EMLSAG00000000033, EMLSAG00000000033-682799 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000033
Unique NameEMLSAG00000000033-682799
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000033 vs. C. finmarchicus
Match: gi|592780445|gb|GAXK01174123.1| (TSA: Calanus finmarchicus comp230874_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.171e+0
Identity = 18/56 (32.14%), Postives = 32/56 (57.14%), Query Frame = 0 
Query:   31 TLLKKKDSLSEDFETLFINMKSNESHHFLISSINSSRELSIWSNNIGKMEFHIIEL 86
             L   +DSL +DF+TLF+   +N S + +  ++ +S  L+   + I K  FH++ L
Sbjct:  212 PLFISRDSLFQDFQTLFLITVANSS*NLIFCNLYASSLLNCRVHQI-KQPFHVLLL 376
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BLAST of EMLSAG00000000033 vs. C. finmarchicus
Match: gi|592771229|gb|GAXK01183339.1| (TSA: Calanus finmarchicus comp57829_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.874e+0
Identity = 16/54 (29.63%), Postives = 27/54 (50.00%), Query Frame = 0 
Query:   12 IFQTQRRRNCQVPYFFSCFTLLKKKDSLSEDFETLFINMKSNESHHFLISSINS 65
            +F  + R N   PYF +   ++ K   LS     ++ +M    SH+F+ SS N+
Sbjct:   50 LFLLEFRGNPVAPYFHATEVVVAKNSCLSPISREVYHDMSRPLSHYFIASSHNT 211
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BLAST of EMLSAG00000000033 vs. C. finmarchicus
Match: gi|592757280|gb|GAXK01197133.1| (TSA: Calanus finmarchicus comp5754730_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.866e+0
Identity = 16/51 (31.37%), Postives = 26/51 (50.98%), Query Frame = 0 
Query:   34 KKKDSLSEDFETLFINMKSNESHHFLISSINSSRELSIWSNN---IGKMEF 81
            ++KD   E+ +     M+ +E H FL+  +N  REL I       +GK +F
Sbjct:   94 ERKDEELENIKVSLSKMRKSELHSFLLQRLNLQRELGIGMGGTFRLGKFDF 246
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BLAST of EMLSAG00000000033 vs. C. finmarchicus
Match: gi|592777656|gb|GAXK01176912.1| (TSA: Calanus finmarchicus comp140249_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.519e+0
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:   19 RNCQVPYFFSCFTLLKKKDSLSEDFETLF 47
            R   +   F CFTLL++K SL+  + T+F
Sbjct:  721 RYSMIKIMFLCFTLLRRKTSLNNPYTTMF 807
[Close]
BLAST of EMLSAG00000000033 vs. C. finmarchicus
Match: gi|592779661|gb|GAXK01174907.1| (TSA: Calanus finmarchicus comp1116321_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.744e+0
Identity = 15/59 (25.42%), Postives = 26/59 (44.07%), Query Frame = 0 
Query:   24 PYFFSCFTLLKKKDSLSEDFETLFINMKSNESHHFLISSINSSRELSIWSNNIGKMEFH 82
            P+  +  T+++   SL      L  N+++ ES      + +      IW  N+GK  FH
Sbjct:   82 PFMINLQTMIRSLGSLMRLRSMLASNLQNLESETIYARASDCPTLRVIWPQNVGKYNFH 258
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BLAST of EMLSAG00000000033 vs. L. salmonis peptides
Match: EMLSAP00000000033 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:200464:202641:-1 gene:EMLSAG00000000033 transcript:EMLSAT00000000033 description:"maker-LSalAtl2s1006-snap-gene-1.30")

HSP 1 Score: 175.252 bits (443), Expect = 4.645e-58
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 
Query:    1 MCCTLIKLYESIFQTQRRRNCQVPYFFSCFTLLKKKDSLSEDFETLFINMKSNESHHFLISSINSSRELSIWSNNIGKMEFHIIEL 86
            MCCTLIKLYESIFQTQRRRNCQVPYFFSCFTLLKKKDSLSEDFETLFINMKSNESHHFLISSINSSRELSIWSNNIGKMEFHIIEL
Sbjct:    1 MCCTLIKLYESIFQTQRRRNCQVPYFFSCFTLLKKKDSLSEDFETLFINMKSNESHHFLISSINSSRELSIWSNNIGKMEFHIIEL 86
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000033 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000033 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592780445|gb|GAXK01174123.1|1.171e+032.14TSA: Calanus finmarchicus comp230874_c0_seq1 trans... [more]
gi|592771229|gb|GAXK01183339.1|1.874e+029.63TSA: Calanus finmarchicus comp57829_c1_seq2 transc... [more]
gi|592757280|gb|GAXK01197133.1|2.866e+031.37TSA: Calanus finmarchicus comp5754730_c0_seq1 tran... [more]
gi|592777656|gb|GAXK01176912.1|3.519e+041.38TSA: Calanus finmarchicus comp140249_c1_seq2 trans... [more]
gi|592779661|gb|GAXK01174907.1|6.744e+025.42TSA: Calanus finmarchicus comp1116321_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000033 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000000334.645e-58100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:2004... [more]
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BLAST of EMLSAG00000000033 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000033 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000033 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000033 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1006supercontigLSalAtl2s1006:200464..202641 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1006-snap-gene-1.30
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000033 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000033EMLSAT00000000033-695880Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1006:200464..202641-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000033-682799 ID=EMLSAG00000000033-682799|Name=EMLSAG00000000033|organism=Lepeophtheirus salmonis|type=gene|length=2178bp|location=Sequence derived from alignment at LSalAtl2s1006:200464..202641- (Lepeophtheirus salmonis)
ATGTGTTGTACTCTGATCAAACTCTACGAATCAATATTTCAAACTCAGAG
GAGGAGGAATTGTCAAGTACCCTACTTTTTCTCTTGTTTTACCCTTTTGA
AGAAGAAGGATTCTCTCTCCGAGGACTTTGAGACATTGTTCATCAATATG
AGTAGGATAAATATATTTTTCATTCTTACCTCTACGTTCCTCCATTTCAT
AATTATTTGTTAATTCCTTCCACTTTTTGTATTCGTATTTGATATTTATA
ACGGTACTCTTTTCAAAAGGGGCTAAAACAAGTTTTATTTTCGATCCATA
ATGATTTAAATCATATCAAATGCGTGAAGTCCTACATATATATAGCGCCC
CTCCAGTCTACACCCTGCAGACGCCCCTGATATATTTCATATTTTATTCG
AATTCGGCTAATTAAAAGTAGATTTAAAAAAATAACATTTTGAAAGAATA
GTTTGAATCTTCCTTCTTTTTTATTTTATTATTATGTTTTAATAACGCCC
ATTCAGCCATAAATTTAAAAGGCTGAATAGATATTCCTATAAATAAAATT
TAGATGAAGATTTGAGTAATTGGAGATGTGATCATTTATATCAAGTTTAG
TTTTTTATTATTTAGGATTATAACGTATCTACAATTACATAAAATACAAC
AATTGCATTAAACTTTAAATTTATTCTCTATCTACTTAACTAAGCCAAGC
AGCCAAGTGAAAAAACCTACATATATTTTTCTTACTCTATGGGGGATGTT
CACAATTTTAAATCACAACGGACGACATCAACGATTCATTTATAGAATCG
GTCTACAATTAATTTTAAATGAGACAAAATCCAGACCAAATCTCTGAGGC
CGATCTAGGCCGATTTTTACTCGGAGATCGGTCCGGATCGAACTTCTGTA
AATATTTATTATCCGTCTCCCCTACTAAGCCAAGTAAAAATCCTTGTCAA
TTCTATACATTCTCTTCTGTCCACATAAAATCCTAAGAGTCTCATTACGG
TCCTAAGATTTTCAGAGCAAATACAAACCCTAATTTATATATATCTCTCT
CAAACGTGGTGAATAGTGTTTTAAACTGCATGTAAATTTAACTATGACAG
ACTTTTCAAAAAGATTTTTGTATCCAAAAGTTTTGTAAATAATAATGATT
CAATTAATATTGTTCCGTGTTTACGAAAATAAAAGCGAAGCGCATTTTTG
AAATGCCTAAAACAATTTGCAATCAGATCTCAGACCAACCAAAATGTACT
AAATTTGTTAAATAAGTTAAAGGTTTCTTGGTCAACTATCAGCGGCGTTA
GCAGGATAATGTAAATATACATATATTTAGGGGCGGGGAGGGGGGTTTGG
TTTTTGGAATTTTTTCGAAAAAAAAAATATGTTTTTTGAAAAATAAAAAA
AATCCATAGGTTTTCACAAAAAATATCAAAAATTAAATTTTAAATAGTAA
AGTTTTTGTAAAAGAAATTATAAAATTAAAAAAGAACTAGTAAATGTTTG
TTCAAATATTAATTTTTGTACCTTTTTTTACTTAAATTTTTTTCATCCTA
ACCAAAAATAAATCTAGTAAAAAGGCAACAATTACTTTTTTTTTATCAAT
CTACCCTTTGTAACAGCCCTACTTGCACCTGCACACATTTACTAATTTCA
TCCAAAGCTTTTTGGAATCAGATTTCTAAGTACATTCGTCCTCTATTATC
CCAAGACCTAAACCTCCTTGATTCCACTATATCGGCATGTATTGAGATCC
GGTCCTGCACTAAATTTTGATATTCTCAAAAACGAATAACGGACCAAAAT
TAACAAAATTTGAACAGCTAGGATTGTTGCTTCAAGGTGGTTTGAAGTGC
GTTATTGAAGCCAACGGGCTTCATAATTGACTAAAATAAGAATTTACGCA
CTTTCTATTCAAAATATCAAGTGTTTAGTAATTAATAATTAAGAGATAAG
TACACAAATGTTCCATGAATCTACAATAATAGTGATATAATTAGTTTTAA
AGTCCGTTTGATATTCTTTTAACCTTAAAACACTGCAAAAAAAATCATTT
CTTTATCTTATATTGCAGAATCAAACGAATCTCATCACTTCCTCATCTCT
TCTATTAATTCTTCTCGAGAGTTGTCAATTTGGTCGAATAACATTGGGAA
AATGGAGTTTCACATTATTGAATTGTAA
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