EMLSAG00000000129, EMLSAG00000000129-682895 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000129
Unique NameEMLSAG00000000129-682895
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000129 vs. C. finmarchicus
Match: gi|592913790|gb|GAXK01044585.1| (TSA: Calanus finmarchicus comp242954_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 42.3578 bits (98), Expect = 4.855e-5
Identity = 18/53 (33.96%), Postives = 33/53 (62.26%), Query Frame = 0 
Query:    5 DPMFNETLNFEVPPSHLDSSTFVILINQKVNSIEMRELDSIAEDTFENIHEEE 57
            DP+FNETLNFEV P  LD+S F++ +  +   ++M  ++ + +    +  ++E
Sbjct:  397 DPVFNETLNFEVAPGQLDNSRFLVTLWNRRQVMDMAVMEDMKDAVNHDSSDQE 555
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BLAST of EMLSAG00000000129 vs. C. finmarchicus
Match: gi|592913788|gb|GAXK01044587.1| (TSA: Calanus finmarchicus comp242954_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 41.9726 bits (97), Expect = 5.684e-5
Identity = 18/53 (33.96%), Postives = 33/53 (62.26%), Query Frame = 0 
Query:    5 DPMFNETLNFEVPPSHLDSSTFVILINQKVNSIEMRELDSIAEDTFENIHEEE 57
            DP+FNETLNFEV P  LD+S F++ +  +   ++M  ++ + +    +  ++E
Sbjct:  355 DPVFNETLNFEVAPGQLDNSRFLVTLWNRRQVMDMTIMEDMKDAVNHDSSDQE 513
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BLAST of EMLSAG00000000129 vs. C. finmarchicus
Match: gi|592913789|gb|GAXK01044586.1| (TSA: Calanus finmarchicus comp242954_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 4.365e-4
Identity = 18/30 (60.00%), Postives = 23/30 (76.67%), Query Frame = 0 
Query:    5 DPMFNETLNFEVPPSHLDSSTFVI-LINQK 33
            DP+FNETLNFEV P  L+ S F++ L N+K
Sbjct:  457 DPVFNETLNFEVAPGQLEVSRFLVTLCNRK 546
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BLAST of EMLSAG00000000129 vs. C. finmarchicus
Match: gi|592913787|gb|GAXK01044588.1| (TSA: Calanus finmarchicus comp242954_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 37.7354 bits (86), Expect = 1.434e-3
Identity = 19/52 (36.54%), Postives = 30/52 (57.69%), Query Frame = 0 
Query:    5 DPMFNETLNFEVPPSHLDSSTFVILINQKVNSIEMRELDSIAEDTFENIHEE 56
            DP+FNETLNFEV P  L+ S F++ +  +   ++      I ED  E  +++
Sbjct:   12 DPVFNETLNFEVAPGQLEVSRFLVTLCNRRQVVDTM----IMEDGMEGTNQD 155
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BLAST of EMLSAG00000000129 vs. C. finmarchicus
Match: gi|592922741|gb|GAXK01035648.1| (TSA: Calanus finmarchicus comp1372655_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 6.050e+0
Identity = 14/26 (53.85%), Postives = 15/26 (57.69%), Query Frame = 0 
Query:   25 TFVILINQKVNSIEMRELDSIAEDTF 50
            T  IL N  VNS+  R  DSI  DTF
Sbjct:  117 TLAILSNYSVNSL*FRLTDSIYVDTF 194
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BLAST of EMLSAG00000000129 vs. C. finmarchicus
Match: gi|592922742|gb|GAXK01035647.1| (TSA: Calanus finmarchicus comp1372655_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 6.231e+0
Identity = 14/26 (53.85%), Postives = 15/26 (57.69%), Query Frame = 0 
Query:   25 TFVILINQKVNSIEMRELDSIAEDTF 50
            T  IL N  VNS+  R  DSI  DTF
Sbjct:  117 TLAILSNYSVNSL*FRLTDSIYVDTF 194
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BLAST of EMLSAG00000000129 vs. C. finmarchicus
Match: gi|592899736|gb|GAXK01058639.1| (TSA: Calanus finmarchicus comp589864_c1_seq6 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 7.899e+0
Identity = 11/34 (32.35%), Postives = 23/34 (67.65%), Query Frame = 0 
Query:   21 LDSSTFVILINQKVNSIEMRELDSIAEDTFENIH 54
            +DS +FV + N K  ++E  ++  + ++TF+N+H
Sbjct:  216 MDSRSFVEMRNLKCLTLEGNKISKLEDETFQNLH 317
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BLAST of EMLSAG00000000129 vs. C. finmarchicus
Match: gi|592899739|gb|GAXK01058636.1| (TSA: Calanus finmarchicus comp589864_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 8.179e+0
Identity = 11/34 (32.35%), Postives = 23/34 (67.65%), Query Frame = 0 
Query:   21 LDSSTFVILINQKVNSIEMRELDSIAEDTFENIH 54
            +DS +FV + N K  ++E  ++  + ++TF+N+H
Sbjct:  301 MDSRSFVEMRNLKCLTLEGNKISKLEDETFQNLH 402
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BLAST of EMLSAG00000000129 vs. C. finmarchicus
Match: gi|592899737|gb|GAXK01058638.1| (TSA: Calanus finmarchicus comp589864_c1_seq5 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 8.692e+0
Identity = 11/34 (32.35%), Postives = 23/34 (67.65%), Query Frame = 0 
Query:   21 LDSSTFVILINQKVNSIEMRELDSIAEDTFENIH 54
            +DS +FV + N K  ++E  ++  + ++TF+N+H
Sbjct:  243 MDSRSFVEMRNLKCLTLEGNKISKLEDETFQNLH 344
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BLAST of EMLSAG00000000129 vs. L. salmonis peptides
Match: EMLSAP00000000129 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1020:59122:59626:-1 gene:EMLSAG00000000129 transcript:EMLSAT00000000129 description:"maker-LSalAtl2s1020-snap-gene-0.23")

HSP 1 Score: 129.413 bits (324), Expect = 1.214e-40
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 
Query:    1 MGKRDPMFNETLNFEVPPSHLDSSTFVILINQKVNSIEMRELDSIAEDTFENIHEEERGSKDT 63
            MGKRDPMFNETLNFEVPPSHLDSSTFVILINQKVNSIEMRELDSIAEDTFENIHEEERGSKDT
Sbjct:    1 MGKRDPMFNETLNFEVPPSHLDSSTFVILINQKVNSIEMRELDSIAEDTFENIHEEERGSKDT 63
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000129 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000129 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 9
Match NameE-valueIdentityDescription
gi|592913790|gb|GAXK01044585.1|4.855e-533.96TSA: Calanus finmarchicus comp242954_c1_seq1 trans... [more]
gi|592913788|gb|GAXK01044587.1|5.684e-533.96TSA: Calanus finmarchicus comp242954_c1_seq3 trans... [more]
gi|592913789|gb|GAXK01044586.1|4.365e-460.00TSA: Calanus finmarchicus comp242954_c1_seq2 trans... [more]
gi|592913787|gb|GAXK01044588.1|1.434e-336.54TSA: Calanus finmarchicus comp242954_c1_seq4 trans... [more]
gi|592922741|gb|GAXK01035648.1|6.050e+053.85TSA: Calanus finmarchicus comp1372655_c0_seq2 tran... [more]
gi|592922742|gb|GAXK01035647.1|6.231e+053.85TSA: Calanus finmarchicus comp1372655_c0_seq1 tran... [more]
gi|592899736|gb|GAXK01058639.1|7.899e+032.35TSA: Calanus finmarchicus comp589864_c1_seq6 trans... [more]
gi|592899739|gb|GAXK01058636.1|8.179e+032.35TSA: Calanus finmarchicus comp589864_c1_seq3 trans... [more]
gi|592899737|gb|GAXK01058638.1|8.692e+032.35TSA: Calanus finmarchicus comp589864_c1_seq5 trans... [more]
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BLAST of EMLSAG00000000129 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000001291.214e-40100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1020:5912... [more]
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BLAST of EMLSAG00000000129 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000129 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000129 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000129 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1020supercontigLSalAtl2s1020:59122..59626 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1020-snap-gene-0.23
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000129 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000129EMLSAT00000000129-695976Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1020:59122..59626-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000129-682895 ID=EMLSAG00000000129-682895|Name=EMLSAG00000000129|organism=Lepeophtheirus salmonis|type=gene|length=505bp|location=Sequence derived from alignment at LSalAtl2s1020:59122..59626- (Lepeophtheirus salmonis)
ATGGGAAAACGAGATCCGATGTTTAATGAGACACTTAACTTTGAGGTTCC
ACCTTCACATCTAGATTCCTCGACTTTTGTTATCCTTATAAACCAAAAGG
TCAACTCCATCGAAATGCGAGTAAGCATTGTGTCCTGGAAATTTGCATTG
ACATCAAATATATTTTTGTAATCATATAGGAATTGGACTCTATTGCAGAG
GATACATTTGAAAACATTCACGAAGAGGAGCGGGGATCAAAGGATGTTTG
TCTTGGCCGGATTTGTATTGGGCGTCGTGTAAATGGATTAAAGGAGCGAG
CTCACTGGGTAAATGTAGTACAAAATCCAAGAAAGGTTTTTTCTACATGG
CAAACATTGTATTAAACCAACATGCCCTTTAAAATTAGTCTAGGTTTTTT
TTTTTTTTTGTGTCATTTCCTATCAGAAAAGATGCAAATTCAGATATTAC
TCTGTATCAAATTTGTAATACAGTTAACATATATACAATATATGTTTAGA
CCTAA
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