EMLSAG00000000215, EMLSAG00000000215-682981 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000215 vs. C. finmarchicus
Match: gi|592879083|gb|GAXK01078818.1| (TSA: Calanus finmarchicus comp489687_c0_seq1 transcribed RNA sequence) HSP 1 Score: 43.5134 bits (101), Expect = 5.281e-4 Identity = 24/64 (37.50%), Postives = 35/64 (54.69%), Query Frame = 0 Query: 196 ERCFERLVCEYKSPTTQ--MEELEQQVTEITLRILMSKSHLDESLMDRLNRASTYGIKNVSSCQ 257 ++C E+LVC Y P ++ + +E+ V I L LMS L SL RL A+ G ++V CQ Sbjct: 590 DQCLEQLVCTYGQPPSKGALSGIERDVVSIILYNLMSNKMLSSSLKSRLRAAAKVG-RDVGQCQ 778
BLAST of EMLSAG00000000215 vs. C. finmarchicus
Match: gi|592830735|gb|GAXK01126809.1| (TSA: Calanus finmarchicus comp46551_c0_seq1 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 1.047e-2 Identity = 19/65 (29.23%), Postives = 34/65 (52.31%), Query Frame = 0 Query: 186 YMSCDS-QHILERCFERLVCEYKSPTTQMEELEQQVTEITLRILMSKSHLDESLMDRLNRASTYG 249 Y+SC + C +R+VCEY + +++ E+ V I L +M+ ++ + DRL A+ G Sbjct: 289 YLSCSGYTEMTNHCLDRVVCEYANNNNTVKQEERDVISIVLYNIMANEYVSDGYKDRLRVAARSG 483
BLAST of EMLSAG00000000215 vs. C. finmarchicus
Match: gi|592830728|gb|GAXK01126816.1| (TSA: Calanus finmarchicus comp46551_c1_seq1 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 1.110e-2 Identity = 19/65 (29.23%), Postives = 34/65 (52.31%), Query Frame = 0 Query: 186 YMSCDS-QHILERCFERLVCEYKSPTTQMEELEQQVTEITLRILMSKSHLDESLMDRLNRASTYG 249 Y+SC + C +R+VCEY + +++ E+ V I L +M+ ++ + DRL A+ G Sbjct: 64 YLSCSGYTEMTNHCLDRVVCEYANNNNTVKQEERDVISIVLYNIMANEYVSDGYKDRLRVAARSG 258
BLAST of EMLSAG00000000215 vs. C. finmarchicus
Match: gi|592833484|gb|GAXK01124060.1| (TSA: Calanus finmarchicus comp256874_c1_seq1 transcribed RNA sequence) HSP 1 Score: 38.1206 bits (87), Expect = 1.876e-2 Identity = 17/53 (32.08%), Postives = 29/53 (54.72%), Query Frame = 0 Query: 197 RCFERLVCEYKSPTTQMEELEQQVTEITLRILMSKSHLDESLMDRLNRASTYG 249 +C + LVCE+ P + +E+ + L L+S SHL E++ R+ A+ G Sbjct: 528 QCLDLLVCEFSRPQSGYNSVEKDTITMVLYHLLSSSHLPETIKSRIRVAAGLG 686
BLAST of EMLSAG00000000215 vs. L. salmonis peptides
Match: EMLSAP00000000215 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1031:118223:119431:-1 gene:EMLSAG00000000215 transcript:EMLSAT00000000215 description:"maker-LSalAtl2s1031-augustus-gene-1.32") HSP 1 Score: 568.926 bits (1465), Expect = 0.000e+0 Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0 Query: 1 MRSFTIFVNQTLFVIVLSVFAVQVSLGAGKREFSKRNKGFAHRDGGGGGGGGGGYAYGNSGFSGSGXGGGGGGGYGGGGGHGGGGGYGGGGGSPDKFKDKLSLLPLLALAPLALLALPLLFPTTTMVIPPVIPMMMGKRKKRAIGSEEEQILRSFLYEALKEENTHFKSNSSTSRSLSPSAILSKYMSCDSQHILERCFERLVCEYKSPTTQMEELEQQVTEITLRILMSKSHLDESLMDRLNRASTYGIKNVSSCQKRYPCDVDVSSMTRVRKTKNSTQFA 282 MRSFTIFVNQTLFVIVLSVFAVQVSLGAGKREFSKRNKGFAHRDGGGGGGGGGGYAYGNSGFSGSGXGGGGGGGYGGGGGHGGGGGYGGGGGSPDKFKDKLSLLPLLALAPLALLALPLLFPTTTMVIPPVIPMMMGKRKKRAIGSEEEQILRSFLYEALKEENTHFKSNSSTSRSLSPSAILSKYMSCDSQHILERCFERLVCEYKSPTTQMEELEQQVTEITLRILMSKSHLDESLMDRLNRASTYGIKNVSSCQKRYPCDVDVSSMTRVRKTKNSTQFA Sbjct: 1 MRSFTIFVNQTLFVIVLSVFAVQVSLGAGKREFSKRNKGFAHRDGGGGGGGGGGYAYGNSGFSGSGXGGGGGGGYGGGGGHGGGGGYGGGGGSPDKFKDKLSLLPLLALAPLALLALPLLFPTTTMVIPPVIPMMMGKRKKRAIGSEEEQILRSFLYEALKEENTHFKSNSSTSRSLSPSAILSKYMSCDSQHILERCFERLVCEYKSPTTQMEELEQQVTEITLRILMSKSHLDESLMDRLNRASTYGIKNVSSCQKRYPCDVDVSSMTRVRKTKNSTQFA 282
BLAST of EMLSAG00000000215 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1530_size37188-snap-gene-0.7 (protein:Tk08448 transcript:maker-scaffold1530_size37188-snap-gene-0.7-mRNA-1 annotation:"hypothetical protein DAPPUDRAFT_96721") HSP 1 Score: 52.373 bits (124), Expect = 3.799e-8 Identity = 50/207 (24.15%), Postives = 84/207 (40.58%), Query Frame = 0 Query: 76 GGGGGHGGGGGYGGGGGSPDKFKDKLSLLPLLALAPLALLALPLLFPTTTMVI------PPVIPMMMGKRKKRAIGS----------EEEQILRSFLYEALKEENTHFKSNSSTSRSLSPSAILSKYMSCD----SQHILERCFERLVCEYKSPTTQMEELEQQVTEITLRILMSKSHLDESLMDRLNRASTYGIKNVSSCQKRYPC 262 G GH GG G + PLALL PL P ++ + + KR++R++ +E QIL +L +E T ++S +++ Y++C S + C +R+ CEY S + + ++ V I L +MS + +D+S DRL A+ +G +SC+ Y C Sbjct: 83 GYSNGHDDGGSDNG-------------------INPLALLVAPLAGIALLSAAAAVALNPFLVQISVSKRRRRSLLERPTSDVAHQLQELQILEEYLGNVPQE--TSYQS-----------KLMASYLTCSGFTSSSNF---CMDRVFCEYGSTQSSLGSRDRNVIAIILYNIMSNTQIDQSFKDRLKTAAQFGRDGSNSCRNLYQC 254 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000215 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000215 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 4
BLAST of EMLSAG00000000215 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000215 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000215 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000215 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000215 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1031:118223..119431- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000215-682981 ID=EMLSAG00000000215-682981|Name=EMLSAG00000000215|organism=Lepeophtheirus salmonis|type=gene|length=1209bp|location=Sequence derived from alignment at LSalAtl2s1031:118223..119431- (Lepeophtheirus salmonis)back to top Add to Basket
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