EMLSAG00000009367, EMLSAG00000009367-692133 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000009367
Unique NameEMLSAG00000009367-692133
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000009367 vs. C. finmarchicus
Match: gi|592951771|gb|GAXK01006782.1| (TSA: Calanus finmarchicus comp69832_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 50.447 bits (119), Expect = 1.720e-7
Identity = 42/136 (30.88%), Postives = 58/136 (42.65%), Query Frame = 0 
Query:   19 CDQSPIICEWSCAFGVNTGGTCLKVESGRRECFCYE-----TNAQKTICAGYFRPENAGRACKTFCQSIGRIGGECMADNHDCICSTSRIPYFYRSLCVTDEVCSVFCKTYRGLSGGQCTGXGITKECECFSRRSP 149
            C      C +SC     +GG+C    +   ECFC E      N Q+ + +   R +     C   C +IGR  G C  DN DC CS   +     +LC +  VC + C+  +G + G C G      CEC S   P
Sbjct:  103 CSFGEFACSFSCKVLGQSGGSC----ADDGECFCSELPLNLENFQELLPS---RCQLGASFCDKTCHAIGRFNGTCNDDNTDCTCSDESVSAEEFALCASQSVCILNCQ-RKGKASGVCNGWA----CECVSETDP 474
[Close]
BLAST of EMLSAG00000009367 vs. C. finmarchicus
Match: gi|592951772|gb|GAXK01006781.1| (TSA: Calanus finmarchicus comp69832_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 50.8322 bits (120), Expect = 2.167e-7
Identity = 42/136 (30.88%), Postives = 59/136 (43.38%), Query Frame = 0 
Query:   19 CDQSPIICEWSCAFGVNTGGTCLKVESGRRECFCYE-----TNAQKTICAGYFRPENAGRACKTFCQSIGRIGGECMADNHDCICSTSRIPYFYRSLCVTDEVCSVFCKTYRGLSGGQCTGXGITKECECFSRRSP 149
            C      C +SC     +GG+C    +   ECFC E      N Q+ + +   R +     C   C +IGR  G C  DN DC CS   +     +LC +  VC + C+  +G + G C G      CEC S  +P
Sbjct:  103 CSFGEFACSFSCKVLGQSGGSC----ADDGECFCSELPLNLENFQELLPS---RCQLGASFCDKTCHAIGRFNGTCNDDNTDCTCSDESVSAEEFALCASQSVCILNCQ-RKGKASGVCNGWA----CECVSETNP 474
[Close]
BLAST of EMLSAG00000009367 vs. C. finmarchicus
Match: gi|592951770|gb|GAXK01006783.1| (TSA: Calanus finmarchicus comp69832_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 47.3654 bits (111), Expect = 2.334e-6
Identity = 41/132 (31.06%), Postives = 57/132 (43.18%), Query Frame = 0 
Query:   19 CDQSPIICEWSCAFGVNTGGTCLKVESGRRECFCYE-----TNAQKTICAGYFRPENAGRACKTFCQSIGRIGGECMADNHDCICSTSRIPYFYRSLCVTDEVCSVFCKTYRGLSGGQCTGXGITKECECFS 145
            C      C +SC     +GG+C    +   ECFC E      N Q+ + +   R +     C   C +IGR  G C  DN DC CS   +     +LC +  VC + C+  +G + G C G      CEC S
Sbjct:  103 CSFGEFACSFSCKVLGQSGGSC----ADDGECFCSELPLNLENFQELLPS---RCQLGASFCDKTCHAIGRFNGTCNDDNTDCTCSDESVSAEEFALCASQSVCILNCQ-RKGKASGVCNGWA----CECVS 462
[Close]
BLAST of EMLSAG00000009367 vs. C. finmarchicus
Match: gi|592807447|gb|GAXK01147121.1| (TSA: Calanus finmarchicus comp42486_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 36.5798 bits (83), Expect = 1.873e-2
Identity = 39/136 (28.68%), Postives = 56/136 (41.18%), Query Frame = 0 
Query:   19 CDQSPIICEWSCAFGVNTGGTCLKVESGRRECFCYETNAQKTICAGYFRPENAGRA------CKTFCQSIGRIGGECMADNH-DCICSTSRIPYFYRSLCVTDEVCSVFCKTYRGLSGGQCTGXGITKECECFSRR 147
            C    + C  SC     T G C        +C C E    K+I    FR     R       C+  C ++GR  G C A    DC CS + I     +LC  +  C + C+  +GL+ G+C G      C+C S++
Sbjct:  137 CSLGELACSASCVTLGQTSGIC----DAEGDCICSE----KSISLNNFRNLLPSRCNLGLSFCQATCNALGRESGTCAATGATDCQCSENYISPKAFALCAAESTCRLDCQ-RQGLATGECFGW----SCKCQSKK 505
[Close]
BLAST of EMLSAG00000009367 vs. C. finmarchicus
Match: gi|592830758|gb|GAXK01126786.1| (TSA: Calanus finmarchicus comp47097_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 2.810e-1
Identity = 36/124 (29.03%), Postives = 49/124 (39.52%), Query Frame = 0 
Query:   28 WSCAFGVNTGGTCLKVESGRRECFCYETNAQKTICAGYFRPENAGR------ACKTFCQSIGRIGGECMADNHDCICSTSRIPYFYRSLCVTDEVCSVFCKTYRGLSGGQCTGXGITKECECFS 145
            W+C  G    G    +     +C+C E    ++I    FR     R       C+T C S+GRI G C  D   C CS   +      LC     C + C+  +G   G+C G      CEC S
Sbjct:  112 WACTAGCVMLGQTSGLCDDAGKCWCSE----RSIALSDFRALLPSRCDLGQAVCETTCHSLGRINGTC--DKFGCECSDDFLTPSQFLLCAAASTCRMDCQA-KGHGTGECLGW----SCECRS 450
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BLAST of EMLSAG00000009367 vs. C. finmarchicus
Match: gi|592928013|gb|GAXK01030474.1| (TSA: Calanus finmarchicus comp3671247_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 4.008e-1
Identity = 26/79 (32.91%), Postives = 32/79 (40.51%), Query Frame = 0 
Query:   24 IICEWSCAFGVNTGGTCLKVESGRRECFCYET--NAQKTICAGYFRP--ENAGRACKTFCQSIGRIGGECMADNHDCIC 98
            + C  SC     +GG C    +   EC C E+  N    I   Y           C   C++IGRI G C  DN DC C
Sbjct:    3 LACSASCKVLGQSGGNC----ADNGECLCAESPLNFNLEIFQEYLPSCCRLGASFCNKTCRAIGRINGTCNGDNTDCTC 227

HSP 2 Score: 28.4906 bits (62), Expect = 6.793e+0
Identity = 13/32 (40.62%), Postives = 21/32 (65.62%), Query Frame = 0 
Query:   74 ACKTFCQSIGRIGGECMADNHDCICSTSRIPY 105
            AC   C+ +G+ GG C ADN +C+C+ S + +
Sbjct:  132 ACSASCKVLGQSGGNC-ADNGECLCAESPLNF 224
[Close]
BLAST of EMLSAG00000009367 vs. C. finmarchicus
Match: gi|592860806|gb|GAXK01096756.1| (TSA: Calanus finmarchicus comp55821_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 1.532e+0
Identity = 23/69 (33.33%), Postives = 35/69 (50.72%), Query Frame = 0 
Query:   70 NAGRA-CKTFCQSIGRIGGECMADNH---DCICSTSRIPYFYRSLCVTDEVCSVFCKTYRGLSGGQCTG 134
            N G++ C+  C SIGR  G C   +    DC CS   +     +LC  +  C + C+  +GL+ G+C G
Sbjct:  192 NLGQSFCEVTCNSIGRKNGTCGTTDSGGSDCQCSEDYLSPSDFALCGAESTCRLDCQ-RQGLATGECFG 395
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BLAST of EMLSAG00000009367 vs. C. finmarchicus
Match: gi|592957393|gb|GAXK01001163.1| (TSA: Calanus finmarchicus comp4142333_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 1.860e+0
Identity = 16/70 (22.86%), Postives = 29/70 (41.43%), Query Frame = 0 
Query:   17 ISCDQSPIICEWSCAFGVNTGGTCLKVESGRRECFCYETNAQKTICAGYFRPENAGRACKTFCQSIGRIG 86
            I   +   + E   A  +    + +K +S + +      NAQK +  GY  PE   + C  +C +   +G
Sbjct:  584 IQTTRDKAMTEVVVAAMMKVMDSMMKGQSNQLDPLFLSPNAQKYVMFGYISPERYRKTCVQYCMNGNFMG 793
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BLAST of EMLSAG00000009367 vs. C. finmarchicus
Match: gi|592816310|gb|GAXK01138258.1| (TSA: Calanus finmarchicus comp103160_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 3.745e+0
Identity = 22/94 (23.40%), Postives = 38/94 (40.43%), Query Frame = 0 
Query:   31 AFGVNT-GGTCLKVESGRRECFCYETNAQKTICAGYFRPENAGRACKTFCQSIGRIGGE-------CMADNHDCICSTSRIPYFYRSLCVTDEV 116
            A  V+T   +C  V+   R CF +    + TI    F      ++C T C+SI     E       C+   H C    S++ +  R + +  ++
Sbjct: 2359 AVTVDTILQSCFTVDQSSRHCFIHFLTPESTIKMNPFIDLIVQKSCWTICRSISSHVAEQASSCVLCLTRRHHC---DSKLEHHLRQIFLIHDL 2631
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BLAST of EMLSAG00000009367 vs. C. finmarchicus
Match: gi|592951769|gb|GAXK01006784.1| (TSA: Calanus finmarchicus comp69832_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 4.431e+0
Identity = 12/39 (30.77%), Postives = 21/39 (53.85%), Query Frame = 0 
Query:   79 CQSIGRIGGECMADNHDCICSTSRIPYFYRSLCVTDEVC 117
            C ++G++  +C  D+ DC CS   +     +LC +  VC
Sbjct:  265 CHALGQVNRKCNYDDTDCTCSDESVSAEEFALCASKSVC 381
[Close]
BLAST of EMLSAG00000009367 vs. L. salmonis peptides
Match: EMLSAP00000009367 (pep:novel supercontig:LSalAtl2s:LSalAtl2s599:333271:333800:-1 gene:EMLSAG00000009367 transcript:EMLSAT00000009367 description:"augustus_masked-LSalAtl2s599-processed-gene-3.3")

HSP 1 Score: 315.464 bits (807), Expect = 4.469e-111
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0 
Query:    1 MFFLWFTALCNPNNRRISCDQSPIICEWSCAFGVNTGGTCLKVESGRRECFCYETNAQKTICAGYFRPENAGRACKTFCQSIGRIGGECMADNHDCICSTSRIPYFYRSLCVTDEVCSVFCKTYRGLSGGQCTGXGITKECECFSRRSPLSVISTP 156
            MFFLWFTALCNPNNRRISCDQSPIICEWSCAFGVNTGGTCLKVESGRRECFCYETNAQKTICAGYFRPENAGRACKTFCQSIGRIGGECMADNHDCICSTSRIPYFYRSLCVTDEVCSVFCKTYRGLSGGQCTGXGITKECECFSRRSPLSVISTP
Sbjct:    1 MFFLWFTALCNPNNRRISCDQSPIICEWSCAFGVNTGGTCLKVESGRRECFCYETNAQKTICAGYFRPENAGRACKTFCQSIGRIGGECMADNHDCICSTSRIPYFYRSLCVTDEVCSVFCKTYRGLSGGQCTGXGITKECECFSRRSPLSVISTP 156
[Close]
BLAST of EMLSAG00000009367 vs. L. salmonis peptides
Match: EMLSAP00000009369 (pep:novel supercontig:LSalAtl2s:LSalAtl2s599:352791:354595:-1 gene:EMLSAG00000009369 transcript:EMLSAT00000009369 description:"maker-LSalAtl2s599-snap-gene-3.41")

HSP 1 Score: 80.4925 bits (197), Expect = 2.750e-19
Identity = 44/134 (32.84%), Postives = 69/134 (51.49%), Query Frame = 0 
Query:   14 NRRISCDQSPIICEWSCAFGVNTGGTCLKVESGRRECFCYETNAQKTICAGYFRPENAGRACKTFCQSIGRIGGECMADNHDCICSTSRIPYFYRSLCVTDEVCSVFCKTYRGLSGGQCTGXGITKECECFSRR 147
            N  + C  +  +C+W+C  G ++GG C     G   C C E + +K +C G   PE AG +   FCQ+ GR  G C    ++C C+   +   +   C+ DEVCSVFC+     + G+C G     +C+C+S +
Sbjct:   38 NDLVRCGLTESVCKWTCRLGGHSGGFCSPDADGGSSCICSEEDLEKYVCGGDVGPEIAGXSXAGFCQAKGRQSGNCDLIKNECACTKEYLQLSHIK-CINDEVCSVFCQYKERKANGRCEGPN-KWDCKCYSMK 169
[Close]
BLAST of EMLSAG00000009367 vs. L. salmonis peptides
Match: EMLSAP00000009368 (pep:novel supercontig:LSalAtl2s:LSalAtl2s599:336881:337404:-1 gene:EMLSAG00000009368 transcript:EMLSAT00000009368 description:"snap_masked-LSalAtl2s599-processed-gene-3.11")

HSP 1 Score: 78.1814 bits (191), Expect = 1.015e-18
Identity = 54/147 (36.73%), Postives = 74/147 (50.34%), Query Frame = 0 
Query:   12 PNNRRISCDQSPIICEWSCAFGVNTGGTCLKVESGRRECFCYETNAQKTICAGYFRPENAGRACKTFCQSIGRIGGECMADNHDCICSTSRIPYFYRSLCVTDEVCSVFCKTYRGLSGGQCTGXGITKECEC---FSRRSPLSVIST 155
            P+N  + C  S  IC +SC FG    G C+  E+G + C C     Q++IC      + +   C  +CQ IGR  G C  +N+ C CS  R       LCV +EVCS+ C+  RG S G+C+G     +CEC   FS    +S  ST
Sbjct:    6 PSNH-LRCQLSESICSFSCLFGGYKTGLCIPNENGGKACVCVNEMLQESICQPDNEEKTSAYMCAGYCQVIGRQTGNC--ENNVCECSRERFYLSRDYLCVANEVCSMHCQIVRGGSNGKCSGPN-NWDCECDYGFSHDDSMSFNST 148
[Close]
BLAST of EMLSAG00000009367 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold508_size152036-snap-gene-0.17 (protein:Tk11405 transcript:maker-scaffold508_size152036-snap-gene-0.17-mRNA-1 annotation:"hypothetical protein H257_02733")

HSP 1 Score: 55.4546 bits (132), Expect = 1.695e-10
Identity = 37/125 (29.60%), Postives = 57/125 (45.60%), Query Frame = 0 
Query:   22 SPIICEWSCAFGVNTGGTCLKVESGRRECFCYETNAQKTICAGYFRPENAGRACKTFCQSIGRIGGECMADNHDCICSTSRIPYFYRSLCVTDEVCSVFCKTYRGLSGGQCTGXGITKECECFSR 146
            S + C WSC    ++GG+C        EC C E +  + +C G      A   C  +CQ  G   G+C   N +C C+ +         C+ +E CS++C+ ++  S G C G     EC C S+
Sbjct:   40 SGLFCRWSCRLLGHSGGSC----DADNECRCSEEDLDRYVCGGNVTETTANNLCAGWCQFRGLQTGDCDFTNGECQCTENDKLATRHIKCINEEACSIYCQ-FKRKSAGFCGGTN-DWECICLSK 158
[Close]
BLAST of EMLSAG00000009367 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold231_size243715-snap-gene-1.45 (protein:Tk10030 transcript:maker-scaffold231_size243715-snap-gene-1.45-mRNA-1 annotation:"laminin subunit beta- partial")

HSP 1 Score: 49.6766 bits (117), Expect = 3.909e-8
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 0 
Query:   75 CKTFCQSIGRIGGECMADNHDCICSTSRIPYFYRSLCVTDEVCSVFCKTYRGLSGGQCTGXGITKECECFSRRS 148
            C+  C  IGR+ G+C AD  DC CS   +     +LC+ D VCS++C+  +G + G C G     EC C+S + 
Sbjct:  122 CEASCHGIGRVTGKCSADFSDCECSPDTVAAEQYALCLDDGVCSLYCQR-QGSARGHCKGP-TGWECRCYSNQD 193
The following BLAST results are available for this feature:
BLAST of EMLSAG00000009367 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009367 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11
Match NameE-valueIdentityDescription
gi|592951771|gb|GAXK01006782.1|1.720e-730.88TSA: Calanus finmarchicus comp69832_c1_seq2 transc... [more]
gi|592951772|gb|GAXK01006781.1|2.167e-730.88TSA: Calanus finmarchicus comp69832_c1_seq1 transc... [more]
gi|592951770|gb|GAXK01006783.1|2.334e-631.06TSA: Calanus finmarchicus comp69832_c1_seq3 transc... [more]
gi|592807447|gb|GAXK01147121.1|1.873e-228.68TSA: Calanus finmarchicus comp42486_c1_seq1 transc... [more]
gi|592830758|gb|GAXK01126786.1|2.810e-129.03TSA: Calanus finmarchicus comp47097_c0_seq1 transc... [more]
gi|592928013|gb|GAXK01030474.1|4.008e-132.91TSA: Calanus finmarchicus comp3671247_c0_seq1 tran... [more]
gi|592860806|gb|GAXK01096756.1|1.532e+033.33TSA: Calanus finmarchicus comp55821_c0_seq1 transc... [more]
gi|592957393|gb|GAXK01001163.1|1.860e+022.86TSA: Calanus finmarchicus comp4142333_c0_seq1 tran... [more]
gi|592816310|gb|GAXK01138258.1|3.745e+023.40TSA: Calanus finmarchicus comp103160_c0_seq1 trans... [more]
gi|592951769|gb|GAXK01006784.1|4.431e+030.77TSA: Calanus finmarchicus comp69832_c1_seq4 transc... [more]

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BLAST of EMLSAG00000009367 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000093674.469e-111100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s599:33327... [more]
EMLSAP000000093692.750e-1932.84pep:novel supercontig:LSalAtl2s:LSalAtl2s599:35279... [more]
EMLSAP000000093681.015e-1836.73pep:novel supercontig:LSalAtl2s:LSalAtl2s599:33688... [more]
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BLAST of EMLSAG00000009367 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009367 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009367 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009367 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold508_size152036-snap-gene-0.171.695e-1029.60protein:Tk11405 transcript:maker-scaffold508_size1... [more]
maker-scaffold231_size243715-snap-gene-1.453.909e-837.84protein:Tk10030 transcript:maker-scaffold231_size2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s599supercontigLSalAtl2s599:333271..333800 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s599-processed-gene-3.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000009367 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000009367EMLSAT00000009367-705214Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s599:333271..333800-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000009367-692133 ID=EMLSAG00000009367-692133|Name=EMLSAG00000009367|organism=Lepeophtheirus salmonis|type=gene|length=530bp|location=Sequence derived from alignment at LSalAtl2s599:333271..333800- (Lepeophtheirus salmonis)
ATGTTTTTTCTCTGGTTTACAGCCCTTTGTAATCCCAACAATCGACGCAT
AAGTTGTGACCAATCACCGATAATATGCGAATGGTCTTGTGCATTTGGAG
TTAATACAGGTGGAACTTGTCTTAAAGTAGAGTCTGGAAGAAGAGAATGT
TTCTGCTACGAGACGAATGCTCAAAAAACTATTTGTGCTGGATATTTCCG
CCCTGAAAATGCTGGACGAGCTTGCAAAACATTTTGTCAATCCATTGGTC
GCATTGGAGGTAAACAATAAACTAATTAATGTTATTGAGTACTTTATTTA
AGCTTTGATATTTGATAGGTGAATGCATGGCGGATAATCATGATTGTATT
TGCTCCACATCCCGAATCCCTTATTTCTATAGGTCATTGTGTGTAACAGA
TGAAGTTTGTTCAGTTTTTTGTAAAACATATCGCGGATTGTCTGGTGGAC
AATGTACTGGGYCTGGAATCACAAAGGAATGTGAATGTTTTAGTCGTCGA
TCTCCATTATCAGTTATCTCTACTCCTTAG
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