EMLSAG00000000239, EMLSAG00000000239-683005 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000239
Unique NameEMLSAG00000000239-683005
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000239 vs. C. finmarchicus
Match: gi|592818974|gb|GAXK01135594.1| (TSA: Calanus finmarchicus comp153891_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 5.090e-1
Identity = 20/62 (32.26%), Postives = 27/62 (43.55%), Query Frame = 0 
Query:    7 QKAVIISFFSNLKDNISLVPVSSKEWLDLDDYVRSFSFVYYVTLELCEEKSVTSSKI--IPM 66
            Q  V+I FFS    +IS  P     WL LD Y      +       C  K V+S ++  +PM
Sbjct: 1133 QPPVMIEFFSTFNADISSCPTFCSPWLQLDTYT-----ILCGLSPTCPSKRVSSDQMESLPM 1303
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BLAST of EMLSAG00000000239 vs. C. finmarchicus
Match: gi|592790622|gb|GAXK01163946.1| (TSA: Calanus finmarchicus comp1043461_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 4.778e+0
Identity = 14/42 (33.33%), Postives = 25/42 (59.52%), Query Frame = 0 
Query:   27 VSSKEWLDLDDYVRSFSFVYYVTLELCEEKSVTSS--KIIPM 66
            +S   WL+ D + RS   VY++ L+   ++ +++S   IIPM
Sbjct:   62 LSFSSWLEGDTFTRS*KHVYFMYLKFLADRVISTSTRHIIPM 187
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BLAST of EMLSAG00000000239 vs. C. finmarchicus
Match: gi|592948504|gb|GAXK01010049.1| (TSA: Calanus finmarchicus comp318896_c3_seq9 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 8.842e+0
Identity = 11/33 (33.33%), Postives = 21/33 (63.64%), Query Frame = 0 
Query:   38 YVRSFSFVYYVTLELCEEKSVTSSKIIPMTKQM 70
            +V SF+F  +  + LC+E   T+S I+ + +Q+
Sbjct:  496 FVPSFTFSAFTVISLCDEIQPTTSNIVNLIQQI 594
[Close]
BLAST of EMLSAG00000000239 vs. C. finmarchicus
Match: gi|592948505|gb|GAXK01010048.1| (TSA: Calanus finmarchicus comp318896_c3_seq8 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 8.883e+0
Identity = 11/33 (33.33%), Postives = 21/33 (63.64%), Query Frame = 0 
Query:   38 YVRSFSFVYYVTLELCEEKSVTSSKIIPMTKQM 70
            +V SF+F  +  + LC+E   T+S I+ + +Q+
Sbjct:  521 FVPSFTFSAFTVISLCDEIQPTTSNIVNLIQQI 619
[Close]
BLAST of EMLSAG00000000239 vs. C. finmarchicus
Match: gi|592948495|gb|GAXK01010058.1| (TSA: Calanus finmarchicus comp318896_c4_seq9 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 8.932e+0
Identity = 11/33 (33.33%), Postives = 21/33 (63.64%), Query Frame = 0 
Query:   38 YVRSFSFVYYVTLELCEEKSVTSSKIIPMTKQM 70
            +V SF+F  +  + LC+E   T+S I+ + +Q+
Sbjct:  154 FVPSFTFSAFTVISLCDEIQPTTSNIVNLIQQI 252
[Close]
BLAST of EMLSAG00000000239 vs. C. finmarchicus
Match: gi|592948506|gb|GAXK01010047.1| (TSA: Calanus finmarchicus comp318896_c3_seq7 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 8.932e+0
Identity = 11/33 (33.33%), Postives = 21/33 (63.64%), Query Frame = 0 
Query:   38 YVRSFSFVYYVTLELCEEKSVTSSKIIPMTKQM 70
            +V SF+F  +  + LC+E   T+S I+ + +Q+
Sbjct:  537 FVPSFTFSAFTVISLCDEIQPTTSNIVNLIQQI 635
[Close]
BLAST of EMLSAG00000000239 vs. C. finmarchicus
Match: gi|592948496|gb|GAXK01010057.1| (TSA: Calanus finmarchicus comp318896_c4_seq8 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 8.942e+0
Identity = 11/33 (33.33%), Postives = 21/33 (63.64%), Query Frame = 0 
Query:   38 YVRSFSFVYYVTLELCEEKSVTSSKIIPMTKQM 70
            +V SF+F  +  + LC+E   T+S I+ + +Q+
Sbjct:  141 FVPSFTFSAFTVISLCDEIQPTTSNIVNLIQQI 239
[Close]
BLAST of EMLSAG00000000239 vs. L. salmonis peptides
Match: EMLSAP00000000239 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1032:177921:179596:1 gene:EMLSAG00000000239 transcript:EMLSAT00000000239 description:"snap-LSalAtl2s1032-processed-gene-0.54")

HSP 1 Score: 265.774 bits (678), Expect = 3.077e-92
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 
Query:    1 MERIYEQKAVIISFFSNLKDNISLVPVSSKEWLDLDDYVRSFSFVYYVTLELCEEKSVTSSKIIPMTKQMLKTYETRIQASYSDRRLANAENELNIFCIENPLDKSTDPLLWWHMNKMKYPLQSLLSESE 130
            MERIYEQKAVIISFFSNLKDNISLVPVSSKEWLDLDDYVRSFSFVYYVTLELCEEKSVTSSKIIPMTKQMLKTYETRIQASYSDRRLANAENELNIFCIENPLDKSTDPLLWWHMNKMKYPLQSLLSESE
Sbjct:    1 MERIYEQKAVIISFFSNLKDNISLVPVSSKEWLDLDDYVRSFSFVYYVTLELCEEKSVTSSKIIPMTKQMLKTYETRIQASYSDRRLANAENELNIFCIENPLDKSTDPLLWWHMNKMKYPLQSLLSESE 130
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000239 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000239 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 7
Match NameE-valueIdentityDescription
gi|592818974|gb|GAXK01135594.1|5.090e-132.26TSA: Calanus finmarchicus comp153891_c3_seq1 trans... [more]
gi|592790622|gb|GAXK01163946.1|4.778e+033.33TSA: Calanus finmarchicus comp1043461_c0_seq1 tran... [more]
gi|592948504|gb|GAXK01010049.1|8.842e+033.33TSA: Calanus finmarchicus comp318896_c3_seq9 trans... [more]
gi|592948505|gb|GAXK01010048.1|8.883e+033.33TSA: Calanus finmarchicus comp318896_c3_seq8 trans... [more]
gi|592948495|gb|GAXK01010058.1|8.932e+033.33TSA: Calanus finmarchicus comp318896_c4_seq9 trans... [more]
gi|592948506|gb|GAXK01010047.1|8.932e+033.33TSA: Calanus finmarchicus comp318896_c3_seq7 trans... [more]
gi|592948496|gb|GAXK01010057.1|8.942e+033.33TSA: Calanus finmarchicus comp318896_c4_seq8 trans... [more]
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BLAST of EMLSAG00000000239 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000002393.077e-92100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1032:1779... [more]
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BLAST of EMLSAG00000000239 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000239 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000239 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000239 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1032supercontigLSalAtl2s1032:177921..179596 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s1032-processed-gene-0.54
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000239 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000239EMLSAT00000000239-696086Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1032:177921..179596+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000239-683005 ID=EMLSAG00000000239-683005|Name=EMLSAG00000000239|organism=Lepeophtheirus salmonis|type=gene|length=1676bp|location=Sequence derived from alignment at LSalAtl2s1032:177921..179596+ (Lepeophtheirus salmonis)
ATGGAAAGAATTTATGAACAAAAAGCCGTTATCATTTCGTTCTTTAGTAA
TTTAAAAGACAATATAAGTTTAGTTCCTGTTTCTTCCAAAGAGTGGTTGG
ACTTAGATGACTACGTAAGATCCTTTTCATTTGTTTACTACGTGACTCTA
GAACTGTGCGAAGAAAAAAGTGTTACCTCATCTAAAATTATTCCAATGAC
AAAGCAAATGTTGAAGACATACGGTAATATCTTAGAAAACAATTCATTCT
CTGAGAATAGTATTGGATTGATTTTAACTAGAGCTCTAAAAAATGACCTA
CTTTTTTGCTTTAACAAAATTGAAAATGTTAGTGCATTATCCAAAACGTC
GATATTAGATCCAAGATTTAAAAAAAAAGCCTTTAGGGATGTAAATAAAG
CTGAAACGTCCGTATATCAGTTAAAACAGGAACTGATATCCCTGCAGCCA
ATTCCCTTAATGGAATTCGAATCAAATACACATTGAAGTGATTTATAACA
CCGAAAGTGTAAAAATTTTTGATAGCATTTGGAATAACTCCTTTGAAGAA
ACTCGCATTCAAGCGTCCTATTCGGATAGAAGGCTGGCAAATGCCGAAAA
TGAACTGAACATCTTTTGTATTGAAAACCCATTGGATAAGTCAACAGATC
CTCTTTTGTGGTGGCATATGAACAAAATGAAATATCCTTTACAGGTAAAA
TTGGCCTATAAATATTTTAGTGTGCAAAGTACAAGCGTGAGTTTCGAGAG
ATTATTCTCAACTGGGGGCCAGGTATTGAATGACAGAAGAAACAGACAAT
CGGAATTAAATACAGAAAAATTAATTATCCTGAATATCAATCTTCGTCGT
GATAATAAACTCCGTCAATATTACAATGAACATGAAATTGGTAATCTTAA
TTATMCTATAGAAGTWAACTTACGTCTCTTAGATGTATAGAAAAGATATG
ATGATATTTGTTTATAAAAATTCTAATTATATTTTWKTGTATCATACTAT
AATGATAAATAATTAATAAATATTTAAATTTTAAAACATCAGGTTTTTAT
AACTTTTCAAAAAAATATTCAAAGAATGTAGTTAATGTGTTATCGAAGGA
CGGATTTTTAATTAATACAGTATATAATACAGTTAATATAAGTATTTAAA
CCATTAACTATTGTGAATTTATTCAATTCCAGTCAATCTTTTTGAGAAGC
TAGAAATTGAAATGATAAAATATAAATTACCATAAAGGTGTCTCGCTTTT
ACATATGATTATCNTTTTTATGCTAAAAATGTCCTTTCTATTATTTTTTA
AAGAGGTATAAAAGTTATSAATGATATTTGTAAGTATGAATTAATTACCC
TGGGGAACATAAAATTTATACCAACGAATTGAATACAGAATTCCGAATTC
CAACATATCATGAGATGGATGATCAATTTATGAGTTTCGATTCCCTCTAT
CTTTCCTTTGTCCTAACTATTGGAGATCATTGAAGTCCACTTCTTCCGAT
CTTAATAAATTAAGAATGATCTTAAGCCTTAGCAATTGTCAAATTAAAAG
GACATCTAGATTTCAATTTTTATATATTTTAGTTGTATAGTTATAATTTC
ATATTGTAGACGTACCTAATTAACATATCTTTATTTTATATTTAACATCC
AGAGCCTTTTGTCTGAAAGTGAATGA
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