AS AAF+GQ+GQAAYSASKGGIVGMTLPIARDL+ MGIRV TIAPGL TP+ D + L V FP RLG E A + + N ++NGE IR+DG IRM P
Sbjct: 82 FGRVDVAVNCAGIAVASKTYNLKKSQAHTLEDFQRVINVNLIGTFNVIRLVAGEMGQNEP-DQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPMGIRVMTIAPGLFGTPLL--TTLPDKVRNFLASQVPFPSRLGDPAEYAHLVQAIIENSFLNGEVIRLDGAIRMQP 261
BLAST of short-chain dehydrogenase vs. SwissProt
Match: gi|13124274|sp|O18404.1|HCD2_DROME (RecName: Full=3-hydroxyacyl-CoA dehydrogenase type-2; AltName: Full=17-beta-hydroxysteroid dehydrogenase 10; Short=17-beta-HSD 10; AltName: Full=3-hydroxy-2-methylbutyryl-CoA dehydrogenase; AltName: Full=3-hydroxyacyl-CoA dehydrogenase type II; AltName: Full=Mitochondrial ribonuclease P protein 2; Short=Mitochondrial RNase P protein 2; AltName: Full=Scully protein; AltName: Full=Type II HADH) HSP 1 Score: 167.548 bits (423), Expect = 4.020e-51 Identity = 89/183 (48.63%), Postives = 116/183 (63.39%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNNDPMPQ-KTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMPP 182
G L + +N AG A +T + N + + + F VI +N +G+FN++RL A M +P + DG RG IVN AS AAFDGQIGQAAYSASK +VGMTLPIARDLS GIR+ TIAPGL +TP+ + + L +S+ FP+RLG E A + NP +NGE IR+DG +RM P
Sbjct: 76 FGRLDLTVNCAGTATAVKTFNFNKNVAHRLEDFQRVININTVGTFNVIRLSAGLMGANEP-NQDGQRGVIVNTASVAAFDGQIGQAAYSASKAAVVGMTLPIARDLSTQGIRICTIAPGLFNTPML--AALPEKVRTFLAKSIPFPQRLGEPSEYAHLVQAIYENPLLNGEVIRIDGALRMMP 255
BLAST of short-chain dehydrogenase vs. SwissProt
Match: gi|3183025|sp|O08756.4|HCD2_MOUSE (RecName: Full=3-hydroxyacyl-CoA dehydrogenase type-2; AltName: Full=17-beta-hydroxysteroid dehydrogenase 10; Short=17-beta-HSD 10; AltName: Full=3-hydroxy-2-methylbutyryl-CoA dehydrogenase; AltName: Full=3-hydroxyacyl-CoA dehydrogenase type II; AltName: Full=Endoplasmic reticulum-associated amyloid beta-peptide-binding protein; AltName: Full=Mitochondrial ribonuclease P protein 2; Short=Mitochondrial RNase P protein 2; AltName: Full=Type II HADH) HSP 1 Score: 167.548 bits (423), Expect = 4.462e-51 Identity = 91/183 (49.73%), Postives = 116/183 (63.39%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTV-DRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMPP 182
G + V +N AG+ +A +T + N + F VI VNL+G+FN++RL A M + +P D G RG I+N AS AAF+GQ+GQAAYSASKGGI GMTLPIARDL+ GIRV TIAPGL TP+ + + L V FP RLG E A + + NP++NGE IR+DG IRM P
Sbjct: 82 FGRIDVAVNCAGIAVAIKTYHQKKNKIHTLEDFQRVINVNLIGTFNVIRLVAGEMGQNEP-DQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIDGMTLPIARDLAPTGIRVVTIAPGLFATPLL--TTLPEKVRNFLASQVPFPSRLGDPAEYAHLVQTIIENPFLNGEVIRLDGAIRMQP 261
BLAST of short-chain dehydrogenase vs. SwissProt
Match: gi|2492759|sp|Q99714.3|HCD2_HUMAN (RecName: Full=3-hydroxyacyl-CoA dehydrogenase type-2; AltName: Full=17-beta-hydroxysteroid dehydrogenase 10; Short=17-beta-HSD 10; AltName: Full=2-methyl-3-hydroxybutyryl-CoA dehydrogenase; Short=MHBD; AltName: Full=3-hydroxy-2-methylbutyryl-CoA dehydrogenase; AltName: Full=3-hydroxyacyl-CoA dehydrogenase type II; AltName: Full=Endoplasmic reticulum-associated amyloid beta-peptide-binding protein; AltName: Full=Mitochondrial ribonuclease P protein 2; Short=Mitochondrial RNase P protein 2; AltName: Full=Short chain dehydrogenase/reductase family 5C member 1; AltName: Full=Short-chain type dehydrogenase/reductase XH98G2; AltName: Full=Type II HADH) HSP 1 Score: 167.162 bits (422), Expect = 7.756e-51 Identity = 90/183 (49.18%), Postives = 118/183 (64.48%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVD-RNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMPP 182
G + V +N AG+ +A++T + + + F V+ VNL+G+FN++RL A M + +P D G RG I+N AS AAF+GQ+GQAAYSASKGGIVGMTLPIARDL+ +GIRV TIAPGL TP+ + L V FP RLG E A + + NP++NGE IR+DG IRM P
Sbjct: 82 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEP-DQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLL--TSLPEKVCNFLASQVPFPSRLGDPAEYAHLVQAIIENPFLNGEVIRLDGAIRMQP 261
BLAST of short-chain dehydrogenase vs. SwissProt
Match: gi|54040090|sp|P66782.1|Y1385_MYCBO (RecName: Full=Uncharacterized oxidoreductase Mb1385 >gi|618798290|sp|P9WGR8.1|Y1350_MYCTO RecName: Full=Uncharacterized oxidoreductase MT1393 >gi|618798291|sp|P9WGR9.1|Y1350_MYCTU RecName: Full=Uncharacterized oxidoreductase Rv1350) HSP 1 Score: 96.6709 bits (239), Expect = 9.334e-24 Identity = 69/178 (38.76%), Postives = 98/178 (55.06%), Query Frame = 0
Query: 2 GPLRVLINSAGLGMAARTVDRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTN--PYMNGETIRVDGG 177
G L V++N+AG+ T D M ++ FD VI V+L G++N RL AA M + RGAIVNM+S + G +GQ YSA+K GIVGMT A++L+ +GIRVN IAPGLI + + E + L + + R G E+A +A+ ++ YM G + V GG
Sbjct: 82 GGLDVMVNNAGI-----TRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERK-------RGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMT-EAMPQRIWDQKLAEVPM--GRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGG 244
BLAST of short-chain dehydrogenase vs. SwissProt
Match: gi|6919838|sp|Q9X248.1|FABG_THEMA (RecName: Full=3-oxoacyl-[acyl-carrier-protein] reductase FabG; AltName: Full=3-ketoacyl-acyl carrier protein reductase; AltName: Full=Beta-Ketoacyl-acyl carrier protein reductase; AltName: Full=Beta-ketoacyl-ACP reductase) HSP 1 Score: 91.2781 bits (225), Expect = 1.166e-21 Identity = 66/181 (36.46%), Postives = 97/181 (53.59%), Query Frame = 0
Query: 2 GPLRVLINSAGLGMAARTVDRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELA----FMAIDTVTNPYMNGETIRVDGGI 178
G + VL+N+AG+ A V M ++ +D VI VNL G FN+ ++ M K G+IVN++S G GQ Y+ASK G++GMT A++L+ IRVN +APG I+TP+ E A + L + L R G EE+A F+A D + Y+ G+ I +DGG+
Sbjct: 81 GRIDVLVNNAGITRDALLVR-----MKEEDWDAVINVNLKGVFNVTQMVVPYMIKQR-------NGSIVNVSSVVGIYGNPGQTNYAASKAGVIGMTKTWAKELAGRNIRVNAVAPGFIETPMT-EKLPEKARETALSRIPL--GRFGKPEEVAQVILFLASD--ESSYVTGQVIGIDGGL 244
BLAST of short-chain dehydrogenase vs. SwissProt
Match: gi|182705245|sp|Q91VT4.2|CBR4_MOUSE (RecName: Full=Carbonyl reductase family member 4; AltName: Full=3-ketoacyl-[acyl-carrier-protein] reductase beta subunit; Short=KAR beta subunit; AltName: Full=3-oxoacyl-[acyl-carrier-protein] reductase; AltName: Full=Quinone reductase CBR4) HSP 1 Score: 90.1225 bits (222), Expect = 2.792e-21 Identity = 62/185 (33.51%), Postives = 102/185 (55.14%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNNDPMPQKTFDFV--IKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAH--LGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMP 181
+GP+ L+N+AG ++R++ + KT D + + NLLGS + C AAM + G G+IVN+ S G +GQ+AYSA+KGG+VG + +A++++ IRVN +APG I T + ++ + FK + LG R G E+A + + +PY+ G + VDGG+++
Sbjct: 74 LGPVNFLVNAAG-------INRDSLLVRTKTEDMISQLHTNLLGS---MLTCKAAM---KTMIQQG--GSIVNVGSIIGLKGNVGQSAYSATKGGLVGFSRSLAKEVARKKIRVNVVAPGFIRTDMTRHLKE-EHFKKNIPLG-------RFGETLEVAHAVVFLLESPYITGHVLIVDGGLQLT 235
BLAST of short-chain dehydrogenase vs. SwissProt
Match: gi|81894655|sp|Q7TS56.1|CBR4_RAT (RecName: Full=Carbonyl reductase family member 4; AltName: Full=3-ketoacyl-[acyl-carrier-protein] reductase beta subunit; Short=KAR beta subunit; AltName: Full=3-oxoacyl-[acyl-carrier-protein] reductase; AltName: Full=Quinone reductase CBR4) HSP 1 Score: 89.3521 bits (220), Expect = 4.877e-21 Identity = 61/185 (32.97%), Postives = 102/185 (55.14%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNNDPMPQKTFDFV--IKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAH--LGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMP 181
+GP+ L+N+AG ++R++ + KT D + + NLLG+ + C AAM + G G+IVN+ S G +GQAAYSA+KGG++G + +A++++ IRVN +APG I T + ++ + FK + LG R G E+A + + +PY+ G + VDGG+++
Sbjct: 74 LGPVNFLVNAAG-------INRDSLLVRTKTEDMLSQLHTNLLGT---MLTCRAAM---RTMIQQG--GSIVNVGSIIGLKGNVGQAAYSATKGGLIGFSRSLAKEVARKKIRVNVVAPGFIHTDMTKHLKE-EHFKKNIPLG-------RFGEALEVAHAVVFLLESPYITGHVLIVDGGLQLT 235
BLAST of short-chain dehydrogenase vs. nr
Match: gi|745855536|gb|KIE52800.1| (3-hydroxy-2-methylbutyryl-CoA dehydrogenase [marine actinobacterium MedAcidi-G3]) HSP 1 Score: 316.62 bits (810), Expect = 2.571e-107 Identity = 149/183 (81.42%), Postives = 167/183 (91.26%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMPPK 183
MGPLR L+NSAGLG AART+DRNN P F+FVIKVNL+G++NML AAAMA+TDP+D+DG+RGAIVNMASAAAFDGQIGQAAYSASKGG+VGMTLPIARDLSA GIR+NT+APGLIDTPIYGEGEQSD FKAHLGQSVLFPKRLG+GEELAFM ++ +TNPYMNGETIR DGGIRMPP+
Sbjct: 77 MGPLRALVNSAGLGRAARTIDRNNVPADLGQFEFVIKVNLIGTYNMLAQSAAAMAQTDPVDEDGSRGAIVNMASAAAFDGQIGQAAYSASKGGVVGMTLPIARDLSATGIRINTVAPGLIDTPIYGEGEQSDQFKAHLGQSVLFPKRLGYGEELAFMVMECITNPYMNGETIRCDGGIRMPPR 259
BLAST of short-chain dehydrogenase vs. nr
Match: gi|1200520474|gb|OUW33642.1| (3-hydroxyacyl-CoA dehydrogenase [Actinobacteria bacterium TMED172]) HSP 1 Score: 315.464 bits (807), Expect = 7.355e-107 Identity = 151/183 (82.51%), Postives = 166/183 (90.71%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMPPK 183
MGPLR L+NSAGLG AART+DRNN P F+FVIKVNL+GS+NML AAAMA+T+P+D+DG+RGAIVNMASAAAFDGQIGQAAYSASKGG+VGMTLPIARDLSA GIRVNTIAPGLIDTPIYGEGEQSD FKAHLGQSVLFPKRLG GEELAFM ++ +TNPYMNGETIR DGGIRMPP+
Sbjct: 77 MGPLRALVNSAGLGRAARTIDRNNVPADLSQFEFVIKVNLIGSYNMLAQSAAAMAQTEPVDEDGSRGAIVNMASAAAFDGQIGQAAYSASKGGVVGMTLPIARDLSATGIRVNTIAPGLIDTPIYGEGEQSDQFKAHLGQSVLFPKRLGSGEELAFMVMECLTNPYMNGETIRCDGGIRMPPR 259
BLAST of short-chain dehydrogenase vs. nr
Match: gi|1251831012|gb|PDH67997.1| (3-hydroxyacyl-CoA dehydrogenase [Acidimicrobiales bacterium MED-G01]) HSP 1 Score: 314.694 bits (805), Expect = 1.654e-106 Identity = 148/183 (80.87%), Postives = 166/183 (90.71%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMPPK 183
MGPLR L+NSAGLG AART+DRNN P F+FVIK+NLLG++NML AAAMA+T+P+D DG+RGAIVNMASAAAFDGQIGQAAYSASKGG+VGMTLP+ARDLSA GIRVNTIAPGLIDTPIYGEGEQSD FKAHLG+SVLFPKRLG+GEELAFM ++ +TNPYMNGETIR DGGIRMPP+
Sbjct: 77 MGPLRALVNSAGLGRAARTIDRNNVPADLGQFEFVIKINLLGTYNMLAQSAAAMAQTEPVDQDGSRGAIVNMASAAAFDGQIGQAAYSASKGGVVGMTLPVARDLSATGIRVNTIAPGLIDTPIYGEGEQSDQFKAHLGESVLFPKRLGYGEELAFMVMECITNPYMNGETIRCDGGIRMPPR 259
BLAST of short-chain dehydrogenase vs. nr
Match: gi|1200626614|gb|OUX34846.1| (3-hydroxyacyl-CoA dehydrogenase [Actinobacteria bacterium TMED270]) HSP 1 Score: 310.457 bits (794), Expect = 7.807e-105 Identity = 147/183 (80.33%), Postives = 165/183 (90.16%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMPPK 183
MGPLR L+NSAGLG AART+DRNN P F+FVIKVNL+G++NML AAAMA+TDP+D+DG+RGAIVNMASAAAF GQIGQAAYSASKGG+VGMTLPIARDLSA GIR+NT+APGLIDTPIYGEGEQSD FKA LGQSVLFPKRLG+GEELAFM ++ +TNPYMNGETIR DGGIRMPP+
Sbjct: 77 MGPLRALVNSAGLGRAARTIDRNNVPADLGQFEFVIKVNLIGTYNMLAQSAAAMAQTDPVDEDGSRGAIVNMASAAAFXGQIGQAAYSASKGGVVGMTLPIARDLSATGIRINTVAPGLIDTPIYGEGEQSDQFKAXLGQSVLFPKRLGYGEELAFMVMECITNPYMNGETIRCDGGIRMPPR 259
BLAST of short-chain dehydrogenase vs. nr
Match: gi|918755203|ref|WP_052608069.1| (KR domain-containing protein [Actinobacteria bacterium IMCC26256] >gi|829574627|gb|AKL72921.1| dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like [Actinobacteria bacterium IMCC26256]) HSP 1 Score: 309.686 bits (792), Expect = 1.644e-104 Identity = 150/183 (81.97%), Postives = 162/183 (88.52%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMPPK 183
MGPLRVL+NSAGLG A RT+DRNN+PM QK FDFVIKVNLLGSFNMLRL AAAMAKT+ I +DG RGAIVNMAS AAFDGQ GQA YSASKGGIVGMTLPIARDL+ GIRVNT+APGLIDTPIYG GE S+AFKA+LG+SVLFPKRLG EELAFM ID +TNPYMN E +RVDGGIRMPPK
Sbjct: 77 MGPLRVLVNSAGLGWAGRTIDRNNEPMEQKHFDFVIKVNLLGSFNMLRLSAAAMAKTEAITEDGQRGAIVNMASVAAFDGQTGQACYSASKGGIVGMTLPIARDLAPAGIRVNTVAPGLIDTPIYGVGEASEAFKANLGKSVLFPKRLGSAEELAFMVIDLITNPYMNAEIVRVDGGIRMPPK 259
BLAST of short-chain dehydrogenase vs. nr
Match: gi|1180716043|ref|WP_084201189.1| (KR domain-containing protein [Halioglobus japonicus] >gi|1140135780|gb|AQA20317.1| 3-hydroxyacyl-CoA dehydrogenase [Halioglobus japonicus] >gi|1321672179|gb|PLW88153.1| KR domain-containing protein [Halioglobus japonicus]) HSP 1 Score: 297.745 bits (761), Expect = 8.555e-100 Identity = 140/183 (76.50%), Postives = 162/183 (88.52%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMPPK 183
+GPLR +NSAGLG+ ART+DRNNDPM K F+FVI+VNL+G+FN+L AAAMAKT+P+D DGARGAIVN+AS AAFDGQIGQA+YSASKGG+VGMTLPIARDLS+ GIRVNT+APGLIDTPIYGEGE ++AFKA LG SVLFPKRLG GEELAF ++ +TNPYMN E IR+DGGIRMPPK
Sbjct: 77 LGPLRACVNSAGLGLPARTIDRNNDPMDLKGFEFVIQVNLIGTFNVLSRAAAAMAKTEPMDADGARGAIVNLASCAAFDGQIGQASYSASKGGVVGMTLPIARDLSSAGIRVNTVAPGLIDTPIYGEGEHAEAFKAKLGASVLFPKRLGVGEELAFTVMECITNPYMNAEVIRMDGGIRMPPK 259
BLAST of short-chain dehydrogenase vs. nr
Match: gi|1200461833|gb|OUV77289.1| (3-hydroxyacyl-CoA dehydrogenase [Acidimicrobiaceae bacterium TMED130]) HSP 1 Score: 297.36 bits (760), Expect = 9.943e-100 Identity = 141/183 (77.05%), Postives = 158/183 (86.34%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMPPK 183
MGPLR L+N AG+G A+RTVDRN DPMP F+FVI+VNL+G+FN +RL AA+MAKTDPID DG RGAIVNMAS AAFDGQ GQ AYSASKGG+VGMTLPIARDL +GIR+NTIAPGLIDTPIYGEGE SD FKAHLGQSVLFPKRLG+ ELA M + +TN YMNGETIRVDGG+R+PPK
Sbjct: 74 MGPLRALVNGAGIGSASRTVDRNGDPMPLAQFEFVIRVNLIGTFNCIRLGAASMAKTDPIDGDGQRGAIVNMASVAAFDGQTGQNAYSASKGGVVGMTLPIARDLVPLGIRINTIAPGLIDTPIYGEGEASDQFKAHLGQSVLFPKRLGYASELASMVTECITNDYMNGETIRVDGGVRLPPK 256
BLAST of short-chain dehydrogenase vs. nr
Match: gi|1053752901|ref|WP_066051570.1| (KR domain-containing protein [Halioglobus sp. HI00S01] >gi|1024415465|gb|KZX59129.1| 3-hydroxy-2-methylbutyryl-CoA dehydrogenase [Halioglobus sp. HI00S01]) HSP 1 Score: 297.745 bits (761), Expect = 1.008e-99 Identity = 140/183 (76.50%), Postives = 162/183 (88.52%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMPPK 183
+GPLR +NSAGLG+ ART+DRNNDPM K F+FVI+VNL+G+FN+L AAAMAKT+P+D DGARGAIVN+AS AAFDGQIGQA+YSASKGG+VGMTLPIARDLS+ GIRVNT+APGLIDTPIYGEGE ++AFKA LG SVLFPKRLG GEELAF ++ +TNPYMN E IR+DGGIRMPPK
Sbjct: 77 LGPLRACVNSAGLGLPARTIDRNNDPMDLKGFEFVIQVNLIGTFNVLSRAAAAMAKTEPMDADGARGAIVNLASCAAFDGQIGQASYSASKGGVVGMTLPIARDLSSAGIRVNTVAPGLIDTPIYGEGEHAEAFKAKLGASVLFPKRLGVGEELAFTVMECITNPYMNAEVIRMDGGIRMPPK 259
BLAST of short-chain dehydrogenase vs. nr
Match: gi|745852643|gb|KIE49972.1| (3-hydroxy-2-methylbutyryl-CoA dehydrogenase [marine actinobacterium MedAcidi-G2A]) HSP 1 Score: 294.664 bits (753), Expect = 1.288e-98 Identity = 140/183 (76.50%), Postives = 156/183 (85.25%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMPPK 183
MGPLR L+N AG+G A+RTVDRN +PMP F+FVI+VNL+G+FN RL AA MAKT+PIDDDG RGAIVNMAS AAFDGQ GQ AYSASKGG+VGMTLPIARDL +GIRVNTIAPGLIDTPIYGEGE S+ FKAHLGQSVLFPKRLG ELA M + +TN YMNGETIRVDGG+R+PPK
Sbjct: 74 MGPLRALVNGAGIGSASRTVDRNGEPMPLAQFEFVIRVNLIGTFNCTRLGAATMAKTEPIDDDGQRGAIVNMASVAAFDGQTGQNAYSASKGGVVGMTLPIARDLVPLGIRVNTIAPGLIDTPIYGEGEASEQFKAHLGQSVLFPKRLGSASELASMVTECITNDYMNGETIRVDGGVRLPPK 256
BLAST of short-chain dehydrogenase vs. nr
Match: gi|1200244177|gb|OUT67609.1| (3-hydroxyacyl-CoA dehydrogenase [Cellvibrionales bacterium TMED21]) HSP 1 Score: 293.893 bits (751), Expect = 3.100e-98 Identity = 137/183 (74.86%), Postives = 157/183 (85.79%), Query Frame = 0
Query: 1 MGPLRVLINSAGLGMAARTVDRNNDPMPQKTFDFVIKVNLLGSFNMLRLCAAAMAKTDPIDDDGARGAIVNMASAAAFDGQIGQAAYSASKGGIVGMTLPIARDLSAMGIRVNTIAPGLIDTPIYGEGEQSDAFKAHLGQSVLFPKRLGHGEELAFMAIDTVTNPYMNGETIRVDGGIRMPPK 183
MGPLR +NSAG+G A RTV R+NDP P F+FVI+VNL+G+FNML AA MAK DP+DDDG RGAIVN+ASAAAFDGQIGQ AYSASK G+VGM LPIARDLSA+G+RVNT+APGLIDTPIYGEG +S+AFKAHLG+SVLFPKRLG EELA+ +D +TNPYMN E IR+DGGIRMPPK
Sbjct: 77 MGPLRACVNSAGIGAAGRTVSRDNDPFPLDKFEFVIRVNLIGTFNMLSRAAAQMAKQDPLDDDGGRGAIVNLASAAAFDGQIGQCAYSASKAGVVGMALPIARDLSAVGVRVNTVAPGLIDTPIYGEGPESEAFKAHLGKSVLFPKRLGSSEELAYAVMDCITNPYMNAEVIRLDGGIRMPPK 259 The following BLAST results are available for this feature:
BLAST of short-chain dehydrogenase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 6
BLAST of short-chain dehydrogenase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of short-chain dehydrogenase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold7064_size3409:75..626+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold7064_size3409-processed-gene-0.0 ID=snap_masked-scaffold7064_size3409-processed-gene-0.0|Name=short-chain dehydrogenase|organism=Tigriopus kingsejongensis|type=gene|length=552bp|location=Sequence derived from alignment at scaffold7064_size3409:75..626+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'short-chain dehydrogenase' has the following synonyms
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