EMLSAG00000000238, EMLSAG00000000238-683004 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000238
Unique NameEMLSAG00000000238-683004
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000238 vs. C. finmarchicus
Match: gi|592957186|gb|GAXK01001370.1| (TSA: Calanus finmarchicus comp4583248_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 1.106e-1
Identity = 16/33 (48.48%), Postives = 21/33 (63.64%), Query Frame = 0 
Query:    6 AFVIFNKEEECFEDEIDNIKSQLDLFRFSTSNF 38
            +  I NK  E FE EID+IK QLD+ + S +N 
Sbjct:  106 SHSIQNKSNEVFEKEIDDIKKQLDILKESETNL 204
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BLAST of EMLSAG00000000238 vs. C. finmarchicus
Match: gi|592936422|gb|GAXK01022131.1| (TSA: Calanus finmarchicus comp2510193_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 5.756e+0
Identity = 15/56 (26.79%), Postives = 27/56 (48.21%), Query Frame = 0 
Query:   18 EDEIDNIKSQLDLFRFSTSNFLLD-----QCQANLLYFVSGYIASSIIKVLKINIC 68
            ++ I NI  + D+++    N   D        AN  Y +SG+ A  ++K+  + IC
Sbjct:  142 KEPIANITVEEDVYKIKLYNLQTDIEYKISVAANGNYMISGFSAPHLLKISSVPIC 309
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BLAST of EMLSAG00000000238 vs. L. salmonis peptides
Match: EMLSAP00000000238 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1032:181816:186915:1 gene:EMLSAG00000000238 transcript:EMLSAT00000000238 description:"maker-LSalAtl2s1032-augustus-gene-0.8")

HSP 1 Score: 198.749 bits (504), Expect = 8.447e-67
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 
Query:    1 MDVSNAFVIFNKEEECFEDEIDNIKSQLDLFRFSTSNFLLDQCQANLLYFVSGYIASSIIKVLKINICECTNFLISEKPVSFYVDFSGEDIDFIKKNSKNC 101
            MDVSNAFVIFNKEEECFEDEIDNIKSQLDLFRFSTSNFLLDQCQANLLYFVSGYIASSIIKVLKINICECTNFLISEKPVSFYVDFSGEDIDFIKKNSKNC
Sbjct:    1 MDVSNAFVIFNKEEECFEDEIDNIKSQLDLFRFSTSNFLLDQCQANLLYFVSGYIASSIIKVLKINICECTNFLISEKPVSFYVDFSGEDIDFIKKNSKNC 101
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BLAST of EMLSAG00000000238 vs. L. salmonis peptides
Match: EMLSAP00000008076 (pep:novel supercontig:LSalAtl2s:LSalAtl2s47:287231:290661:-1 gene:EMLSAG00000008076 transcript:EMLSAT00000008076 description:"augustus-LSalAtl2s47-processed-gene-3.11")

HSP 1 Score: 75.485 bits (184), Expect = 6.309e-17
Identity = 39/91 (42.86%), Postives = 65/91 (71.43%), Query Frame = 0 
Query:   12 KEE--ECFEDEIDNIKSQLDLFRFSTSNFLLDQCQANLLYFVSGYIASSIIKVLKINICECTNFLISEKPVSFYVDFSGEDIDFIKKNSKN 100
            KEE  + +E ++  IKS LD + F++SNF +++ Q NL++FVSGYIASSI+ + +I  C+C NFLIS++ ++  ++FS +D   + K+ +N
Sbjct:  727 KEENDDSYEKDMHEIKSILDFYSFASSNFSINELQVNLMFFVSGYIASSIVDIFQIKNCDCINFLISDELITKNIEFSDDDSHILLKSFQN 817
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000238 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000238 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592957186|gb|GAXK01001370.1|1.106e-148.48TSA: Calanus finmarchicus comp4583248_c0_seq1 tran... [more]
gi|592936422|gb|GAXK01022131.1|5.756e+026.79TSA: Calanus finmarchicus comp2510193_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000238 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000002388.447e-67100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1032:1818... [more]
EMLSAP000000080766.309e-1742.86pep:novel supercontig:LSalAtl2s:LSalAtl2s47:287231... [more]
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BLAST of EMLSAG00000000238 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000238 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000238 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000238 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1032supercontigLSalAtl2s1032:181816..186915 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1032-augustus-gene-0.8
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000238 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000238EMLSAT00000000238-696085Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1032:181816..186915+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000238-683004 ID=EMLSAG00000000238-683004|Name=EMLSAG00000000238|organism=Lepeophtheirus salmonis|type=gene|length=5100bp|location=Sequence derived from alignment at LSalAtl2s1032:181816..186915+ (Lepeophtheirus salmonis)
AAAACAATGAGTAGGGTTAACGGTGAATAGTCGATGCTGGGACTATAGAA
AGGTAGACTCATACTCATCAGTCATCGCTCCTTTTAATACTATACACTTG
GATGAACAGAAAGGGAGGGAAAACGTTGTTTGTTATTATTTATTTGTTAC
CACGTTCACAGTCCATTCCCACTTTATTTCAAAAATACCTAGTATTTTTT
GTGCTCCGGGCTGTAAGTCGGGTTATCCTGGCCAGCCAAAAGAAGACAAC
GTAGTTCTACATAAGCTGCCCCTAAAAGATGGTAATCTCCTACGTAAATG
GGTACGAGTAATACCGAGGTTCGTAACATCATTTTATATCCTCAAAGTAT
AACTTTTCTATGCATAAAGTATGAATATTCATGTATCGGGAAGCACAGAG
ATAGACTAACTCAAGGTATATAGAATAGAAGCTATGTTCTTCTGTAAAAA
TACATGATTTGTTATTGAAAAGCGTGGCTGACGAGTGCTTTGCCTGCATT
GTCAACTTTAAGAAAGTGGCTTTCAAAGTTTAAATGCCCCCTGGAGTTCA
AAAGTTCTTGATATTTTGCAGAAAAAAATGGATGGTAAATTGAACAGATT
ATTAAAATTAATAAACAAATAAATATGAAACGTATTTTTACAGAGTTTTC
CAAAACGAATGGTCAATTAATACATCTGGGAGTTTTAGCTTTCGATGAAA
TGGATATCAAACGAAGCATCGATTATTCACACTCTTTCGATCAAGTATTT
GACCCTAACAAGAAGGCTCAGGTGGGAATGTTACGTGGACTTTGTAATTC
ATGGAAAATGCCAGCATGACGTTCCCATTTCTATCGAAAAMTTATTTGAT
CTAATCAATGAGATAGAAAAAAGAAGAATCAAATTACGAAATGCACTTGG
TATTCCTAAAAATTTTTGAAAGNCCTTCTAATACATCAGAAAAGATATAA
TTCTTCCATGATGTACCTCATTTGATAAAACTTATAAGAAACCATCTACT
AGATAAAGGGTACCTTCTACCTGATGGATCCACGATAAAGAAAGAAGATT
TTCTTCAATTGATAGGTAGAGATTGCCAGGAATTAAAAATAGCTCATAAG
ATTAAATATCTCCACTTGGATTGTCACGTAGTCAAAGACAGCGTGTTTGT
TTGGCAACACAACTGTTAAGCCATACAACAACCTCAGCATTCATGTATTT
ATTCGCAGAAAAAAAGTCGCAATCTCAGTTTGTTAAAATTATAGACTCAT
GGTTCGATGTCTTTAATAGTCGAAAGCCTTTTGATACTGAGAAAAACTAT
TATGGATTTGAAATCCACTTCGATGAGCAAAAGGAGGTACTTTAAAAGAT
GAAAGAAATGATCAAGAATTTAAGATAGATTGGGAAACGACGGATGCTAA
TGCCCTTCCAGCAAAGGATTTCAATTTTCTATTTCATCTTTAAATAACAT
GTTTCAAGATTTGAAAGACAAATTAAACATGAAATATGTCCAAACATATA
GATTAAACCAGGACTGCTTAGAAAACCTCTCCTCACGTTTAAGGGACCTT
GGAGTTACTAACGACCACCCGACCAGTTTGGACTGTATCAATAGACTAAG
ATTAGTTATTCTTGTTCAGGCCAACAAAATCAATTTGTAATATTCAGCAG
TTGAAATGGAAACTAATGAGTGAAAAAAATTCCTTAGTTTTCCCGTGAAT
GATCTGAAGCCTTAGACAAACGATTCAAGGATTGATTAGGAGGAACATGT
GGATGCTTCTTTATTAGCAAATGAATTAGCTTTGCAACCAGATTTTTGAA
TATGAAGCGTCAACATTTCCTTCTTTTCTGCCATAGACTCCATAATTCAA
GGTCTCGGGTACATTGCCGGATATTTGGCCCAGAAATTTAAGTTTAAATA
TCCTGAATTGGATGCAAGACATCGGAGTACCGAAGTAAAGATTCCGATTA
TACTCAATGGATATCAACCTAGTCAAGAGGAGGCCAAACTAAGCCCACAG
AGTCCTTTTTAAAACAAATAGGAAAGTTTGAGACGATCTTTGAGKCCTCT
CATTGTTTGGAAATATCAGGCCAGCCTCAAGTTATTCAATCCTTGATATC
TGTACTGCAAACGTGCCCTCCCCACTTTCCTTTTAAGGTCATAAAAAAGT
ATGCTCGATTAAGGACATTCATAAGAATTAAGGAGTTGAATGTACAAATT
AATGTTTAAAAAAATTGCAAGAAAATTTGTCGTCACATTAGTTGTTACAT
AATTTATAGTTTTTCGAAAATGTTTATTTATTTATTAAACCTTATGAAAA
AGTTTCTTTAGTTACTGTATAAAATTTATTTTATAAAAATAGGACATTAA
CTATTATTATAATTTGAATGTTATTAGTTAAGTTTTAATAACATTCAAAT
TATTTTATAAAGACATTGAGCAACAATAAGGGTATTGAAATAAAATTTAA
TAATCTAAACACACGTAATGAAGAAAGTTTGGTGAAAAAAAAAATTATTT
TACGCCTTTTTCTCAATGGGCAATCACAATTTCACATTACAATCACGTCA
TAAGTCGTACCTGGCGGCGAACTCCCCTGACACACCTGGACAGTTCTGAA
AAACTTGCCTTCTATTCTATATACCTTGGACTAACTAAATGTTTCCAAAA
AAATGGTAATGTTATACCACGATAAATAACTTAACATCTTAATTTATTTC
TACCTATTTTCAGACAAAATTATGAACCCAAGAAATGTTCAAGATTGTGT
AGTAAGCATTTTACGAAACAAAATTACAAACTTGAGAGTGTCGCTTCCAA
TCCAAATAGAAAAATAAGATCCCCACTTACTTGGCGTTTTCTCAAAGCTG
GTTCAATTCCTTCTATTTTCTCAATAATAATTGGGTATAATTTTTATATA
TATTTTATAATATATGCATATTTCTATTTTTTGTTTTTCAGATTTGAAAG
TGATTTAAGACGTCAAATACTGACAAAATATACTTACTTCTTGAAATCGC
TATCTGATCTTTAGAAAAAGATTGATTTCGCTTCCTTGCCGTCAGAAATT
CATTTTATAAAAGGAAAAGATAATTTGCTATTTTGTTCTATTGCCGGTGA
AGTTCCTCAAATTCAATATTATCTTAAAATTATCATCATGATGGAATACG
TATCAGTCAAAATAATTTTAAGCACATGTGTTCAACAAATCAAATTCAAA
CGGTTTGCCAAATTGGAAACTTGCAGGCTTATGCTACATCCCTGACATCT
CAGGGCATTGTGAAATCTAGAATTGAACTTTACATTTCAACTTTAAGGAG
CGTTGACAGTGATGAATAGGAACATCAGAGAAAAGTTATTTTTATTTCGG
AACAGCTTGAACTATTCTCAAACCCCAAAAATGGAAGACGATACTGTATG
GAACTATTAGCGATGTGTATGTTATGGGAAAATTGCAGGCCTTCCCTTTA
CAAAAAAAAATGTATCTGAAGATCGTTTCTGTCTCCCTAGTATTTCGCAT
CTTCGAAGATTGTTTGGAGAAGTGATCGATATTGGGATACCATCATCTAC
AATTTCGTATTTCAAAGCAAGGTTGAAATCTATTGCTCCAGAAGATATAA
TTTTTAACGAAGTCTACTCCTCCCAAAGAATTGAATTTGTTGGACGAAAA
TTTTATGGAGCAGAAGATCTGTGCTTAACGGTGATAAGTATAACATCCAA
ATACAGTGATATTGTTGCGATGATTCCTGTTGTTACAATCAGCTCAAATA
TCATTAAAAATTAGCCTATGCCTGCTATTAAAATGCTAACTGAACTTGGT
TTTTATGTAGTAGCATTGATTTGTGATGGGCATTCATCAAATCAAAGTTT
TACAGTCACCCATTGAAAATCCGTACGCACTACGAAGTCGAATTTTCTAG
TTTTTTGATAAACTTTTACAGCAACTTTTTAAACAGGAAAACGTTTGTAT
TACCAACATTCATTCTAAAAGACTATCAGCACGAAGAATTTATTACAGCC
AGCGTTGATCATATTTTTCGACTGCATAAATAGGAACTTGGCTGCCCATA
AAGTTTGTACACCAACTTAAAAAAACAAGTTCTGGCTCCTAAATCAATTG
AAAAAGTAAAAGTGAACTTAGCTGATCTTTTTTTAGTTTGTCAACAATCT
CTGGACTAAACCAATATGAAGAAGATTACCCAGAATGGAATTGTACTAAG
ATATTTTTAGAAATTATCAACAAATTTTGGAGCGTAATATCAAGTTAAAA
ATCCAAAATCTGGAATTATGGAAAGAAGAGAGGAAAGAAAACCTATTTTA
ATCAATCAAAGACATAATTTAGAGTTTTTAAAAGACTTTTAAGCTGGTTA
TTATCGTGGCTCSCTTCACCAATATGTCAAAATAAGGGTTTAACTTAAAG
AGACCTTTGTTATTACCATTCAAAGAATAACTGTCCTCATTGAAATTTGC
GAATATCTTCTGGGCGTGAAAATTCTATCGTACATTTATCTTTGGAATAT
AACCTCGGATACAATTGAATGTCATTTGTGTAATATATGAAACTATCTGG
TGCAGATTACTTTTTGAGCTGCCGTCAATTTCTGTAAACGGGGGGGGGGG
GGAATAAGGTTAAATACGTTAGTAAAGTCATGCAAGATGGACGTTTCCAA
TGCTTTCGTAATTTTTAATAAAGAAGAAGAATGTTTCGAAGATGAAATTG
ATAATATTAAATCTCAGCTCGATTTGTTTCGTTTTTCAACCTCAAATTTC
TTATTAGATCAGTGTCAGGCTAATTTATTATATTTTGTTTCTGGTTATAT
AGCCTCATCAATTATAAAAGTACTTAAAATAAACATCTGTGAGTGTACCA
ACTTTTTAATCTCGGAAAAACCAGTATCTTTTTATGTTGATTTTTCTGGA
GAAGATATAGATTTTATAAAAAAAAATTCAAAAAATTGTTGATAGAGGAG
GTCTTAAACAAACATTGGATTTGTTATAGTTGTTAACTTTACATGCCAAT
CAGTTATATAAATTAATATATTCTTCGGACGTTGGCTGTGAAATATTGTT
AAATTTTCGAATCAAAGACGATGTTTTTCTAAATTTTTTATTAATTTGCG
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