EMLSAG00000000083, EMLSAG00000000083-682849 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000083
Unique NameEMLSAG00000000083-682849
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000083 vs. C. finmarchicus
Match: gi|592860592|gb|GAXK01096970.1| (TSA: Calanus finmarchicus comp55077_c12_seq6 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 2.664e+0
Identity = 17/52 (32.69%), Postives = 26/52 (50.00%), Query Frame = 0 
Query:  119 HHHLSHFWQCICILKQDFQTRSHLKVIWNGEICLSVNDISQNFAIPRNFIKD 170
            HH LS +W CI +L    + R+H   ++ G +   V  IS ++    N I D
Sbjct:  120 HHALSRYWCCIDLLSWRTKHRTHTHSLYTG*VQYYVTLISCSYIYRHNTIAD 275
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BLAST of EMLSAG00000000083 vs. C. finmarchicus
Match: gi|592935498|gb|GAXK01023055.1| (TSA: Calanus finmarchicus comp3306768_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.821e+0
Identity = 17/43 (39.53%), Postives = 22/43 (51.16%), Query Frame = 0 
Query:  184 NEVYMFRGMVIIGFCSSKLLEQNTLHEFFVWNHAPWASDIYQW 226
            N  YM +GM+I G C S  L Q  L    V   +P+A  +Y W
Sbjct:  182 NTKYMTKGMIITGLCYSNALSQYLL----VMTKSPYAQ-VYNW 295
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BLAST of EMLSAG00000000083 vs. C. finmarchicus
Match: gi|592950118|gb|GAXK01008435.1| (TSA: Calanus finmarchicus comp646207_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.612e+0
Identity = 24/107 (22.43%), Postives = 43/107 (40.19%), Query Frame = 0 
Query:   55 VTNTIMNDESLMKNLTFC-----------------FKFNLFHDVPQTIFFGPHISFWIDSFIKKAAVLRFQSKNEYLIPFKHHHLSHFWQCICILKQDFQTRSHLKV 144
            + N + +DE+L  N+T C                  K +   D P T+F+   +SFW  +F++      ++ KN          L+H W C+   ++D + R     
Sbjct: 1380 IANEVCSDEAL--NITMCPLCEKCDNWPLHQSCGYTKVSYLFDHPGTVFYAVFMSFWAVTFLE-----YWKRKNA--------SLAHHWDCMGFQEEDERPRPQFAA 1655
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BLAST of EMLSAG00000000083 vs. L. salmonis peptides
Match: EMLSAP00000000083 (pep:novel supercontig:LSalAtl2s:LSalAtl2s10114:523:1466:-1 gene:EMLSAG00000000083 transcript:EMLSAT00000000083 description:"maker-LSalAtl2s10114-augustus-gene-0.2")

HSP 1 Score: 498.819 bits (1283), Expect = 1.574e-180
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0 
Query:    1 MKTRWITLLLFIIYLKTAFLKFNLFKFKWIKINSAIEFNFPLKKVSLQDITAKLVTNTIMNDESLMKNLTFCFKFNLFHDVPQTIFFGPHISFWIDSFIKKAAVLRFQSKNEYLIPFKHHHLSHFWQCICILKQDFQTRSHLKVIWNGEICLSVNDISQNFAIPRNFIKDLTLGGRAPNLVHKNEVYMFRGMVIIGFCSSKLLEQNTLHEFFVWNHAPWASDIYQWGSNISEFKIGKYGKITKV 244
            MKTRWITLLLFIIYLKTAFLKFNLFKFKWIKINSAIEFNFPLKKVSLQDITAKLVTNTIMNDESLMKNLTFCFKFNLFHDVPQTIFFGPHISFWIDSFIKKAAVLRFQSKNEYLIPFKHHHLSHFWQCICILKQDFQTRSHLKVIWNGEICLSVNDISQNFAIPRNFIKDLTLGGRAPNLVHKNEVYMFRGMVIIGFCSSKLLEQNTLHEFFVWNHAPWASDIYQWGSNISEFKIGKYGKITKV
Sbjct:    1 MKTRWITLLLFIIYLKTAFLKFNLFKFKWIKINSAIEFNFPLKKVSLQDITAKLVTNTIMNDESLMKNLTFCFKFNLFHDVPQTIFFGPHISFWIDSFIKKAAVLRFQSKNEYLIPFKHHHLSHFWQCICILKQDFQTRSHLKVIWNGEICLSVNDISQNFAIPRNFIKDLTLGGRAPNLVHKNEVYMFRGMVIIGFCSSKLLEQNTLHEFFVWNHAPWASDIYQWGSNISEFKIGKYGKITKV 244
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BLAST of EMLSAG00000000083 vs. L. salmonis peptides
Match: EMLSAP00000002098 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1394:65377:66676:-1 gene:EMLSAG00000002098 transcript:EMLSAT00000002098 description:"maker-LSalAtl2s1394-augustus-gene-0.8")

HSP 1 Score: 54.299 bits (129), Expect = 6.528e-9
Identity = 46/130 (35.38%), Postives = 59/130 (45.38%), Query Frame = 0 
Query:   69 LTFCFKFNLFHDVPQTIFFGPHISFWIDSFIKKAAVLRFQSKNEYLIPFKHHHLSHF-WQCICILKQD----FQTRSHLKVIWNGEICLSVNDISQNFAIPRNFIKDLTLGGRAPNLVHKNEVYMFRGMV 193
            ++FC KF++    PQ IF+   ISFWIDS   + A+LR   K E+LI + H+ L  F W  ICI K      F    H K   N EIC         F +    I    LGG      +K     FRG +
Sbjct:   48 ISFCLKFSVEFVQPQPIFWSSEISFWIDSIYYQVAILRL-GKCEHLIQY-HNLLKPFQWNRICIKKSKSGAVFAWNVHTKFKLNTEIC--------EFQLTETHINSFILGGHLKK-TYKEGFMNFRGKI 166
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000083 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000083 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592860592|gb|GAXK01096970.1|2.664e+032.69TSA: Calanus finmarchicus comp55077_c12_seq6 trans... [more]
gi|592935498|gb|GAXK01023055.1|2.821e+039.53TSA: Calanus finmarchicus comp3306768_c0_seq1 tran... [more]
gi|592950118|gb|GAXK01008435.1|3.612e+022.43TSA: Calanus finmarchicus comp646207_c0_seq1 trans... [more]
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BLAST of EMLSAG00000000083 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000000831.574e-180100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s10114:523... [more]
EMLSAP000000020986.528e-935.38pep:novel supercontig:LSalAtl2s:LSalAtl2s1394:6537... [more]
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BLAST of EMLSAG00000000083 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000083 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000083 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000083 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s10114supercontigLSalAtl2s10114:523..1466 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s10114-augustus-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000083 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000083EMLSAT00000000083-695930Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s10114:523..1466-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000083-682849 ID=EMLSAG00000000083-682849|Name=EMLSAG00000000083|organism=Lepeophtheirus salmonis|type=gene|length=944bp|location=Sequence derived from alignment at LSalAtl2s10114:523..1466- (Lepeophtheirus salmonis)
ATGAAAACTCGTTGGATAACCTTATTACTCTTTATTATCTACTTGAAGAC
CGCCTTCCTTAAATTTAATGTAAGAATTCAATGTTCAAATATGCATCCTC
TATTATTTCTAAATATATAAATATTTTTTTGTTTCATTATAGCTTTTTAA
ATTCAAATGGATTAAAATAAACTCTGCTATTGAATTCAATTTCCCTTTAA
AAAAGGTAAGCCTCCAAGATATTACGGCAAAACTTGTCACAAATACAATT
ATGAATGATGAGAGTTTAATGAAGAATCTAACATTTTGTTTCAAATTCAA
CTTGTTCCATGACGTTCCTCAAACTATTTTTTTTGGACCTCACATCTCCT
TTTGGATTGATTCCTTCATTAAAAAGGCTGCAGTTTTAAGATTTCAGAGT
AAAAATGAGTATTTAATTCCATTCAAACACCATCATTTAAGTCATTTCTG
GCAATGCATATGTATATTGAAGCAAGACTTCCAAACGAGTAAGTTATTCA
TTGTAATGAGTCCCACATAAAATACAATTCCTTCTTAATATGATTTTGTT
TGCTCTGAGTCAGAATCTACTAAAAAGGAAACAATATTTAATTCATGGTT
CAATATTGTTTTCATTATAATACTTAGGAAGTCATTTAAAAGTCATTTGG
AATGGAGAAATCTGTTTGAGCGTCAATGACATTTCACAAAACTTTGCCAT
TCCACGTAACTTCATCAAAGACCTTACCTTAGGGGGAAGGGCTCCAAATC
TAGTCCATAAAAACGAGGTGTACATGTTTCGAGGTATGGTTATTATAGGA
TTTTGTTCCTCTAAGCTTTTAGAACAAAATACTCTCCACGAGTTTTTTGT
CTGGAATCACGCCCCTTGGGCATCAGATATATATCAATGGGGATCAAATA
TTTCAGAATTTAAGATAGGAAAATACGGGAAAATTACCAAAGTG
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