EMLSAG00000000215, EMLSAG00000000215-682981 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000215
Unique NameEMLSAG00000000215-682981
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000215 vs. C. finmarchicus
Match: gi|592879083|gb|GAXK01078818.1| (TSA: Calanus finmarchicus comp489687_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 43.5134 bits (101), Expect = 5.281e-4
Identity = 24/64 (37.50%), Postives = 35/64 (54.69%), Query Frame = 0
Query:  196 ERCFERLVCEYKSPTTQ--MEELEQQVTEITLRILMSKSHLDESLMDRLNRASTYGIKNVSSCQ 257
            ++C E+LVC Y  P ++  +  +E+ V  I L  LMS   L  SL  RL  A+  G ++V  CQ
Sbjct:  590 DQCLEQLVCTYGQPPSKGALSGIERDVVSIILYNLMSNKMLSSSLKSRLRAAAKVG-RDVGQCQ 778          
BLAST of EMLSAG00000000215 vs. C. finmarchicus
Match: gi|592830735|gb|GAXK01126809.1| (TSA: Calanus finmarchicus comp46551_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 1.047e-2
Identity = 19/65 (29.23%), Postives = 34/65 (52.31%), Query Frame = 0
Query:  186 YMSCDS-QHILERCFERLVCEYKSPTTQMEELEQQVTEITLRILMSKSHLDESLMDRLNRASTYG 249
            Y+SC     +   C +R+VCEY +    +++ E+ V  I L  +M+  ++ +   DRL  A+  G
Sbjct:  289 YLSCSGYTEMTNHCLDRVVCEYANNNNTVKQEERDVISIVLYNIMANEYVSDGYKDRLRVAARSG 483          
BLAST of EMLSAG00000000215 vs. C. finmarchicus
Match: gi|592830728|gb|GAXK01126816.1| (TSA: Calanus finmarchicus comp46551_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 1.110e-2
Identity = 19/65 (29.23%), Postives = 34/65 (52.31%), Query Frame = 0
Query:  186 YMSCDS-QHILERCFERLVCEYKSPTTQMEELEQQVTEITLRILMSKSHLDESLMDRLNRASTYG 249
            Y+SC     +   C +R+VCEY +    +++ E+ V  I L  +M+  ++ +   DRL  A+  G
Sbjct:   64 YLSCSGYTEMTNHCLDRVVCEYANNNNTVKQEERDVISIVLYNIMANEYVSDGYKDRLRVAARSG 258          
BLAST of EMLSAG00000000215 vs. C. finmarchicus
Match: gi|592833484|gb|GAXK01124060.1| (TSA: Calanus finmarchicus comp256874_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 38.1206 bits (87), Expect = 1.876e-2
Identity = 17/53 (32.08%), Postives = 29/53 (54.72%), Query Frame = 0
Query:  197 RCFERLVCEYKSPTTQMEELEQQVTEITLRILMSKSHLDESLMDRLNRASTYG 249
            +C + LVCE+  P +    +E+    + L  L+S SHL E++  R+  A+  G
Sbjct:  528 QCLDLLVCEFSRPQSGYNSVEKDTITMVLYHLLSSSHLPETIKSRIRVAAGLG 686          
BLAST of EMLSAG00000000215 vs. L. salmonis peptides
Match: EMLSAP00000000215 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1031:118223:119431:-1 gene:EMLSAG00000000215 transcript:EMLSAT00000000215 description:"maker-LSalAtl2s1031-augustus-gene-1.32")

HSP 1 Score: 568.926 bits (1465), Expect = 0.000e+0
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0
Query:    1 MRSFTIFVNQTLFVIVLSVFAVQVSLGAGKREFSKRNKGFAHRDGGGGGGGGGGYAYGNSGFSGSGXGGGGGGGYGGGGGHGGGGGYGGGGGSPDKFKDKLSLLPLLALAPLALLALPLLFPTTTMVIPPVIPMMMGKRKKRAIGSEEEQILRSFLYEALKEENTHFKSNSSTSRSLSPSAILSKYMSCDSQHILERCFERLVCEYKSPTTQMEELEQQVTEITLRILMSKSHLDESLMDRLNRASTYGIKNVSSCQKRYPCDVDVSSMTRVRKTKNSTQFA 282
            MRSFTIFVNQTLFVIVLSVFAVQVSLGAGKREFSKRNKGFAHRDGGGGGGGGGGYAYGNSGFSGSGXGGGGGGGYGGGGGHGGGGGYGGGGGSPDKFKDKLSLLPLLALAPLALLALPLLFPTTTMVIPPVIPMMMGKRKKRAIGSEEEQILRSFLYEALKEENTHFKSNSSTSRSLSPSAILSKYMSCDSQHILERCFERLVCEYKSPTTQMEELEQQVTEITLRILMSKSHLDESLMDRLNRASTYGIKNVSSCQKRYPCDVDVSSMTRVRKTKNSTQFA
Sbjct:    1 MRSFTIFVNQTLFVIVLSVFAVQVSLGAGKREFSKRNKGFAHRDGGGGGGGGGGYAYGNSGFSGSGXGGGGGGGYGGGGGHGGGGGYGGGGGSPDKFKDKLSLLPLLALAPLALLALPLLFPTTTMVIPPVIPMMMGKRKKRAIGSEEEQILRSFLYEALKEENTHFKSNSSTSRSLSPSAILSKYMSCDSQHILERCFERLVCEYKSPTTQMEELEQQVTEITLRILMSKSHLDESLMDRLNRASTYGIKNVSSCQKRYPCDVDVSSMTRVRKTKNSTQFA 282          
BLAST of EMLSAG00000000215 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1530_size37188-snap-gene-0.7 (protein:Tk08448 transcript:maker-scaffold1530_size37188-snap-gene-0.7-mRNA-1 annotation:"hypothetical protein DAPPUDRAFT_96721")

HSP 1 Score: 52.373 bits (124), Expect = 3.799e-8
Identity = 50/207 (24.15%), Postives = 84/207 (40.58%), Query Frame = 0
Query:   76 GGGGGHGGGGGYGGGGGSPDKFKDKLSLLPLLALAPLALLALPLLFPTTTMVI------PPVIPMMMGKRKKRAIGS----------EEEQILRSFLYEALKEENTHFKSNSSTSRSLSPSAILSKYMSCD----SQHILERCFERLVCEYKSPTTQMEELEQQVTEITLRILMSKSHLDESLMDRLNRASTYGIKNVSSCQKRYPC 262
            G   GH  GG   G                   + PLALL  PL               P ++ + + KR++R++            +E QIL  +L    +E  T ++S            +++ Y++C     S +    C +R+ CEY S  + +   ++ V  I L  +MS + +D+S  DRL  A+ +G    +SC+  Y C
Sbjct:   83 GYSNGHDDGGSDNG-------------------INPLALLVAPLAGIALLSAAAAVALNPFLVQISVSKRRRRSLLERPTSDVAHQLQELQILEEYLGNVPQE--TSYQS-----------KLMASYLTCSGFTSSSNF---CMDRVFCEYGSTQSSLGSRDRNVIAIILYNIMSNTQIDQSFKDRLKTAAQFGRDGSNSCRNLYQC 254          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000215 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000215 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592879083|gb|GAXK01078818.1|5.281e-437.50TSA: Calanus finmarchicus comp489687_c0_seq1 trans... [more]
gi|592830735|gb|GAXK01126809.1|1.047e-229.23TSA: Calanus finmarchicus comp46551_c0_seq1 transc... [more]
gi|592830728|gb|GAXK01126816.1|1.110e-229.23TSA: Calanus finmarchicus comp46551_c1_seq1 transc... [more]
gi|592833484|gb|GAXK01124060.1|1.876e-232.08TSA: Calanus finmarchicus comp256874_c1_seq1 trans... [more]
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BLAST of EMLSAG00000000215 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000002150.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1031:1182... [more]
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BLAST of EMLSAG00000000215 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000215 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000215 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000215 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold1530_size37188-snap-gene-0.73.799e-824.15protein:Tk08448 transcript:maker-scaffold1530_size... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1031supercontigLSalAtl2s1031:118223..119431 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1031-augustus-gene-1.32
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000215 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000215EMLSAT00000000215-696062Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1031:118223..119431-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000215-682981 ID=EMLSAG00000000215-682981|Name=EMLSAG00000000215|organism=Lepeophtheirus salmonis|type=gene|length=1209bp|location=Sequence derived from alignment at LSalAtl2s1031:118223..119431- (Lepeophtheirus salmonis)
ATGAGATCCTTCACAATATTTGTCAATCAAACAGTAAATCATTTTCACAT TATAAAAAACTATATCTATAGAAATAAGTATTGTTTTTCTTTTTATTTTA TAGTTATTTGTAATTGTCCTAAGCGTGTTTGCGGTTCAAGTCTCTTTGGG AGCTGGAAAAAGGGAGTTCTCGAAGAGGAACAAGGGATTTGGTGAGTTAA TATATTTGACGAGTATATCAGAGTACAAAATACATATCAAAAATTATCCA ATTAGAGATAGATATTGAATATTTTGAAATAAAGTTATTCTATTGCATTT CAGCTCATAGGGATGGAGGAGGAGGCGGTGGTGGAGGAGGAGGCTACGCC TATGGTAACTCTGGATTCAGCGGAAGCGGGKATGGAGGAGGTGGTGGTGG CGGCTATGGTGGAGGAGGTGGACATGGCGGCGGGGGTGGATATGGCGGCG GTGGAGGTAAGTTTGTGAACGAGTACGATGAATGCTCAACATTAGTTAAT ACCACTTAATTAGTTATGTATACATTGAATAATCATCCATTCCATAGGTT CTCCTGATAAGTTTAAAGACAAACTAAGTCTTCTGCCCCTACTGGCTCTT GCTCCACTCGCTCTTTTGGCTCTTCCTTTGTTATTCCCCACGACAACAAT GGTCATTCCTCCAGTTATACCCATGATGATGGGTAAAAGGAAGAAACGAG CCATTGGGAGTGAAGAGGAGCAGATCCTCCGGTCCTTTCTCTACGAAGCC CTCAAGGAAGAGAACACACATTTCAAATCCAACAGTAGCACATCAAGATC CTTATCCCCTAGCGCCATTCTATCAAAGTACATGTCCTGTGATTCTCAAC ACATACTAGAGCGCTGCTTTGAAAGACTCGTCTGTGAATACAAGAGTCCT ACAACTCAAATGGAAGAGCTTGAGCAGCAAGTGACAGAAATGTAAGAGAA CTTGAGGGTTTTTGCATGTCATAGTTATACATCAGCTGCTTAGTTTCTTT AATTTATATTCTACTATTCCTTTTTTAGTACGTTAAGAATACTCATGTCA AAGAGTCATTTGGATGAGTCTCTGATGGATCGATTGAATCGGGCATCTAC CTATGGAATCAAAAACGTGAGCTCTTGTCAGAAAAGATATCCTTGTGATG TTGATGTGTCCAGTATGACGAGAGTTAGGAAGACTAAGAACTCTACTCAA TTTGCCTAG
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