EMLSAG00000000038, EMLSAG00000000038-682804 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000038
Unique NameEMLSAG00000000038-682804
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000038 vs. C. finmarchicus
Match: gi|592798741|gb|GAXK01155827.1| (TSA: Calanus finmarchicus comp5837363_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 1.515e-2
Identity = 17/53 (32.08%), Postives = 30/53 (56.60%), Query Frame = 0 
Query:   19 DIEIAAIQSVQQVLPDTYVSTCFFQFNKAVMDQIAKKGAKTLTEQNNWGFHFV 71
            D E++ I+SV ++L    +  CFF F+KA+  ++ +   KT  E +    HF+
Sbjct:  153 DFELSIIKSVDEMLG-VEIDGCFFHFSKALKSKVDRSRFKTRYEMDEKFQHFI 308
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BLAST of EMLSAG00000000038 vs. C. finmarchicus
Match: gi|592816689|gb|GAXK01137879.1| (TSA: Calanus finmarchicus comp6461465_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 2.443e-2
Identity = 16/56 (28.57%), Postives = 32/56 (57.14%), Query Frame = 0 
Query:   16 MMLDIEIAAIQSVQQVLPDTYVSTCFFQFNKAVMDQIAKKGAKTLTEQNNWGFHFV 71
            ++ D E+  ++S+ ++L +T +  CFF   K    ++ KKG KT  E +++   F+
Sbjct:  356 VLCDFELNILKSIDEML-ETDIFGCFFHHKKCFQRKVDKKGFKTRYENDDYFHEFI 520
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BLAST of EMLSAG00000000038 vs. C. finmarchicus
Match: gi|592937249|gb|GAXK01021304.1| (TSA: Calanus finmarchicus comp7477627_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 2.904e-2
Identity = 16/50 (32.00%), Postives = 26/50 (52.00%), Query Frame = 0 
Query:   16 MMLDIEIAAIQSVQQVLPDTYVSTCFFQFNKAVMDQIAKKGAKTLTEQNN 65
             M D E+    SV    P      C+F F++ V  ++ KKG +T+ E+N+
Sbjct:   39 FMCDFELLIRSSVLLYYPSLKTLGCYFHFSQLVWRRVQKKGFQTIYEKND 188
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BLAST of EMLSAG00000000038 vs. C. finmarchicus
Match: gi|592848957|gb|GAXK01108587.1| (TSA: Calanus finmarchicus comp9004441_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 9.393e-1
Identity = 12/31 (38.71%), Postives = 16/31 (51.61%), Query Frame = 0 
Query:   30 QVLPDTYVSTCFFQFNKAVMDQIAKKGAKTL 60
            Q  PD     C F F KAV  +++K G K +
Sbjct:  248 QFFPDVKPKGCHFHFAKAVFSKVSKNGLKPV 340
[Close]
BLAST of EMLSAG00000000038 vs. C. finmarchicus
Match: gi|592872512|gb|GAXK01085050.1| (TSA: Calanus finmarchicus comp4685881_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 2.816e+0
Identity = 17/68 (25.00%), Postives = 32/68 (47.06%), Query Frame = 0 
Query:   16 MMLDIEIAAIQSVQQVLPDTYVSTCFFQFNKAVMDQIAKKGAKTLTEQNNWGFHFVVDYQYPSHTILE 83
            ++ D E+  ++S+  V+    +  CFF   K    ++ +KG KT+ E +     F+      SH  +E
Sbjct:  331 VLCDFELNILKSID-VMLQCPILGCFFHHKKCFQRKVDRKGFKTMYENDEHFKSFINQCSSLSHLPIE 531
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BLAST of EMLSAG00000000038 vs. L. salmonis peptides
Match: EMLSAP00000000038 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:37164:39919:-1 gene:EMLSAG00000000038 transcript:EMLSAT00000000038 description:"snap_masked-LSalAtl2s1006-processed-gene-0.11")

HSP 1 Score: 184.882 bits (468), Expect = 7.790e-62
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 
Query:    1 MWSIIKEYVGHGPSEMMLDIEIAAIQSVQQVLPDTYVSTCFFQFNKAVMDQIAKKGAKTLTEQNNWGFHFVVDYQYPSHTILELDVC 87
            MWSIIKEYVGHGPSEMMLDIEIAAIQSVQQVLPDTYVSTCFFQFNKAVMDQIAKKGAKTLTEQNNWGFHFVVDYQYPSHTILELDVC
Sbjct:    1 MWSIIKEYVGHGPSEMMLDIEIAAIQSVQQVLPDTYVSTCFFQFNKAVMDQIAKKGAKTLTEQNNWGFHFVVDYQYPSHTILELDVC 87
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000038 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000038 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592798741|gb|GAXK01155827.1|1.515e-232.08TSA: Calanus finmarchicus comp5837363_c0_seq1 tran... [more]
gi|592816689|gb|GAXK01137879.1|2.443e-228.57TSA: Calanus finmarchicus comp6461465_c0_seq1 tran... [more]
gi|592937249|gb|GAXK01021304.1|2.904e-232.00TSA: Calanus finmarchicus comp7477627_c0_seq1 tran... [more]
gi|592848957|gb|GAXK01108587.1|9.393e-138.71TSA: Calanus finmarchicus comp9004441_c0_seq1 tran... [more]
gi|592872512|gb|GAXK01085050.1|2.816e+025.00TSA: Calanus finmarchicus comp4685881_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000038 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000000387.790e-62100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:3716... [more]
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BLAST of EMLSAG00000000038 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000038 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000038 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000038 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1006supercontigLSalAtl2s1006:37164..39919 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1006-processed-gene-0.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000038 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000038EMLSAT00000000038-695885Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1006:37164..39919-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000038-682804 ID=EMLSAG00000000038-682804|Name=EMLSAG00000000038|organism=Lepeophtheirus salmonis|type=gene|length=2756bp|location=Sequence derived from alignment at LSalAtl2s1006:37164..39919- (Lepeophtheirus salmonis)
ATGTGGTCCATTATCAAGGAGTATGTTGGGCATGGGCCATCAGAGATGAT
GTTGGACATTGAGATTGCTGCCATTCAGTCTGTGCAGCAAGTATTACCAG
ATACTTACGTATCAACCTGCTTCTTTCAATTCAATAAAGCAGTGATGGAT
CAGATAGCCAAGAAGGGAGCAAAAACACTTGTGGATCAAGATTTCGAATT
GAGTAGGATTGTTAAAGTTATAATGCCCATAACCTTTGTGCCTCTTCAAT
AAATTGTTCAAGTAAGGGAAGGAACAATTACCATTGGCTTCAGTTCTTGT
GTCAACTTGATCTTATACGGGTGTAGGCCAAGATCTTTTCGCAAAAATCG
CTACAACAATGTCAAAGAGATGCCCAACGATTGAGAACGGCGCGTAAGAG
ACAAATTTGGGTCATCTTGAATTGATACGCTTGCGGCAGCAATATTTTTT
ACACTTCGTGCATTTCTTTGTCTCACTGGCACAGGAACATTATGTAGCGT
GTATATGGACTCAAATTTTTTCACCAAACGTTGAATTGTTGATTTTGCAG
GTCGATTACGTTGACCATAAATTGGTGTTAACGCTCTTTAAGTTTGGATC
AAAGACTCACCACTTTTGTAATAAATTTTAATAATTTTCAAGCGTTGCTC
GAGTGTGTACTGCTCCATGATAAAACTATAATTATTTCTGAGCACAGCTG
TCAAAGAAAAAATAACAAATATGACGTCGTTTTTGAAGCCTATCAACATA
AAATGTGAGCGCTCCTNATAAAACTATAATTATTTCTGAGCACAGCTGTC
AAAGAAAAAATAACAAATATGACGTCGTTTTTTGAAGCCTATCAACATAA
AATGTGAGCGCTCCTATTGAAAACCCCTTTATATGTATGTATATATATAC
AAGACAATACCAGAAATAAGAGAATAAGAAGGAAGGAGACACGAATAAAT
TACAGTATATAAGGTCTGAATGTGTTCATATTCAATTTTCATACATATAA
ATATAGTAAACTGTGAACTAAGATATATGGGATTTGGTACAAATGTCGTG
GATGCATAGGTCATGGATACAAATGTCGCGTATACATAGGMCTGGATACA
AATGTGGCAGAATGAAAAAAGTTAATGTGACGAGAGAGAAACATATCACA
GTCTACTGAAACTACTGGATTGTGACCAAGTCTCATCGAAAAATTTTAAT
CAAAAGATTTTGGACTTTTATATGTAGACTTTTTAATATGAAAGATATTG
AAATTTACAAGAATAAAATAAAGGTCATATCTCATAAAAGAAAAAAAATA
ACTAGTCAACCCCCTTCCCCATGTCTTCCTCGGATGGGATTGTTCCTCCT
TGAATACACGTAGGCAGGGTTATAGAACCATAAAAATATATTAGGGCACT
TCCATTCAAGTGTCCATTTCCGAAACATCGAAAAAGGTCAAACATTTAAT
GTTTCAGGCTTATCTATATCCCAATAAGTTTTACTAAAATATGTATATTC
CATTTCCTAATTAAAATCAACGCCTTGTCAATGTTAAGCGTAGTTTCCAA
ATGTATCTCTGAAAGTAACATCCTTAACACTGGAATTGCCTATTAACTCT
AGCCATCATTTTAAAACTATATAAATAACTTATTATTTAGTTTTTATTGC
AATAATAACTGAAATTTTACATTTAGGACAATGGAAGTCAAAAAATGGTT
AAATCCATATTTGAAATCATTAATTCATTGCTCTGATAAAAATGAATTTG
TTGAATCAGGGAATTGAGTTAAATTAATTCCCCTAGTCCAAGGTCAATGT
ATTTCTATTAACCTTGTTTCAGTCTAAATGGGGAAAAGAGCCCTCCCCGG
TGACCGTTGATCACTCCAAAATCATGTCAGTTCATAACTATAAATAAGGC
TTTCATGTGACGTTTCAACATTGTTGATATATGCCATTTTGAGGGCCAAA
CAATCAAGTTTTATAGCAATGAAACTATATTCATATTAATGAAGATAGTG
TGAACTATTGTATCTCAAAATGAGACCAAAAAGTAAAAGGACAAAGGAAA
TTTTATCCGTCTATTGACTTGTTTTATTAAACATGTTTGATCCTAAAATG
TATTACGAATATGTTACTACATCGTTATACAATCTTATTTCCATATGGTA
GATATAAATCAAATATTATAATGAAAAGAATAACATATTTTCCCCAAATG
ATCATACTTTTTTTGTGCTTAATCGATCCAAAAAAAATTGTACAGTTTTA
AACATTTCATAAGGATTTTCAGTACATATTGACCACATTATATTCAAATA
TCACTGACATCATCTACTTTTCAATGCAGATATAAAGTCTTTTTTTATTC
TTAATCCCATTTGATGAAGTTTCATCAAAATCTATTCGATTTTTTTTTCA
TTTCATCTAGTAAAAATATCACCTTAAAGCCCCCCAGATAGCGTCTTTCT
CAATTATGGTGCAATTTATGACGTGAATGAAAACACCCCAAGGACAAGTA
GCGACATCTACATAAACAATTCAACCTGAGAAGAAACACTAACAGAATAA
ATTTACCAGGATAAATAAAAATATAATAATTATTATAAATAAATATTCCA
AGACTGAGCAAAATAATTGGGGATTTCACTTTGTCGTGGATTACCAGTAT
CCATCTCATACTAGTAATTACGGATTTAATCATTATGTGAATATTATTTA
GATCAATAATATACTTGACAATTATATTTACAGTTCTTGAATTGGACGTT
TGTTGA
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