laminin subunit beta- partial, maker-scaffold231_size243715-snap-gene-1.45 (gene) Tigriopus kingsejongensis

Overview
Namelaminin subunit beta- partial
Unique Namemaker-scaffold231_size243715-snap-gene-1.45
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of laminin subunit beta- partial vs. L. salmonis genes
Match: EMLSAG00000003955 (supercontig:LSalAtl2s:LSalAtl2s211:994215:1002048:1 gene:EMLSAG00000003955 transcript:EMLSAT00000003955 description:"augustus_masked-LSalAtl2s211-processed-gene-10.7")

HSP 1 Score: 110.923 bits (276), Expect = 9.044e-31
Identity = 62/166 (37.35%), Postives = 100/166 (60.24%), Query Frame = 0 
Query:   27 FRCGILAFFGNDRACRASCWVVGRKTGFCDEEGNCNCNPEDLNVRESIDNLLGGMDVMEYVSLKYREFEEEVSSWSLTKSVKQLVPSRCRLGNGFCEASCHGIGRVTGKCSADFSDCECSPDTVAAEQYALCLDDGVCSLYCQRQGSARGHCKGPTGWECRCYSNQ 192
            FRCG L  +    AC+ +C   G  TG CD +  CNC+ +DL+V + ID++L G+D+ + +S K  EF    SSW + +S+K+              ++C  +GR  G C++D +DC+C  + V+  Q+ALC++D +C + CQR+G ARG C+G  GW+C C +++
Sbjct:   23 FRCGYLGEW----ACKLTCKATGHTTGKCDAKTECNCSEKDLDVSKEIDDILDGIDIRDKISEKVTEFTNYASSWQIEESIKK--------------STCQAVGRRNGVCNSDNTDCDCDDEFVSPRQWALCVEDAICRVDCQRKGYARGKCEGEFGWDCNCITSK 170
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BLAST of laminin subunit beta- partial vs. L. salmonis genes
Match: EMLSAG00000006970 (supercontig:LSalAtl2s:LSalAtl2s396:202568:204244:1 gene:EMLSAG00000006970 transcript:EMLSAT00000006970 description:"maker-LSalAtl2s396-augustus-gene-2.14")

HSP 1 Score: 86.6557 bits (213), Expect = 5.805e-22
Identity = 63/190 (33.16%), Postives = 91/190 (47.89%), Query Frame = 0 
Query:    1 MRSSLFLSVFVALALGFQATPSEAIRFRCGILAFFGNDRACRASCWVVGRKTGFCDEEGNCNCNPEDLNVRESIDNLLGGMDVMEYVSLKYREFEEEVSSWSLTKSVKQLVPSRCRLGNGFCEASCHGIGRVTGKCSADFSDCECSPDTVAAEQYALCLDDGVCSLYCQRQGSARGHCKGPTGWECRCYS 190
            M S +  +VFV  +L      +EA  FRC    FFG D AC A C V+G+ +G C  +G C C+   +++                                  K+ K L+ SRC LG  FC A+C  IGRV G C+  ++DC C+ + ++ ++ ALC  +  C++YCQ  G A G C+   GW C C S
Sbjct:    1 MTSKIICAVFVFASL---VNLNEA-GFRC----FFG-DWACTAGCTVMGQTSGICGHDGKCWCSERRISI----------------------------------KNFKALLXSRCTLGEEFCNATCQSIGRVNGTCA--YNDCSCADELISPDELALCTIESNCNVYCQGSGRAGGECR---GWSCVCTS 142
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BLAST of laminin subunit beta- partial vs. L. salmonis genes
Match: EMLSAG00000009369 (supercontig:LSalAtl2s:LSalAtl2s599:352791:354595:-1 gene:EMLSAG00000009369 transcript:EMLSAT00000009369 description:"maker-LSalAtl2s599-snap-gene-3.41")

HSP 1 Score: 58.151 bits (139), Expect = 4.480e-11
Identity = 51/199 (25.63%), Postives = 87/199 (43.72%), Query Frame = 0 
Query:    1 MRSSLFLSVFVALALGFQATPSEAIRFRCGILAFFG-NDRACRASCWVVGRKTGFC----DEEGNCNCNPEDLNVRESIDNLLGGMDVMEYVSLKYREFEEEVSSWSLTKSVKQLVPSRCRLGNGFCEASCHGIGRVTGKCSADFSDCECSPDTVAAEQYALCLDDGVCSLYCQ-RQGSARGHCKGPTGWECRCYSNQD 193
              +SL +  F+ L++  +   +   R +   L   G  +  C+ +C + G   GFC    D   +C C+ EDL      +  + G DV             E++  S                 GFC+A     GR +G C    ++C C+ + +       C++D VCS++CQ ++  A G C+GP  W+C+CYS ++
Sbjct:    9 FNNSLLVIFFILLSISREGLSTNLKRVKRNDLVRCGLTESVCKWTCRLGGHSGGFCSPDADGGSSCICSEEDL------EKYVCGGDV-----------GPEIAGXSXA---------------GFCQAK----GRQSGNCDLIKNECACTKEYLQLSHIK-CINDEVCSVFCQYKERKANGRCEGPNKWDCKCYSMKE 170
[Close]
BLAST of laminin subunit beta- partial vs. L. salmonis genes
Match: EMLSAG00000009368 (supercontig:LSalAtl2s:LSalAtl2s599:336881:337404:-1 gene:EMLSAG00000009368 transcript:EMLSAT00000009368 description:"snap_masked-LSalAtl2s599-processed-gene-3.11")

HSP 1 Score: 50.8322 bits (120), Expect = 1.533e-8
Identity = 27/69 (39.13%), Postives = 37/69 (53.62%), Query Frame = 0 
Query:  121 FCEASCHGIGRVTGKCSADFSDCECSPDTVAAEQYALCLDDGVCSLYCQ-RQGSARGHCKGPTGWECRC 188
             C   C  IGR TG C  +   CECS +     +  LC+ + VCS++CQ  +G + G C GP  W+C C
Sbjct:   67 MCAGYCQVIGRQTGNCENNV--CECSRERFYLSRDYLCVANEVCSMHCQIVRGGSNGKCSGPNNWDCEC 133
[Close]
BLAST of laminin subunit beta- partial vs. L. salmonis genes
Match: EMLSAG00000009367 (supercontig:LSalAtl2s:LSalAtl2s599:333271:333800:-1 gene:EMLSAG00000009367 transcript:EMLSAT00000009367 description:"augustus_masked-LSalAtl2s599-processed-gene-3.3")

HSP 1 Score: 49.6766 bits (117), Expect = 4.859e-8
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 0 
Query:  122 CEASCHGIGRVTGKCSADFSDCECSPDTVAAEQYALCLDDGVCSLYCQR-QGSARGHCKGP-TGWECRCYSNQD 193
            C+  C  IGR+ G+C AD  DC CS   +     +LC+ D VCS++C+  +G + G C G     EC C+S + 
Sbjct:   75 CKTFCQSIGRIGGECMADNHDCICSTSRIPYFYRSLCVTDEVCSVFCKTYRGLSGGQCTGXGITKECECFSRRS 148
[Close]
BLAST of laminin subunit beta- partial vs. nr
Match: gi|1148368765|gb|AQS22625.1| (hypothetical protein [Pseudodiaptomus poplesia])

HSP 1 Score: 89.7373 bits (221), Expect = 4.588e-19
Identity = 56/174 (32.18%), Postives = 79/174 (45.40%), Query Frame = 0 
Query:   21 PSEAIRFRCGILAFFGNDRACRASCWVVGRKTGFCDEEGNCNCNPEDLNVRESIDNLLGGMDVMEYVSLKYREFEEEVSSWSLTKSVKQLVPSRCRLGNGFCEASCHGIGRVTGKCSADFSDCECSPDTVAAEQYALCLDDGVCSLYCQRQGSARGHCKGPTGWECRCYSNQDE 194
            P     FRC    FFGN  AC A C V+G+ +G CD +  C+C+   +N+                                     + ++PSRC LG   CE +CH IGR TG C  +  DC CS   ++  ++ALC  +  C ++CQ  G A G+C    GW C C SN++ 
Sbjct:   16 PFTEAGFRC----FFGN-WACTAGCVVLGQSSGLCDSDKICHCSENKININH----------------------------------FRAMLPSRCLLGQSACEGTCHAIGRSTGVCKNN--DCACSDTYISPSEFALCAAESTCRMHCQSGGYATGNCD---GWACNCVSNRNS 145
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BLAST of laminin subunit beta- partial vs. nr
Match: gi|1148368781|gb|AQS22633.1| (hypothetical protein [Pseudodiaptomus poplesia])

HSP 1 Score: 88.9669 bits (219), Expect = 9.356e-19
Identity = 55/174 (31.61%), Postives = 79/174 (45.40%), Query Frame = 0 
Query:   21 PSEAIRFRCGILAFFGNDRACRASCWVVGRKTGFCDEEGNCNCNPEDLNVRESIDNLLGGMDVMEYVSLKYREFEEEVSSWSLTKSVKQLVPSRCRLGNGFCEASCHGIGRVTGKCSADFSDCECSPDTVAAEQYALCLDDGVCSLYCQRQGSARGHCKGPTGWECRCYSNQDE 194
            P     FRC    FFGN  AC A C ++G+ +G CD +  C+C+   +N+                                     + ++PSRC LG   CE +CH IGR TG C  +  DC CS   ++  ++ALC  +  C ++CQ  G A G+C    GW C C SN++ 
Sbjct:   16 PFTEAGFRC----FFGN-WACTAGCVMLGQSSGLCDSDKICHCSKNKININH----------------------------------FRAMLPSRCLLGQSACEGTCHAIGRSTGVCKNN--DCACSDTYISPSEFALCAAESTCRMHCQSGGYATGNC---VGWACNCVSNRNS 145
[Close]
BLAST of laminin subunit beta- partial vs. nr
Match: gi|1325274451|ref|XP_023321879.1| (uncharacterized protein LOC111696498 [Eurytemora affinis])

HSP 1 Score: 85.5001 bits (210), Expect = 1.639e-17
Identity = 53/185 (28.65%), Postives = 80/185 (43.24%), Query Frame = 0 
Query:    7 LSVFVALALGFQATPSEAIRFRCGILAFFGNDRACRASCWVVGRKTGFCDEEGNCNCNPEDLNVRESIDNLLGGMDVMEYVSLKYREFEEEVSSWSLTKSVKQLVPSRCRLGNGFCEASCHGIGRVTGKCSADFS---DCECSPDTVAAEQYALCLDDGVCSLYCQRQGSARGHCKGPTGWECRC 188
            ++  +   L F          RC +      D  C   C ++G+ +G CD +GNC+C+ + + ++E                                   K L+PSRC LG+ FCE +C+ IGR  G C+   S   DC CS D +  +++ALC  +  C L C+ QG   G C    GW+C C
Sbjct:    1 MNFLILSLLSFTMVVHSEAGLRCAL-----GDVGCTVGCVLLGKTSGICDGDGNCHCSEKSIGIQE----------------------------------FKDLLPSRCDLGDKFCEGTCNAIGRRNGTCTTLESGKKDCTCSDDYLTPKEFALCAAETTCYLNCKAQGLGSGKC---VGWKCTC 143
[Close]
BLAST of laminin subunit beta- partial vs. nr
Match: gi|1325281253|ref|XP_023325302.1| (teneurin-3-like [Eurytemora affinis])

HSP 1 Score: 82.8037 bits (203), Expect = 1.980e-16
Identity = 56/186 (30.11%), Postives = 83/186 (44.62%), Query Frame = 0 
Query:    9 VFVALALGFQATPSEAIRFRCGILAFFGNDRACRASCWVVGRKTGFCDEEGNCNCNPEDLNVRESIDNLLGGMDVMEYVSLKYREFEEEVSSWSLTKSVKQLVPSRCRLGNGFCEASCHGIGRVTGKCSADFSDCECSPDTVAAEQYALCLDDGVCSLYCQRQGSARGHCKGPTGWECRCYSNQDE 194
            +F +L L     P  +  FRC     FGN  AC   C  +G+ +G CD   +C+C+ + +++                                   S K+L+PSRC LG+ FCE +CH +GR  G C  +  +C CS   +   ++ LC  +  C  +CQ  GSA G C    GW C C S++ E
Sbjct:    2 MFKSLILVAALVPLCSAGFRCT----FGN-WACTTGCVFLGQTSGVCDANWDCHCSEKSISL----------------------------------NSFKRLLPSRCLLGDSFCEGTCHAMGRSNGTCKDN--NCSCSNTYLTPSEFLLCAAESTCRTHCQANGSATGVC---LGWSCECKSSEAE 143
The following BLAST results are available for this feature:
BLAST of laminin subunit beta- partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 5
Match NameE-valueIdentityDescription
EMLSAG000000039559.044e-3137.35supercontig:LSalAtl2s:LSalAtl2s211:994215:1002048:... [more]
EMLSAG000000069705.805e-2233.16supercontig:LSalAtl2s:LSalAtl2s396:202568:204244:1... [more]
EMLSAG000000093694.480e-1125.63supercontig:LSalAtl2s:LSalAtl2s599:352791:354595:-... [more]
EMLSAG000000093681.533e-839.13supercontig:LSalAtl2s:LSalAtl2s599:336881:337404:-... [more]
EMLSAG000000093674.859e-837.84supercontig:LSalAtl2s:LSalAtl2s599:333271:333800:-... [more]
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BLAST of laminin subunit beta- partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of laminin subunit beta- partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 4
Match NameE-valueIdentityDescription
gi|1148368765|gb|AQS22625.1|4.588e-1932.18hypothetical protein [Pseudodiaptomus poplesia][more]
gi|1148368781|gb|AQS22633.1|9.356e-1931.61hypothetical protein [Pseudodiaptomus poplesia][more]
gi|1325274451|ref|XP_023321879.1|1.639e-1728.65uncharacterized protein LOC111696498 [Eurytemora a... [more]
gi|1325281253|ref|XP_023325302.1|1.980e-1630.11teneurin-3-like [Eurytemora affinis][more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold231_size243715supercontigscaffold231_size243715:228094..229135 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold231_size243715-snap-gene-1.45-mRNA-1maker-scaffold231_size243715-snap-gene-1.45-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold231_size243715:228094..229135+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold231_size243715-snap-gene-1.45 ID=maker-scaffold231_size243715-snap-gene-1.45|Name=laminin subunit beta- partial|organism=Tigriopus kingsejongensis|type=gene|length=1042bp|location=Sequence derived from alignment at scaffold231_size243715:228094..229135+ (Tigriopus kingsejongensis)
CAAGCTTTAGGGTCGATCAGCCTGACCTCCTTACGTGTTCAACATGAGGA
GTTCTCTTTTCCTCTCGGTCTTCGTGGCCTTGGCTCTGGGCTTCCAGGCA
ACGCCCAGTGAGGCCATCCGCTTCCGATGTGGTATTTTGGCCTTCTTTGG
CAACGATCGGGCTTGTCGGGCCTCCTGTTGGGTGGTGGGTCGGAAAACAG
GTAAGATACCCATCCTCCTTGGGTGCAAGAATGTTGCCCTGAAGGACACC
CATTCCAGGCTTCTGCGATGAGGAGGGCAACTGCAATTGCAATCCAGAGG
ACTTGAACGTGCGAGAGAGCATCGACAACCTCTTGGGTGGGATGGACGTC
ATGGAGTACGTCTCGCTCAAGTATCGAGAGTTCGAGGAGGAGGTCTCGTC
CTGGTCGCTGACCAAGTCCGTCAAGCAACTGGTGCCATCCCGATGTCGCC
TGGGCAACGGGTGAGCGAGCTTATTTAAAGGCTCGGTGAGAGAGAAGGTT
TAACAGTATTATGACCTTCTATTTTCCAGGTTCTGCGAGGCCTCTTGCCA
CGGCATTGGCCGTGTCACGGGCAAATGCTCGGCCGACTTCAGCGATTGCG
AGTGCTCTCCCGACACAGTGGCAGCCGAACAATACGCCCTTTGCCTCGAC
GATGGGGTTTGCAGCCTCTATTGCCAGAGGCAGGGCAGTGCCCGAGGTCA
TTGCAAGGGCCCGACCGGATGGGAATGTCGGTGCTACTCGAACCAGGATG
AGAGGCCCGAGGACGAATATGGTACAGATTGAGCGTTGCTCTGGGCGTGC
TCACGGACACGTAATCACCTTTTGAATTGCTTTTCATCTTGCAGAATTTG
GCCTGGCTCAACTCAAGGTGGCTAAGCCCAAAGTTTGATCCCCTTATTGG
AGGCCGGAATGGATGCATTGGAAATCTTGTTGAGATTTTTTCTACCTCGC
AGATACCAAACAGCAATCAACCCCATTGAGCATTGTAGGGCGTTGGGATG
CTTGTGCGAAATATACATGTATACTGTACGTTACAATCATGA
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Synonyms
The feature 'laminin subunit beta- partial' has the following synonyms
Synonym
Tk10030
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