EMLSAG00000000238, EMLSAG00000000238-683004 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000238
Unique NameEMLSAG00000000238-683004
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000238 vs. C. finmarchicus
Match: gi|592957186|gb|GAXK01001370.1| (TSA: Calanus finmarchicus comp4583248_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 1.106e-1
Identity = 16/33 (48.48%), Postives = 21/33 (63.64%), Query Frame = 0
Query:    6 AFVIFNKEEECFEDEIDNIKSQLDLFRFSTSNF 38
            +  I NK  E FE EID+IK QLD+ + S +N 
Sbjct:  106 SHSIQNKSNEVFEKEIDDIKKQLDILKESETNL 204          
BLAST of EMLSAG00000000238 vs. C. finmarchicus
Match: gi|592936422|gb|GAXK01022131.1| (TSA: Calanus finmarchicus comp2510193_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 5.756e+0
Identity = 15/56 (26.79%), Postives = 27/56 (48.21%), Query Frame = 0
Query:   18 EDEIDNIKSQLDLFRFSTSNFLLD-----QCQANLLYFVSGYIASSIIKVLKINIC 68
            ++ I NI  + D+++    N   D        AN  Y +SG+ A  ++K+  + IC
Sbjct:  142 KEPIANITVEEDVYKIKLYNLQTDIEYKISVAANGNYMISGFSAPHLLKISSVPIC 309          
BLAST of EMLSAG00000000238 vs. L. salmonis peptides
Match: EMLSAP00000000238 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1032:181816:186915:1 gene:EMLSAG00000000238 transcript:EMLSAT00000000238 description:"maker-LSalAtl2s1032-augustus-gene-0.8")

HSP 1 Score: 198.749 bits (504), Expect = 8.447e-67
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
Query:    1 MDVSNAFVIFNKEEECFEDEIDNIKSQLDLFRFSTSNFLLDQCQANLLYFVSGYIASSIIKVLKINICECTNFLISEKPVSFYVDFSGEDIDFIKKNSKNC 101
            MDVSNAFVIFNKEEECFEDEIDNIKSQLDLFRFSTSNFLLDQCQANLLYFVSGYIASSIIKVLKINICECTNFLISEKPVSFYVDFSGEDIDFIKKNSKNC
Sbjct:    1 MDVSNAFVIFNKEEECFEDEIDNIKSQLDLFRFSTSNFLLDQCQANLLYFVSGYIASSIIKVLKINICECTNFLISEKPVSFYVDFSGEDIDFIKKNSKNC 101          
BLAST of EMLSAG00000000238 vs. L. salmonis peptides
Match: EMLSAP00000008076 (pep:novel supercontig:LSalAtl2s:LSalAtl2s47:287231:290661:-1 gene:EMLSAG00000008076 transcript:EMLSAT00000008076 description:"augustus-LSalAtl2s47-processed-gene-3.11")

HSP 1 Score: 75.485 bits (184), Expect = 6.309e-17
Identity = 39/91 (42.86%), Postives = 65/91 (71.43%), Query Frame = 0
Query:   12 KEE--ECFEDEIDNIKSQLDLFRFSTSNFLLDQCQANLLYFVSGYIASSIIKVLKINICECTNFLISEKPVSFYVDFSGEDIDFIKKNSKN 100
            KEE  + +E ++  IKS LD + F++SNF +++ Q NL++FVSGYIASSI+ + +I  C+C NFLIS++ ++  ++FS +D   + K+ +N
Sbjct:  727 KEENDDSYEKDMHEIKSILDFYSFASSNFSINELQVNLMFFVSGYIASSIVDIFQIKNCDCINFLISDELITKNIEFSDDDSHILLKSFQN 817          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000238 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000238 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592957186|gb|GAXK01001370.1|1.106e-148.48TSA: Calanus finmarchicus comp4583248_c0_seq1 tran... [more]
gi|592936422|gb|GAXK01022131.1|5.756e+026.79TSA: Calanus finmarchicus comp2510193_c0_seq1 tran... [more]
back to top
BLAST of EMLSAG00000000238 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000002388.447e-67100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1032:1818... [more]
EMLSAP000000080766.309e-1742.86pep:novel supercontig:LSalAtl2s:LSalAtl2s47:287231... [more]
back to top
BLAST of EMLSAG00000000238 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000238 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000238 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000238 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1032supercontigLSalAtl2s1032:181816..186915 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1032-augustus-gene-0.8
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000238 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000238EMLSAT00000000238-696085Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1032:181816..186915+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000238-683004 ID=EMLSAG00000000238-683004|Name=EMLSAG00000000238|organism=Lepeophtheirus salmonis|type=gene|length=5100bp|location=Sequence derived from alignment at LSalAtl2s1032:181816..186915+ (Lepeophtheirus salmonis)
AAAACAATGAGTAGGGTTAACGGTGAATAGTCGATGCTGGGACTATAGAA AGGTAGACTCATACTCATCAGTCATCGCTCCTTTTAATACTATACACTTG GATGAACAGAAAGGGAGGGAAAACGTTGTTTGTTATTATTTATTTGTTAC CACGTTCACAGTCCATTCCCACTTTATTTCAAAAATACCTAGTATTTTTT GTGCTCCGGGCTGTAAGTCGGGTTATCCTGGCCAGCCAAAAGAAGACAAC GTAGTTCTACATAAGCTGCCCCTAAAAGATGGTAATCTCCTACGTAAATG GGTACGAGTAATACCGAGGTTCGTAACATCATTTTATATCCTCAAAGTAT AACTTTTCTATGCATAAAGTATGAATATTCATGTATCGGGAAGCACAGAG ATAGACTAACTCAAGGTATATAGAATAGAAGCTATGTTCTTCTGTAAAAA TACATGATTTGTTATTGAAAAGCGTGGCTGACGAGTGCTTTGCCTGCATT GTCAACTTTAAGAAAGTGGCTTTCAAAGTTTAAATGCCCCCTGGAGTTCA AAAGTTCTTGATATTTTGCAGAAAAAAATGGATGGTAAATTGAACAGATT ATTAAAATTAATAAACAAATAAATATGAAACGTATTTTTACAGAGTTTTC CAAAACGAATGGTCAATTAATACATCTGGGAGTTTTAGCTTTCGATGAAA TGGATATCAAACGAAGCATCGATTATTCACACTCTTTCGATCAAGTATTT GACCCTAACAAGAAGGCTCAGGTGGGAATGTTACGTGGACTTTGTAATTC ATGGAAAATGCCAGCATGACGTTCCCATTTCTATCGAAAAMTTATTTGAT CTAATCAATGAGATAGAAAAAAGAAGAATCAAATTACGAAATGCACTTGG TATTCCTAAAAATTTTTGAAAGNCCTTCTAATACATCAGAAAAGATATAA TTCTTCCATGATGTACCTCATTTGATAAAACTTATAAGAAACCATCTACT AGATAAAGGGTACCTTCTACCTGATGGATCCACGATAAAGAAAGAAGATT TTCTTCAATTGATAGGTAGAGATTGCCAGGAATTAAAAATAGCTCATAAG ATTAAATATCTCCACTTGGATTGTCACGTAGTCAAAGACAGCGTGTTTGT TTGGCAACACAACTGTTAAGCCATACAACAACCTCAGCATTCATGTATTT ATTCGCAGAAAAAAAGTCGCAATCTCAGTTTGTTAAAATTATAGACTCAT GGTTCGATGTCTTTAATAGTCGAAAGCCTTTTGATACTGAGAAAAACTAT TATGGATTTGAAATCCACTTCGATGAGCAAAAGGAGGTACTTTAAAAGAT GAAAGAAATGATCAAGAATTTAAGATAGATTGGGAAACGACGGATGCTAA TGCCCTTCCAGCAAAGGATTTCAATTTTCTATTTCATCTTTAAATAACAT GTTTCAAGATTTGAAAGACAAATTAAACATGAAATATGTCCAAACATATA GATTAAACCAGGACTGCTTAGAAAACCTCTCCTCACGTTTAAGGGACCTT GGAGTTACTAACGACCACCCGACCAGTTTGGACTGTATCAATAGACTAAG ATTAGTTATTCTTGTTCAGGCCAACAAAATCAATTTGTAATATTCAGCAG TTGAAATGGAAACTAATGAGTGAAAAAAATTCCTTAGTTTTCCCGTGAAT GATCTGAAGCCTTAGACAAACGATTCAAGGATTGATTAGGAGGAACATGT GGATGCTTCTTTATTAGCAAATGAATTAGCTTTGCAACCAGATTTTTGAA TATGAAGCGTCAACATTTCCTTCTTTTCTGCCATAGACTCCATAATTCAA GGTCTCGGGTACATTGCCGGATATTTGGCCCAGAAATTTAAGTTTAAATA TCCTGAATTGGATGCAAGACATCGGAGTACCGAAGTAAAGATTCCGATTA TACTCAATGGATATCAACCTAGTCAAGAGGAGGCCAAACTAAGCCCACAG AGTCCTTTTTAAAACAAATAGGAAAGTTTGAGACGATCTTTGAGKCCTCT CATTGTTTGGAAATATCAGGCCAGCCTCAAGTTATTCAATCCTTGATATC TGTACTGCAAACGTGCCCTCCCCACTTTCCTTTTAAGGTCATAAAAAAGT ATGCTCGATTAAGGACATTCATAAGAATTAAGGAGTTGAATGTACAAATT AATGTTTAAAAAAATTGCAAGAAAATTTGTCGTCACATTAGTTGTTACAT AATTTATAGTTTTTCGAAAATGTTTATTTATTTATTAAACCTTATGAAAA AGTTTCTTTAGTTACTGTATAAAATTTATTTTATAAAAATAGGACATTAA CTATTATTATAATTTGAATGTTATTAGTTAAGTTTTAATAACATTCAAAT TATTTTATAAAGACATTGAGCAACAATAAGGGTATTGAAATAAAATTTAA TAATCTAAACACACGTAATGAAGAAAGTTTGGTGAAAAAAAAAATTATTT TACGCCTTTTTCTCAATGGGCAATCACAATTTCACATTACAATCACGTCA TAAGTCGTACCTGGCGGCGAACTCCCCTGACACACCTGGACAGTTCTGAA AAACTTGCCTTCTATTCTATATACCTTGGACTAACTAAATGTTTCCAAAA AAATGGTAATGTTATACCACGATAAATAACTTAACATCTTAATTTATTTC TACCTATTTTCAGACAAAATTATGAACCCAAGAAATGTTCAAGATTGTGT AGTAAGCATTTTACGAAACAAAATTACAAACTTGAGAGTGTCGCTTCCAA TCCAAATAGAAAAATAAGATCCCCACTTACTTGGCGTTTTCTCAAAGCTG GTTCAATTCCTTCTATTTTCTCAATAATAATTGGGTATAATTTTTATATA TATTTTATAATATATGCATATTTCTATTTTTTGTTTTTCAGATTTGAAAG TGATTTAAGACGTCAAATACTGACAAAATATACTTACTTCTTGAAATCGC TATCTGATCTTTAGAAAAAGATTGATTTCGCTTCCTTGCCGTCAGAAATT CATTTTATAAAAGGAAAAGATAATTTGCTATTTTGTTCTATTGCCGGTGA AGTTCCTCAAATTCAATATTATCTTAAAATTATCATCATGATGGAATACG TATCAGTCAAAATAATTTTAAGCACATGTGTTCAACAAATCAAATTCAAA CGGTTTGCCAAATTGGAAACTTGCAGGCTTATGCTACATCCCTGACATCT CAGGGCATTGTGAAATCTAGAATTGAACTTTACATTTCAACTTTAAGGAG CGTTGACAGTGATGAATAGGAACATCAGAGAAAAGTTATTTTTATTTCGG AACAGCTTGAACTATTCTCAAACCCCAAAAATGGAAGACGATACTGTATG GAACTATTAGCGATGTGTATGTTATGGGAAAATTGCAGGCCTTCCCTTTA CAAAAAAAAATGTATCTGAAGATCGTTTCTGTCTCCCTAGTATTTCGCAT CTTCGAAGATTGTTTGGAGAAGTGATCGATATTGGGATACCATCATCTAC AATTTCGTATTTCAAAGCAAGGTTGAAATCTATTGCTCCAGAAGATATAA TTTTTAACGAAGTCTACTCCTCCCAAAGAATTGAATTTGTTGGACGAAAA TTTTATGGAGCAGAAGATCTGTGCTTAACGGTGATAAGTATAACATCCAA ATACAGTGATATTGTTGCGATGATTCCTGTTGTTACAATCAGCTCAAATA TCATTAAAAATTAGCCTATGCCTGCTATTAAAATGCTAACTGAACTTGGT TTTTATGTAGTAGCATTGATTTGTGATGGGCATTCATCAAATCAAAGTTT TACAGTCACCCATTGAAAATCCGTACGCACTACGAAGTCGAATTTTCTAG TTTTTTGATAAACTTTTACAGCAACTTTTTAAACAGGAAAACGTTTGTAT TACCAACATTCATTCTAAAAGACTATCAGCACGAAGAATTTATTACAGCC AGCGTTGATCATATTTTTCGACTGCATAAATAGGAACTTGGCTGCCCATA AAGTTTGTACACCAACTTAAAAAAACAAGTTCTGGCTCCTAAATCAATTG AAAAAGTAAAAGTGAACTTAGCTGATCTTTTTTTAGTTTGTCAACAATCT CTGGACTAAACCAATATGAAGAAGATTACCCAGAATGGAATTGTACTAAG ATATTTTTAGAAATTATCAACAAATTTTGGAGCGTAATATCAAGTTAAAA ATCCAAAATCTGGAATTATGGAAAGAAGAGAGGAAAGAAAACCTATTTTA ATCAATCAAAGACATAATTTAGAGTTTTTAAAAGACTTTTAAGCTGGTTA TTATCGTGGCTCSCTTCACCAATATGTCAAAATAAGGGTTTAACTTAAAG AGACCTTTGTTATTACCATTCAAAGAATAACTGTCCTCATTGAAATTTGC GAATATCTTCTGGGCGTGAAAATTCTATCGTACATTTATCTTTGGAATAT AACCTCGGATACAATTGAATGTCATTTGTGTAATATATGAAACTATCTGG TGCAGATTACTTTTTGAGCTGCCGTCAATTTCTGTAAACGGGGGGGGGGG GGAATAAGGTTAAATACGTTAGTAAAGTCATGCAAGATGGACGTTTCCAA TGCTTTCGTAATTTTTAATAAAGAAGAAGAATGTTTCGAAGATGAAATTG ATAATATTAAATCTCAGCTCGATTTGTTTCGTTTTTCAACCTCAAATTTC TTATTAGATCAGTGTCAGGCTAATTTATTATATTTTGTTTCTGGTTATAT AGCCTCATCAATTATAAAAGTACTTAAAATAAACATCTGTGAGTGTACCA ACTTTTTAATCTCGGAAAAACCAGTATCTTTTTATGTTGATTTTTCTGGA GAAGATATAGATTTTATAAAAAAAAATTCAAAAAATTGTTGATAGAGGAG GTCTTAAACAAACATTGGATTTGTTATAGTTGTTAACTTTACATGCCAAT CAGTTATATAAATTAATATATTCTTCGGACGTTGGCTGTGAAATATTGTT AAATTTTCGAATCAAAGACGATGTTTTTCTAAATTTTTTATTAATTTGCG
back to top
Add to Basket